Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13523 Brassica carinata HOM05D003685 ORTHO05D003168 6.1e-28 127.1 80 100.0
A02p04230 Brassica napus HOM05D003685 ORTHO05D003168 6.1e-28 127.1 80 100.0
C02p09110 Brassica napus HOM05D003685 ORTHO05D003168 6.1e-28 127.1 80 100.0
BolC2t06822H Brassica oleracea HOM05D003685 ORTHO05D003168 6.1e-28 127.1 80 100.0
BraA02t05386Z Brassica rapa HOM05D003685 ORTHO05D003168 6.1e-28 127.1 80 100.0
AL6G28560 Arabidopsis lyrata HOM05D003685 ORTHO05D003168 2.5e-21 105.1 77 70.1
Carub.0006s1571 Capsella rubella HOM05D003685 ORTHO05D003168 7.2e-21 103.6 77 68.8
AT5G17480 Arabidopsis thaliana HOM05D003685 ORTHO05D003168 2.1e-20 102.1 77 68.8
Sp6g26740 Schrenkiella parvula HOM05D003685 ORTHO05D003168 2.1e-20 102.1 77 68.8
Thhalv10015161m.g Eutrema salsugineum HOM05D003685 ORTHO05D003168 4.7e-20 100.9 77 67.5
CARHR195720 Cardamine hirsuta HOM05D003685 ORTHO05D003168 7.9e-20 100.1 77 66.2
CARHR077450 Cardamine hirsuta HOM05D003685 ORTHO05D003168 1.8e-19 99.0 77 66.2
Aa31LG5G13930 Aethionema arabicum HOM05D003685 ORTHO05D003168 3.9e-19 97.8 84 66.7
BcaB04g19369 Brassica carinata HOM05D003685 ORTHO05D003168 3.9e-19 97.8 77 71.4
Sp3g02430 Schrenkiella parvula HOM05D003685 ORTHO05D003168 3.9e-19 97.8 77 68.8
BraA10t44250Z Brassica rapa HOM05D003685 ORTHO05D003168 5.1e-19 97.4 84 65.5
TWI53G1623 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 5.1e-19 97.4 79 63.3
Manes.17G064700 Manihot esculenta HOM05D003685 ORTHO05D003168 6.7e-19 97.1 77 63.6
BcaC01g04402 Brassica carinata HOM05D003685 ORTHO05D003168 8.8e-19 96.7 77 76.6
BcaC01g04406 Brassica carinata HOM05D003685 ORTHO05D003168 8.8e-19 96.7 77 76.6
A03p33270 Brassica napus HOM05D003685 ORTHO05D003168 8.8e-19 96.7 77 75.3
C03p40520 Brassica napus HOM05D003685 ORTHO05D003168 8.8e-19 96.7 77 76.6
BolC3t16317H Brassica oleracea HOM05D003685 ORTHO05D003168 8.8e-19 96.7 77 76.6
BraA03t12499Z Brassica rapa HOM05D003685 ORTHO05D003168 8.8e-19 96.7 77 76.6
THA.LOC104820836 Tarenaya hassleriana HOM05D003685 ORTHO05D003168 8.8e-19 96.7 77 64.9
AL3G13100 Arabidopsis lyrata HOM05D003685 ORTHO05D003168 1.1e-18 96.3 77 67.5
AT3G03430 Arabidopsis thaliana HOM05D003685 ORTHO05D003168 2.0e-18 95.5 77 63.6
Thecc.04G119100 Theobroma cacao HOM05D003685 ORTHO05D003168 2.0e-18 95.5 77 63.6
COL.COLO4_15735 Corchorus olitorius HOM05D003685 ORTHO05D003168 2.6e-18 95.1 77 63.6
Manes.01G116500 Manihot esculenta HOM05D003685 ORTHO05D003168 3.3e-18 94.7 77 61.0
