Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 2.1e-119 432.6 251 100.0
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 2.1e-119 432.6 251 100.0
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 2.1e-119 432.6 251 100.0
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 2.0e-109 399.4 251 90.8
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 8.6e-105 384.0 251 87.6
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 1.6e-95 353.2 252 81.7
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 1.8e-81 306.6 255 69.8
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.9e-80 303.1 255 70.6
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 5.3e-78 295.0 256 76.6
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 1.0e-76 290.8 252 67.9
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 1.3e-76 290.4 245 71.0
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 4.2e-75 285.4 235 72.3
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 4.2e-75 285.4 235 72.3
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 9.6e-72 274.2 251 68.9
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 1.3e-71 273.9 237 71.7
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 1.8e-70 270.0 237 71.3
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 6.9e-70 268.1 256 71.5
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 1.6e-66 256.9 254 63.8
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 1.6e-66 256.9 251 64.1
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 5.1e-65 251.9 252 66.7
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 5.1e-65 251.9 251 62.9
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 5.1e-57 225.3 252 62.7
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 2.2e-52 209.9 230 57.4
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 6.1e-50 201.8 225 59.1
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 1.1e-40 171.0 195 53.3
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 1.5e-40 170.6 190 53.7
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 2.0e-40 170.2 201 50.2
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 3.3e-40 169.5 199 51.3
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 7.5e-40 168.3 190 51.6
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 1.7e-39 167.2 193 52.3
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 2.2e-39 166.8 198 52.5
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 3.7e-39 166.0 213 49.8
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 6.3e-39 165.2 231 44.6
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 1.1e-38 164.5 200 50.5
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 1.1e-38 164.5 224 46.9
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 1.1e-38 164.5 195 48.2
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 1.8e-38 163.7 187 58.3
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.8e-38 163.7 193 51.3
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 3.1e-38 162.9 201 50.2
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 7.0e-38 161.8 217 49.8
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 9.1e-38 161.4 211 48.8
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.6e-37 160.6 227 47.6
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 2.0e-37 160.2 201 51.2
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 2.0e-37 160.2 224 46.0
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.7e-37 159.8 210 48.1
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 1.0e-36 157.9 202 47.5
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 1.0e-36 157.9 207 48.8
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 2.9e-36 156.4 220 46.8
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 3.8e-36 156.0 214 48.1
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 6.5e-36 155.2 216 45.8
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 1.1e-35 154.5 180 51.7
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 1.9e-35 153.7 200 48.0
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.5e-35 153.3 216 43.1
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 3.2e-35 152.9 230 44.8
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 5.5e-35 152.1 241 40.2
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 5.5e-35 152.1 209 45.9
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 5.5e-35 152.1 226 42.9
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 9.4e-35 151.4 167 53.3
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 1.2e-34 151.0 216 42.6
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.6e-34 150.6 161 62.7
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 2.1e-34 150.2 124 69.4
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 2.1e-34 150.2 186 50.0
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 2.7e-34 149.8 167 53.3
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 2.7e-34 149.8 218 45.4
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 3.6e-34 149.4 176 50.6
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 4.7e-34 149.1 222 45.5
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 6.1e-34 148.7 225 44.4
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 6.1e-34 148.7 194 44.3
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 6.1e-34 148.7 191 48.2
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 6.1e-34 148.7 171 49.7
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 8.0e-34 148.3 241 40.2
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.8e-33 147.1 114 77.2
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 4.0e-33 146.0 200 46.5
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 5.2e-33 145.6 207 44.0
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.2e-32 144.4 206 42.2
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 1.2e-32 144.4 214 44.9
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 1.2e-32 144.4 190 56.8
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.0e-32 143.7 207 42.5
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 2.6e-32 143.3 207 42.5
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 2.6e-32 143.3 226 42.0
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 4.4e-32 142.5 230 44.3
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 5.7e-32 142.1 208 43.3
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 7.5e-32 141.7 205 49.8
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 9.8e-32 141.4 164 51.2
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 9.8e-32 141.4 182 47.3
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 1.7e-31 140.6 190 45.8
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 2.2e-31 140.2 174 50.0
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 3.7e-31 139.4 222 43.2
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 4.8e-31 139.0 215 44.7
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 4.8e-31 139.0 241 39.8
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 6.3e-31 138.7 151 53.6
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 6.3e-31 138.7 217 41.9
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 8.3e-31 138.3 217 41.9
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 8.3e-31 138.3 177 49.7
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 8.3e-31 138.3 174 51.7
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 8.3e-31 138.3 195 45.6
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 1.4e-30 137.5 218 42.2
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 3.1e-30 136.3 205 44.9
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 5.4e-30 135.6 203 42.9
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 7.0e-30 135.2 199 43.7
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 7.0e-30 135.2 236 38.6
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 1.2e-29 134.4 278 39.2
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 2.7e-29 133.3 200 41.5
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 3.5e-29 132.9 196 40.3
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 7.7e-29 131.7 178 47.2
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.2e-28 130.2 211 40.3
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 2.9e-28 129.8 161 47.8
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 3.8e-28 129.4 114 71.9
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 3.8e-28 129.4 203 46.3
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 6.5e-28 128.6 191 41.9
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 8.5e-28 128.3 193 41.5
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 8.5e-28 128.3 179 44.7
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.1e-27 127.9 210 39.5
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 1.5e-27 127.5 174 44.3
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 5.5e-27 125.6 176 47.2
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 5.5e-27 125.6 202 37.1
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 7.2e-27 125.2 174 45.4
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 6.1e-26 122.1 187 42.2
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 4.0e-25 119.4 138 50.7
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 4.0e-25 119.4 138 52.2
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 5.2e-25 119.0 177 45.2
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 1.5e-24 117.5 184 42.9
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 7.5e-24 115.2 148 48.0
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 9.8e-24 114.8 196 40.3
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 2.2e-23 113.6 155 46.5
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 6.3e-23 112.1 212 43.4
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 1.1e-22 111.3 122 56.6
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 4.1e-22 109.4 138 48.6
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 5.9e-21 105.5 105 59.0
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.1e-19 101.3 132 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 2.8e-18 96.7 148 48.0
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 2.0e-16 90.5 125 43.2
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 2.6e-16 90.1 217 33.2
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 1.3e-15 87.8 118 45.8
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 3.2e-14 83.2 164 35.4
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 7.0e-14 82.0 85 64.7
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 1.3e-12 77.8 155 32.9
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 3.9e-12 76.3 104 44.2
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 8.6e-12 75.1 273 31.5
CARHR196670 Cardamine hirsuta HOM05D004935 ORTHO05D005676 5.6e-11 72.4 56 66.1
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 7.3e-11 72.0 75 49.3
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 4.7e-10 69.3 89 47.2
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 1.4e-09 67.8 103 40.8
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 1.4e-09 67.8 91 45.1
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 6.8e-09 65.5 81 48.1
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 1.2e-08 64.7 82 48.8
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 4.9e-07 59.3 134 29.1
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 3.2e-06 56.6 116 37.1


User provided reference genes

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