Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 4.4e-181 637.9 330 100.0
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 4.4e-181 637.9 330 100.0
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 4.4e-181 637.9 330 100.0
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 4.4e-181 637.9 330 100.0
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 1.1e-179 633.3 330 99.1
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 3.1e-179 631.7 330 98.8
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 1.0e-177 626.7 330 97.9
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 1.7e-177 625.9 330 97.9
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 2.2e-177 625.5 330 97.9
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 1.5e-176 622.9 330 97.3
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 3.2e-176 621.7 329 97.0
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 1.3e-172 609.8 330 95.5
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 1.1e-171 606.7 331 97.0
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.2e-162 576.6 325 91.1
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 2.3e-161 572.4 329 88.1
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 2.3e-161 572.4 314 93.3
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.9e-160 569.3 329 87.5
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 4.2e-160 568.2 329 87.2
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 7.2e-160 567.4 329 86.9
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 2.1e-159 565.8 328 86.9
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 3.6e-159 565.1 325 87.4
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 2.3e-158 562.4 328 85.4
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 5.2e-158 561.2 327 87.2
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 6.8e-158 560.8 329 85.4
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 1.5e-157 559.7 328 85.1
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 7.5e-157 557.4 328 84.8
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 9.8e-157 557.0 329 84.8
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.3e-156 556.6 325 86.8
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.3e-156 556.6 325 86.8
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 2.2e-156 555.8 327 85.9
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.2e-156 555.8 329 86.3
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 2.8e-156 555.4 329 85.1
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 4.9e-156 554.7 329 86.0
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 4.9e-156 554.7 326 86.5
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.1e-155 553.5 326 85.3
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 1.4e-155 553.1 328 84.8
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.4e-155 552.4 329 85.7
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 3.1e-155 552.0 326 85.0
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 5.4e-155 551.2 329 84.8
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 7.0e-155 550.8 329 85.7
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 9.2e-155 550.4 329 84.2
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 1.6e-154 549.7 328 83.8
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 2.7e-154 548.9 325 85.2
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 2.7e-154 548.9 328 85.4
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 4.5e-154 548.1 327 84.7
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 4.5e-154 548.1 329 85.1
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 5.9e-154 547.7 328 84.5
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 7.8e-154 547.4 327 84.4
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 1.3e-153 546.6 327 83.5
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 1.3e-153 546.6 329 84.8
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 1.3e-153 546.6 327 84.7
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 1.3e-153 546.6 327 83.8
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 2.3e-153 545.8 327 84.1
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 2.3e-153 545.8 329 83.9
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 5.0e-153 544.7 328 84.1
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 5.0e-153 544.7 327 83.5
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 6.6e-153 544.3 327 83.2
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 8.6e-153 543.9 335 83.3
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 2.5e-152 542.3 327 83.2
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 3.3e-152 542.0 325 84.3
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 3.3e-152 542.0 327 82.9
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 4.3e-152 541.6 329 83.9
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 4.3e-152 541.6 329 83.0
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 5.6e-152 541.2 329 84.2
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 5.6e-152 541.2 329 84.2
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 1.2e-151 540.0 329 82.4
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 2.8e-151 538.9 327 82.6
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 3.6e-151 538.5 328 83.5
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 4.7e-151 538.1 329 81.2
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.0e-150 537.0 327 82.3
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.0e-150 537.0 327 82.3
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.0e-150 537.0 329 81.2
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.4e-150 536.6 327 82.3
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 1.8e-150 536.2 328 82.9
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 2.3e-150 535.8 327 84.7
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 5.2e-150 534.6 328 80.8
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 6.8e-150 534.3 363 77.4
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.5e-149 533.1 381 74.0
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 5.8e-149 531.2 327 82.3
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 7.5e-149 530.8 327 80.4
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 1.3e-148 530.0 328 79.6
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.7e-148 529.6 329 80.2
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 2.2e-148 529.3 326 81.3
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 2.2e-148 529.3 356 76.4
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 2.9e-148 528.9 327 81.3
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.7e-148 528.5 329 80.5
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 6.4e-148 527.7 329 80.2
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 8.3e-148 527.3 327 82.6
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 1.9e-147 526.2 327 81.7
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 2.0e-146 522.7 329 81.5
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.1e-144 516.9 327 80.4
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.9e-144 516.2 327 80.4
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 2.3e-142 509.2 331 77.0
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 6.8e-142 507.7 331 76.7
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 8.9e-142 507.3 451 62.3
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 2.6e-141 505.8 328 77.7
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.7e-140 503.1 304 82.9
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 3.2e-139 498.8 329 77.8
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 3.5e-138 495.4 328 76.8
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 6.0e-138 494.6 330 78.2
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 6.6e-137 491.1 300 82.0
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 2.1e-135 486.1 329 78.1
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 4.4e-133 478.4 329 72.3
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 8.3e-132 474.2 330 72.4
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 4.1e-131 471.9 329 75.7
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.9e-129 465.3 368 67.9
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 1.1e-128 463.8 330 70.0
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.2e-125 453.8 299 76.9
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.7e-124 449.9 326 71.8
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 2.2e-124 449.5 275 86.9
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 2.1e-122 443.0 328 71.0
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 3.3e-120 435.6 279 77.4
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 2.1e-119 433.0 332 70.2
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 6.2e-119 431.4 316 76.3
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 8.4e-116 421.0 323 70.0
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 1.1e-110 404.1 318 63.5
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 4.0e-110 402.1 324 60.8
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 5.8e-109 398.3 330 62.1
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 2.4e-107 392.9 336 69.6
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 2.1e-106 389.8 234 83.8
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.4e-99 367.1 233 78.1
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 3.2e-91 339.3 329 60.2
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 1.1e-88 330.9 225 74.2
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 6.3e-87 325.1 235 67.2
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 4.1e-86 322.4 197 83.2
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 3.4e-85 319.3 330 61.5
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 1.9e-83 313.5 220 75.9
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 7.9e-82 308.1 220 74.5
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 1.3e-79 300.8 220 74.1
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 5.0e-76 288.9 339 45.1
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 4.2e-75 285.8 167 84.4
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 5.7e-72 275.4 162 85.8
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 7.2e-67 258.5 160 80.0
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.2e-61 241.1 268 54.5
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 6.5e-60 235.3 133 87.2
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 1.7e-55 220.7 130 85.4
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 1.2e-53 214.5 163 76.1
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.6e-42 176.4 98 86.7
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 1.8e-41 174.1 196 50.0
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 2.4e-38 163.7 203 49.8
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 1.1e-35 154.8 89 86.5
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 6.2e-34 149.1 103 71.8
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 1.8e-33 147.5 89 82.0
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 8.3e-31 138.7 88 81.8
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 9.2e-30 135.2 77 87.0
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 1.2e-29 134.8 69 91.3
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 1.0e-28 131.7 88 76.1
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 1.6e-26 124.4 74 83.8
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 4.0e-25 119.8 72 80.6
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 1.2e-24 118.2 82 69.5
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 6.4e-23 112.5 151 43.7
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.4e-22 110.5 65 80.0
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 4.6e-21 106.3 64 82.8
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 4.6e-21 106.3 69 78.3
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 1.8e-17 94.4 63 76.2
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 8.9e-09 65.5 34 88.2
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 3.4e-08 63.5 85 47.1
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 2.2e-07 60.8 33 84.8
A10p19460 Brassica napus HOM05D004483 ORTHO05D101033 3.8e-07 60.1 37 81.1


User provided reference genes

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