BcaC05g30536 Brassica carinata HOM05D003685 ORTHO05D003168 4.4e-18 94.4 77 61.0
A05p43820 Brassica napus HOM05D003685 ORTHO05D003168 4.4e-18 94.4 77 61.0
C05p63400 Brassica napus HOM05D003685 ORTHO05D003168 4.4e-18 94.4 77 61.0
BolC5t35004H Brassica oleracea HOM05D003685 ORTHO05D003168 4.4e-18 94.4 77 61.0
BraA05t23119Z Brassica rapa HOM05D003685 ORTHO05D003168 4.4e-18 94.4 77 61.0
Cpa.g.sc116.33 Carica papaya HOM05D003685 ORTHO05D003168 5.7e-18 94.0 83 60.2
DCAR_025870 Daucus carota HOM05D003685 ORTHO05D003168 9.7e-18 93.2 83 72.3
Duzib211G0337 Durio zibethinus HOM05D003685 ORTHO05D003168 1.3e-17 92.8 77 61.0
QL11p003870 Quercus lobata HOM05D003685 ORTHO05D003168 1.3e-17 92.8 76 61.8
TPR.G3491 Trifolium pratense HOM05D003685 ORTHO05D003168 1.7e-17 92.4 77 74.0
ClCG03G008650 Citrullus lanatus HOM05D003685 ORTHO05D003168 2.8e-17 91.7 77 62.3
CsaV3_5G024070 Cucumis sativus L. HOM05D000964 ORTHO05D003168 2.8e-17 91.7 77 62.3
Sed0020121 Sechium edule HOM05D003685 ORTHO05D003168 2.8e-17 91.7 77 62.3
Actinidia22789 Actinidia chinensis HOM05D000008 ORTHO05D000005 3.7e-17 91.3 77 62.3
Oeu000910.1 Olea europaea HOM05D003685 ORTHO05D003168 3.7e-17 91.3 77 58.4
MELO3C022853.2 Cucumis melo HOM05D003685 ORTHO05D003168 6.3e-17 90.5 77 61.0
PGR042G0188 Punica granatum HOM05D003685 ORTHO05D003168 6.3e-17 90.5 77 76.6
Sed0024816 Sechium edule HOM05D003685 ORTHO05D003168 6.3e-17 90.5 77 61.0
TWI74G1588 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 6.3e-17 90.5 79 59.5
Medtr5g079470 Medicago truncatula HOM05D003685 ORTHO05D003168 8.2e-17 90.1 77 61.0
Ca_05785_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 1.4e-16 89.4 77 70.1
Ca_30988_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 1.4e-16 89.4 77 70.1
Gohir.A11G160900 Gossypium hirsutum HOM05D003685 ORTHO05D003168 1.4e-16 89.4 77 59.7
Gohir.D11G167200 Gossypium hirsutum HOM05D003685 ORTHO05D003168 1.4e-16 89.4 77 59.7
Gorai.007G178300 Gossypium raimondii HOM05D003685 ORTHO05D003168 1.4e-16 89.4 77 59.7
CSS0039227 Camellia sinensis var. sinensis HOM05D003685 ORTHO05D003168 2.4e-16 88.6 77 59.7
BolC1t05831H Brassica oleracea HOM05D003685 ORTHO05D003168 3.1e-16 88.2 77 71.4
Migut.L00461 Erythranthe guttata HOM05D003685 ORTHO05D003168 3.1e-16 88.2 76 69.7
Hma1.2p1_0832F.1_g225520 Hydrangea macrophylla HOM05D003685 ORTHO05D003168 3.1e-16 88.2 77 58.4
BcaC09g47746 Brassica carinata HOM05D003685 ORTHO05D003168 9.1e-16 86.7 77 72.7
CSS0016349 Camellia sinensis var. sinensis HOM05D003685 ORTHO05D003168 9.1e-16 86.7 77 75.3
