Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p09480 Brassica napus HOM05D003466 ORTHO05D004102 1.0e-15 85.5 41 100.0
BcaB08g36728 Brassica carinata HOM05D003466 ORTHO05D004102 7.7e-11 69.3 35 91.4
A10p21590 Brassica napus HOM05D003466 ORTHO05D004102 7.7e-11 69.3 35 91.4
BraA10t44221Z Brassica rapa HOM05D003466 ORTHO05D004102 7.7e-11 69.3 35 91.4
C09p59160 Brassica napus HOM05D003466 ORTHO05D004102 2.9e-10 67.4 35 88.6
BolC9t58759H Brassica oleracea HOM05D003466 ORTHO05D004102 2.9e-10 67.4 35 88.6
BcaB01g05163 Brassica carinata HOM05D003466 ORTHO05D004102 5.0e-10 66.6 33 90.9
A03p08540 Brassica napus HOM05D003466 ORTHO05D004102 5.0e-10 66.6 33 90.9
C03p09970 Brassica napus HOM05D003466 ORTHO05D004102 5.0e-10 66.6 33 90.9
BolC3t13485H Brassica oleracea HOM05D003466 ORTHO05D004102 5.0e-10 66.6 33 90.9
BraA03t10180Z Brassica rapa HOM05D003466 ORTHO05D004102 5.0e-10 66.6 33 90.9
Thhalv10013587m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 1.9e-09 64.7 35 85.7
Sp6g26370 Schrenkiella parvula HOM05D003466 ORTHO05D004102 1.9e-09 64.7 35 85.7
BcaB01g04922 Brassica carinata HOM05D003466 ORTHO05D004102 2.5e-09 64.3 33 87.9
Aa31LG11G11660 Aethionema arabicum HOM05D003466 ORTHO05D004102 7.2e-09 62.8 35 82.9
AL6G29010 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 7.2e-09 62.8 35 82.9
AT4G08580 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 7.2e-09 62.8 35 82.9
Carub.0006s1611 Capsella rubella HOM05D003466 ORTHO05D004102 7.2e-09 62.8 35 82.9
AT5G17900 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 2.1e-08 61.2 35 80.0
CARHR195220 Cardamine hirsuta HOM05D003466 ORTHO05D004102 2.7e-08 60.8 35 80.0
THA.LOC104802883 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 2.7e-08 60.8 35 77.1
THA.LOC104820792 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 4.7e-08 60.1 35 77.1
SalBow7G4471 Salvia bowleyana HOM05D003466 ORTHO05D004102 1.0e-07 58.9 33 78.8
MSTRG.150 Avicennia marina HOM05D003466 ORTHO05D004102 2.3e-07 57.8 32 78.1
MSTRG.8394 Avicennia marina HOM05D003466 ORTHO05D004102 2.3e-07 57.8 32 78.1
Migut.F01214 Erythranthe guttata HOM05D003466 ORTHO05D004102 2.3e-07 57.8 32 78.1
Sed0012489 Sechium edule HOM05D003466 ORTHO05D004102 2.3e-07 57.8 33 75.8
CANSAT80G2535 Cannabis sativa HOM05D003466 ORTHO05D004102 4.0e-07 57.0 33 75.8
Hma1.2p1_0106F.1_g051170 Hydrangea macrophylla HOM05D003466 ORTHO05D004102 4.0e-07 57.0 33 75.8
Eucgr.E01598 Eucalyptus grandis HOM05D003466 ORTHO05D004102 5.2e-07 56.6 33 72.7
Eucgr.L03273 Eucalyptus grandis HOM05D003466 ORTHO05D004102 5.2e-07 56.6 33 72.7
Dinv05554 Davidia involucrata HOM05D003466 ORTHO05D004102 6.7e-07 56.2 33 75.8
unitig_22.g5474 Utricularia gibba HOM05D003466 ORTHO05D004102 6.7e-07 56.2 32 78.1
unitig_8.g3898 Utricularia gibba HOM05D003466 ORTHO05D004102 6.7e-07 56.2 32 78.1
Cpa.g.sc2.346 Carica papaya HOM05D003466 ORTHO05D004102 8.8e-07 55.8 34 73.5
Oeu046439.1 Olea europaea HOM05D003466 ORTHO05D004102 8.8e-07 55.8 33 72.7
Prupe.4G226700 Prunus persica HOM05D003466 ORTHO05D004102 8.8e-07 55.8 33 72.7
SGA_v2.0_scaffold44G16596 Striga asiatica HOM05D003466 ORTHO05D004102 8.8e-07 55.8 33 69.7
Atru.chr7.542 Acer truncatum HOM05D003466 ORTHO05D004102 1.1e-06 55.5 32 75.0
CSS0012966 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 1.1e-06 55.5 33 72.7
CSS0029529 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 1.1e-06 55.5 33 72.7
CSS0032791 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 1.1e-06 55.5 33 72.7
CSS0047344 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 1.1e-06 55.5 33 72.7
CANSAT25G0815 Cannabis sativa HOM05D003466 ORTHO05D004102 1.1e-06 55.5 33 72.7
Ciclev10020229m.g Citrus clementina HOM05D003466 ORTHO05D004102 1.1e-06 55.5 33 72.7
