Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 1.1e-57 226.5 118 100.0
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 5.4e-57 224.2 118 99.2
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 3.3e-54 214.9 118 94.1
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 7.3e-54 213.8 118 93.2
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 3.9e-47 191.4 117 83.8
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 6.6e-47 190.7 112 83.9
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 8.1e-45 183.7 117 76.9
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 2.9e-42 175.3 115 77.4
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 4.6e-40 167.9 116 70.7
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 1.5e-38 162.9 106 81.1
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 4.3e-38 161.4 117 70.9
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 7.3e-38 160.6 105 76.2
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.6e-37 159.5 104 78.8
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 1.8e-36 156.0 114 67.5
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 8.9e-36 153.7 104 74.0
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.7e-34 149.4 103 75.7
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 1.0e-31 140.2 77 89.6
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 1.3e-26 123.2 129 53.5
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 1.7e-26 122.9 71 87.3
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 8.4e-26 120.6 71 85.9
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 1.2e-24 116.7 123 50.4
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 1.6e-24 116.3 128 47.7
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 2.1e-24 115.9 120 51.7
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.1e-24 115.9 117 53.0
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 2.7e-24 115.5 67 76.1
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.7e-24 115.5 117 53.0
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.7e-24 115.5 117 53.0
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.7e-24 115.5 117 53.0
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.7e-24 115.5 117 53.0
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.5e-24 115.2 117 53.0
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 4.6e-24 114.8 122 49.2
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.8e-24 114.0 117 52.1
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.8e-24 114.0 117 52.1
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 1.0e-23 113.6 124 47.6
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 1.0e-23 113.6 121 52.9
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 1.3e-23 113.2 115 51.3
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-23 112.8 117 52.1
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 1.7e-23 112.8 115 49.6
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.3e-23 112.5 117 52.1
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 3.0e-23 112.1 115 53.0
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 1.5e-22 109.8 123 49.6
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.5e-22 109.8 126 46.0
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 1.9e-22 109.4 102 55.9
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 3.3e-22 108.6 117 48.7
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.3e-22 108.6 124 50.0
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 3.3e-22 108.6 110 51.8
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 3.3e-22 108.6 130 46.9
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 5.6e-22 107.8 118 48.3
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 5.6e-22 107.8 124 46.0
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 7.3e-22 107.5 126 46.0
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 7.3e-22 107.5 122 49.2
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 9.6e-22 107.1 123 48.0
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 9.6e-22 107.1 117 52.1
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.3e-21 106.7 124 48.4
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 1.6e-21 106.3 129 48.8
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 2.1e-21 105.9 124 49.2
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 2.1e-21 105.9 117 49.6
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.8e-21 105.5 117 51.3
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 2.8e-21 105.5 116 50.0
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 3.6e-21 105.1 118 51.7
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 3.6e-21 105.1 133 46.6
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 3.6e-21 105.1 112 50.0
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 4.8e-21 104.8 132 46.2
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 4.8e-21 104.8 132 46.2
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 4.8e-21 104.8 107 51.4
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.2e-21 104.4 117 51.3
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 6.2e-21 104.4 140 44.3
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 8.1e-21 104.0 117 50.4
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 8.1e-21 104.0 123 49.6
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 8.1e-21 104.0 131 42.0
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 8.1e-21 104.0 133 46.6
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 1.4e-20 103.2 123 45.5
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 1.4e-20 103.2 109 51.4
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 1.4e-20 103.2 136 46.3
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 2.4e-20 102.4 122 45.9
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 2.4e-20 102.4 117 45.3
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 2.4e-20 102.4 115 47.8
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 2.4e-20 102.4 122 45.9
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 3.1e-20 102.1 113 46.0
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 3.1e-20 102.1 111 49.5
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 4.0e-20 101.7 115 48.7
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 4.0e-20 101.7 118 47.5
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 6.9e-20 100.9 140 42.9
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 9.0e-20 100.5 108 51.9
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.2e-19 100.1 115 50.4
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 1.2e-19 100.1 113 48.7
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.2e-19 100.1 128 44.5
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 2.6e-19 99.0 123 46.3
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 4.5e-19 98.2 111 45.9
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 4.5e-19 98.2 128 43.8
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 7.6e-19 97.4 112 43.8
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 9.9e-19 97.1 121 45.5
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 1.3e-18 96.7 98 52.0
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 1.7e-18 96.3 131 44.3
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-18 96.3 102 52.0
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 2.2e-18 95.9 133 43.6
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 2.9e-18 95.5 117 42.7
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 3.8e-18 95.1 128 44.5
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 3.8e-18 95.1 128 46.1
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 4.9e-18 94.7 121 42.1
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 8.4e-18 94.0 141 40.4
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 8.4e-18 94.0 106 45.3
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 4.2e-17 91.7 118 46.6
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 5.4e-17 91.3 123 40.7
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 1.3e-15 86.7 87 50.6
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 3.0e-15 85.5 122 41.0
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 3.0e-15 85.5 112 45.5
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 3.9e-15 85.1 134 41.0
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 1.5e-14 83.2 63 61.9
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.3e-14 81.6 63 66.7
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 5.6e-14 81.3 117 38.5
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 9.6e-14 80.5 104 40.4
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 2.1e-13 79.3 86 47.7
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 4.8e-13 78.2 130 38.5
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 6.2e-13 77.8 93 43.0
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 1.4e-12 76.6 119 42.0
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 5.3e-12 74.7 68 54.4
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 9.0e-12 73.9 95 46.3
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 1.2e-11 73.6 106 39.6
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 1.2e-11 73.6 111 40.5
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 1.5e-11 73.2 74 48.6
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.4e-11 72.0 83 47.0
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 4.5e-11 71.6 126 34.9
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 3.2e-09 65.5 51 60.8
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 5.5e-09 64.7 83 43.4
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 7.1e-09 64.3 52 61.5
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 9.3e-09 63.9 52 61.5
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.7e-08 62.4 83 44.6
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 3.0e-07 58.9 61 52.5
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 6.7e-07 57.8 46 60.9
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 1.1e-06 57.0 55 52.7


User provided reference genes

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