Sc10g0000750 Simmondsia chinensis HOM05D003685 ORTHO05D003168 9.1e-16 86.7 77 57.1
TWI77G0488 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 9.1e-16 86.7 79 74.7
vmacro22373 Vaccinium macrocarpon HOM05D014992 ORTHO05D003168 9.1e-16 86.7 74 62.2
vmacro22897 Vaccinium macrocarpon HOM05D003685 ORTHO05D003168 9.1e-16 86.7 74 62.2
AUR62023227 Chenopodium quinoa HOM05D003685 ORTHO05D003168 1.2e-15 86.3 77 72.7
Nn3g18248 Nelumbo nucifera HOM05D003685 ORTHO05D003168 1.6e-15 85.9 83 54.2
Phvul.001G231100 Phaseolus vulgaris HOM05D003685 ORTHO05D003168 1.6e-15 85.9 77 74.0
Sc11g0008680 Simmondsia chinensis HOM05D003685 ORTHO05D003168 1.6e-15 85.9 77 57.1
unitig_37.g12380 Utricularia gibba HOM05D000408 ORTHO05D000655 1.6e-15 85.9 77 53.2
AUR62023181 Chenopodium quinoa HOM05D003685 ORTHO05D003168 2.0e-15 85.5 77 71.4
LjContig00141g0023457 Lotus japonicus HOM05D003685 ORTHO05D003168 2.0e-15 85.5 77 57.1
CAN.G1067.5 Capsicum annuum HOM05D003685 ORTHO05D003168 2.6e-15 85.1 77 55.8
Lj6g0007365 Lotus japonicus HOM05D003685 ORTHO05D003168 2.6e-15 85.1 77 70.1
Psat2g041920 Pisum sativum HOM05D003685 ORTHO05D003168 2.6e-15 85.1 77 74.0
arahy.Tifrunner.gnm1.ann1.20BG1F Arachis hypogaea HOM05D003685 ORTHO05D003168 4.5e-15 84.3 77 55.8
arahy.Tifrunner.gnm1.ann1.TR7VBX Arachis hypogaea HOM05D003685 ORTHO05D003168 4.5e-15 84.3 77 55.8
CiPaw.03G069700 Carya illinoinensis HOM05D003685 ORTHO05D003168 4.5e-15 84.3 77 57.1
Cc07_g08080 Coffea canephora HOM05D003685 ORTHO05D003168 4.5e-15 84.3 77 57.1
Solyc02g063340.1 Solanum lycopersicum HOM05D003685 ORTHO05D003168 4.5e-15 84.3 77 55.8
Sopen02g014410 Solanum pennellii HOM05D003685 ORTHO05D003168 4.5e-15 84.3 77 55.8
PGSC0003DMG400010392 Solanum tuberosum HOM05D003685 ORTHO05D003168 4.5e-15 84.3 77 55.8
BraA01t04580Z Brassica rapa HOM05D003685 ORTHO05D003168 5.9e-15 84.0 84 71.4
Manes.13G093900 Manihot esculenta HOM05D003685 ORTHO05D003168 5.9e-15 84.0 75 57.3
Actinidia36369 Actinidia chinensis HOM05D003685 ORTHO05D003168 7.7e-15 83.6 77 57.1
Duzib133G0562 Durio zibethinus HOM05D003685 ORTHO05D003168 7.7e-15 83.6 83 72.3
CAN.G1061.44 Capsicum annuum HOM05D003685 ORTHO05D003168 1.0e-14 83.2 77 57.1
Gohir.A07G077100 Gossypium hirsutum HOM05D003685 ORTHO05D003168 1.0e-14 83.2 77 55.8
Gorai.001G086900 Gossypium raimondii HOM05D003685 ORTHO05D003168 1.0e-14 83.2 77 55.8
MD09G1262700 Malus domestica HOM05D003685 ORTHO05D003168 1.0e-14 83.2 77 54.5
SalBow3G2120 Salvia bowleyana HOM05D003685 ORTHO05D003168 1.0e-14 83.2 77 55.8