MELO3C008863.2 Cucumis melo HOM05D003466 ORTHO05D004102 1.1e-06 55.5 33 72.7
CsaV3_4G031590 Cucumis sativus L. HOM05D003466 ORTHO05D004102 1.1e-06 55.5 33 72.7
Dinv25045 Davidia involucrata HOM05D003466 ORTHO05D004102 1.1e-06 55.5 33 72.7
QL04p079149 Quercus lobata HOM05D003466 ORTHO05D004102 1.1e-06 55.5 33 72.7
QL06p022006 Quercus lobata HOM05D003466 ORTHO05D004102 1.1e-06 55.5 33 72.7
Rhsim09G0189500 Rhododendron simsii HOM05D003466 ORTHO05D004102 1.1e-06 55.5 33 72.7
Sed0007742 Sechium edule HOM05D003466 ORTHO05D004102 1.1e-06 55.5 33 72.7
vmacro10385 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 1.1e-06 55.5 33 72.7
Lj1A1073T40 Lonicera japonica HOM05D003466 ORTHO05D004102 1.5e-06 55.1 33 72.7
MD15G1341800 Malus domestica HOM05D003466 ORTHO05D004102 1.5e-06 55.1 32 75.0
TAR623G0841 Trochodendron aralioides HOM05D003466 ORTHO05D004102 1.5e-06 55.1 33 69.7
ClCG04G004740 Citrullus lanatus HOM05D003466 ORTHO05D004102 2.0e-06 54.7 33 72.7
Lalb_Chr12g0205661 Lupinus albus HOM05D003466 ORTHO05D004102 2.0e-06 54.7 33 72.7
Nn1g00582 Nelumbo nucifera HOM05D003466 ORTHO05D004102 2.0e-06 54.7 32 75.0
Nn1g06321 Nelumbo nucifera HOM05D003466 ORTHO05D004102 2.0e-06 54.7 32 75.0
Os02g0280100 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 2.0e-06 54.7 34 70.6
MD01G1001200 Malus domestica HOM05D003466 ORTHO05D004102 2.6e-06 54.3 33 72.7
SEGI_04842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 2.6e-06 54.3 33 69.7
SEGI_19842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 2.6e-06 54.3 33 69.7
SEGI_30994 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 2.6e-06 54.3 33 69.7
Ah.12g064750 Amaranthus hybridus HOM05D003466 ORTHO05D004102 3.3e-06 53.9 32 71.9
Eucgr.J03113 Eucalyptus grandis HOM05D003466 ORTHO05D004102 3.3e-06 53.9 33 69.7
Prupe.6G162200 Prunus persica HOM05D003466 ORTHO05D004102 3.3e-06 53.9 33 72.7
COL.COLO4_28634 Corchorus olitorius HOM05D003466 ORTHO05D004102 4.4e-06 53.5 33 69.7
arahy.Tifrunner.gnm1.ann1.GMJ520 Arachis hypogaea HOM05D003466 ORTHO05D004102 5.7e-06 53.1 33 69.7
arahy.Tifrunner.gnm1.ann1.WPUK1Z Arachis hypogaea HOM05D003466 ORTHO05D004102 5.7e-06 53.1 33 69.7
DCAR_004345 Daucus carota HOM05D003466 ORTHO05D004102 5.7e-06 53.1 33 69.7
Lj4g0028177 Lotus japonicus HOM05D003466 ORTHO05D004102 5.7e-06 53.1 33 69.7
LjContig00357g0023779 Lotus japonicus HOM05D003466 ORTHO05D004102 5.7e-06 53.1 33 69.7
Lalb_Chr07g0186841 Lupinus albus HOM05D003466 ORTHO05D004102 5.7e-06 53.1 33 69.7
PSO063G0954 Papaver somniferum HOM05D003466 ORTHO05D004102 5.7e-06 53.1 33 66.7
PSO339G1378 Papaver somniferum HOM05D003466 ORTHO05D004102 5.7e-06 53.1 33 66.7
GSVIVG01029154001 Vitis vinifera HOM05D003466 ORTHO05D004102 5.7e-06 53.1 33 69.7
EL10Ac2g02698 Beta vulgaris HOM05D003466 ORTHO05D004102 7.5e-06 52.8 32 71.9
Cfa017016 Carpinus fangiana HOM05D003466 ORTHO05D004102 7.5e-06 52.8 33 69.7
CDE06G0321 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 7.5e-06 52.8 33 69.7
Cc00_g13080 Coffea canephora HOM05D003466 ORTHO05D004102 7.5e-06 52.8 33 66.7
Haze_21188 Corylus avellana HOM05D003466 ORTHO05D004102 7.5e-06 52.8 33 69.7
Glyma.08G108300 Glycine max HOM05D003466 ORTHO05D004102 7.5e-06 52.8 33 69.7
Mapoly0065s0046 Marchantia polymorpha HOM05D003466 ORTHO05D004102 7.5e-06 52.8 32 71.9
Psat7g075240 Pisum sativum HOM05D003466 ORTHO05D004102 7.5e-06 52.8 33 66.7
CiPaw.15G127600 Carya illinoinensis HOM05D003466 ORTHO05D004102 9.7e-06 52.4 33 69.7
DCAR_012262 Daucus carota HOM05D003466 ORTHO05D004102 9.7e-06 52.4 32 71.9
MBI14_g30653_MAGBIO Magnolia biondii HOM05D003466 ORTHO05D004102 9.7e-06 52.4 33 69.7
Potri.019G039900 Populus trichocarpa HOM05D003466 ORTHO05D004102 9.7e-06 52.4 33 69.7


User provided reference genes

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