Lalb_Chr15g0084851 Lupinus albus HOM05D003685 ORTHO05D003168 1.3e-14 82.8 77 57.1
Nitab4.5_0000036g0480 Nicotiana tabacum HOM05D003685 ORTHO05D003168 1.3e-14 82.8 77 54.5
SalBow7G2561 Salvia bowleyana HOM05D003685 ORTHO05D003168 1.3e-14 82.8 77 70.1
BcaC05g30270 Brassica carinata HOM05D003685 ORTHO05D003168 2.2e-14 82.0 77 57.1
Nitab4.5_0003855g0030 Nicotiana tabacum HOM05D003685 ORTHO05D003168 2.2e-14 82.0 77 54.5
PGR004G0993 Punica granatum HOM05D003685 ORTHO05D003168 2.2e-14 82.0 75 54.7
Lsat_1_v5_gn_3_81860 Lactuca sativa HOM05D003685 ORTHO05D003168 3.8e-14 81.3 83 55.4
Lalb_Chr10g0104461 Lupinus albus HOM05D003685 ORTHO05D003168 3.8e-14 81.3 77 54.5
Rhsim08G0086900 Rhododendron simsii HOM05D003685 ORTHO05D003168 3.8e-14 81.3 77 55.8
Zm00001eb175870 Zea mays HOM05D003685 ORTHO05D003168 3.8e-14 81.3 79 68.4
Gohir.D07G081800 Gossypium hirsutum HOM05D003685 ORTHO05D003168 5.0e-14 80.9 77 54.5
Solyc02g091480.1 Solanum lycopersicum HOM05D003685 ORTHO05D003168 6.5e-14 80.5 77 55.8
ECA238G1186 Erigeron canadensis HOM05D003685 ORTHO05D003168 8.5e-14 80.1 83 67.5
Lalb_Chr20g0117001 Lupinus albus HOM05D003685 ORTHO05D003168 8.5e-14 80.1 77 54.5
MD17G1257600 Malus domestica HOM05D003685 ORTHO05D003168 8.5e-14 80.1 77 54.5
Cfa002094 Carpinus fangiana HOM05D003685 ORTHO05D003168 1.1e-13 79.7 77 68.8
HanXRQChr12g0375651 Helianthus annuus HOM05D003685 ORTHO05D003168 1.1e-13 79.7 76 53.9
Glyma.14G216000 Glycine max HOM05D003685 ORTHO05D003168 1.5e-13 79.3 77 72.7
Lalb_Chr18g0053371 Lupinus albus HOM05D003685 ORTHO05D003168 1.5e-13 79.3 77 54.5
HanXRQChr14g0440341 Helianthus annuus HOM05D003685 ORTHO05D003168 1.9e-13 79.0 84 64.3
RcHm_v2.0_Chr3g0493401 Rosa chinensis HOM05D003685 ORTHO05D003168 1.9e-13 79.0 77 51.9
Sopen02g036100 Solanum pennellii HOM05D003685 ORTHO05D003168 1.9e-13 79.0 77 54.5
PGSC0003DMG400030652 Solanum tuberosum HOM05D003685 ORTHO05D003168 1.9e-13 79.0 77 54.5
HPP92_003364 Vanilla planifolia HOM05D003685 ORTHO05D003168 1.9e-13 79.0 76 53.9
Prupe.3G160400 Prunus persica HOM05D003685 ORTHO05D003168 2.5e-13 78.6 76 53.9
ECA246G1160 Erigeron canadensis HOM05D003685 ORTHO05D003168 3.2e-13 78.2 83 51.8
MBI04_g34112_MAGBIO Magnolia biondii HOM05D003685 ORTHO05D003168 3.2e-13 78.2 78 47.4
Zm00001eb039230 Zea mays HOM05D003685 ORTHO05D003168 3.2e-13 78.2 74 68.9
FvH4_1g28900 Fragaria vesca HOM05D003685 ORTHO05D003168 4.2e-13 77.8 77 54.5
FAN19G1718 Fragaria x ananassa HOM05D003685 ORTHO05D003168 4.2e-13 77.8 77 54.5
HanXRQChr15g0475431 Helianthus annuus HOM05D003685 ORTHO05D003168 7.2e-13 77.0 77 51.9
FAN23G1531 Fragaria x ananassa HOM05D003685 ORTHO05D003168 9.4e-13 76.6 77 54.5
Potri.017G126400 Populus trichocarpa HOM05D003685 ORTHO05D003168 9.4e-13 76.6 82 70.7
CiPaw.04G046300 Carya illinoinensis HOM05D003685 ORTHO05D003168 1.2e-12 76.3 76 52.6
Ciclev10013229m.g Citrus clementina HOM05D003685 ORTHO05D003168 1.2e-12 76.3 77 49.4
Lalb_Chr17g0346151 Lupinus albus HOM05D003685 ORTHO05D003168 1.2e-12 76.3 77 50.6
Os08g0560700 Oryza sativa ssp. japonica HOM05D003685 ORTHO05D003168 1.2e-12 76.3 79 65.8
Glyma.11G217300 Glycine max HOM05D003685 ORTHO05D003168 2.1e-12 75.5 86 58.1
Atru.chr1.1843 Acer truncatum HOM05D003685 ORTHO05D003168 2.7e-12 75.1 77 50.6
Phvul.008G234700 Phaseolus vulgaris HOM05D003685 ORTHO05D003168 3.6e-12 74.7 77 70.1
MBI12_g30397_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D003168 4.7e-12 74.3 74 51.4
Haze_16359 Corylus avellana HOM05D003685 ORTHO05D003168 6.1e-12 73.9 72 52.8
Glyma.02G245901 Glycine max HOM05D003685 ORTHO05D003168 6.1e-12 73.9 77 68.8
Lsat_1_v5_gn_2_79940 Lactuca sativa HOM05D003685 ORTHO05D003168 1.4e-11 72.8 74 50.0
Aqoxy3G00097 Aquilegia oxysepala HOM05D003685 ORTHO05D003168 1.8e-11 72.4 83 65.1
Potri.004G089200 Populus trichocarpa HOM05D003685 ORTHO05D003168 2.3e-11 72.0 82 65.9
Sabra17G0106100 Salix brachista HOM05D003685 ORTHO05D003168 2.3e-11 72.0 76 72.4
HanXRQChr07g0193541 Helianthus annuus HOM05D003685 ORTHO05D003168 4.0e-11 71.2 79 64.6
A10p21910 Brassica napus HOM05D003685 ORTHO05D003168 8.8e-11 70.1 49 77.6
Lsat_1_v5_gn_4_156660 Lactuca sativa HOM05D003685 ORTHO05D003168 1.1e-10 69.7 76 48.7
Peaxi162Scf02113g00006 Petunia axillaris HOM05D003685 ORTHO05D003168 1.5e-10 69.3 65 55.4
ClCG08G003720 Citrullus lanatus HOM05D003685 ORTHO05D003168 2.0e-10 68.9 82 46.3
Dinv14887 Davidia involucrata HOM05D000559 ORTHO05D000596 2.0e-10 68.9 65 53.8
Lj4g0014778 Lotus japonicus HOM05D003685 ORTHO05D003168 2.0e-10 68.9 74 48.6
Sed0006736 Sechium edule HOM05D003685 ORTHO05D003168 2.0e-10 68.9 74 55.4
MELO3C030156.2 Cucumis melo HOM05D003685 ORTHO05D003168 2.6e-10 68.6 81 48.1
PSO017G5026 Papaver somniferum HOM05D003685 ORTHO05D003168 2.6e-10 68.6 77 66.2
PSO478G3570 Papaver somniferum HOM05D003685 ORTHO05D003168 2.6e-10 68.6 77 66.2
Nitab4.5_0009638g0020 Nicotiana tabacum HOM05D003685 ORTHO05D003168 3.3e-10 68.2 67 53.7
Peaxi162Scf00911g00004 Petunia axillaris HOM05D003685 ORTHO05D003168 3.3e-10 68.2 65 53.8
Lalb_Chr12g0209331 Lupinus albus HOM05D003685 ORTHO05D003168 4.4e-10 67.8 78 47.4
QL03p039371 Quercus lobata HOM05D003685 ORTHO05D003168 4.4e-10 67.8 74 62.2
HPP92_005033 Vanilla planifolia HOM05D003685 ORTHO05D003168 5.7e-10 67.4 76 63.2
MD05G1258400 Malus domestica HOM05D003685 ORTHO05D003168 9.7e-10 66.6 76 46.1
Lj4g0022454 Lotus japonicus HOM05D003685 ORTHO05D003168 1.3e-09 66.2 74 47.3
Nitab4.5_0002664g0060 Nicotiana tabacum HOM05D003685 ORTHO05D003168 1.3e-09 66.2 65 53.8
CsaV3_6G003680 Cucumis sativus L. HOM05D003685 ORTHO05D003168 3.7e-09 64.7 70 48.6
TAR629G2979 Trochodendron aralioides HOM05D003685 ORTHO05D003168 3.7e-09 64.7 77 63.6
arahy.Tifrunner.gnm1.ann1.3WH4I0 Arachis hypogaea HOM05D000001 ORTHO05D009971 8.2e-09 63.5 72 45.8
arahy.Tifrunner.gnm1.ann1.YU644E Arachis hypogaea HOM05D000001 ORTHO05D009971 8.2e-09 63.5 72 45.8
Lalb_Chr07g0187881 Lupinus albus HOM05D003685 ORTHO05D003168 8.2e-09 63.5 72 44.4
Ah.16g101220 Amaranthus hybridus HOM05D000135 ORTHO05D000203 3.1e-08 61.6 83 43.4
HanXRQChr16g0530831 Helianthus annuus HOM05D003685 ORTHO05D003168 3.1e-08 61.6 70 62.9
FvH4_3g11850 Fragaria vesca HOM05D003685 ORTHO05D003168 4.1e-08 61.2 76 46.1
EL10Ac2g04468 Beta vulgaris HOM05D000135 ORTHO05D000203 2.0e-07 58.9 81 42.0
RcHm_v2.0_Chr5g0019281 Rosa chinensis HOM05D003685 ORTHO05D003168 2.0e-07 58.9 76 40.8
BcaC04g18788 Brassica carinata HOM05D003685 ORTHO05D003168 3.5e-07 58.2 52 59.6
C09p59660 Brassica napus HOM05D003685 ORTHO05D003168 3.5e-07 58.2 52 59.6
PGR083G1003 Punica granatum HOM05D000135 ORTHO05D000203 3.5e-07 58.2 80 38.8
Psat7g084080 Pisum sativum HOM05D003685 ORTHO05D003168 5.9e-07 57.4 78 57.7
Ca_11575_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 1.3e-06 56.2 73 54.8
TPR.G14 Trifolium pratense HOM05D003685 ORTHO05D003168 1.3e-06 56.2 78 57.7
AUR62023178 Chenopodium quinoa HOM05D000135 ORTHO05D000203 1.7e-06 55.8 82 40.2
PGSC0003DMG400010410 Solanum tuberosum HOM05D000135 ORTHO05D000203 2.9e-06 55.1 61 47.5
EL10Ac1g00489 Beta vulgaris HOM05D000135 ORTHO05D000203 3.8e-06 54.7 64 45.3
BolC9t58805H Brassica oleracea HOM05D003685 ORTHO05D003168 3.8e-06 54.7 33 81.8
Glyma.08G093000 Glycine max HOM05D003685 ORTHO05D003168 3.8e-06 54.7 73 58.9
ClCG05G011030 Citrullus lanatus HOM05D003685 ORTHO05D003168 8.5e-06 53.5 80 58.8
Glyma.05G138000 Glycine max HOM05D003685 ORTHO05D003168 8.5e-06 53.5 73 58.9


User provided reference genes

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