Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p08140 Brassica napus HOM05D004557 ORTHO05D005258 8.1e-230 800.0 405 100.0
BcaC03g18467 Brassica carinata HOM05D004557 ORTHO05D005258 4.5e-228 794.3 405 99.5
BolC2t06737H Brassica oleracea HOM05D004557 ORTHO05D005258 2.6e-220 768.5 406 95.8
BraA02t05309Z Brassica rapa HOM05D004557 ORTHO05D005258 3.0e-216 755.0 405 93.8
A02p03380 Brassica napus HOM05D004557 ORTHO05D005258 4.1e-213 744.6 405 92.8
BcaNung02221 Brassica carinata HOM05D004557 ORTHO05D005258 3.1e-173 612.1 413 78.2
A10p22940 Brassica napus HOM05D004557 ORTHO05D005258 7.4e-98 361.7 427 49.2
BraA10t44362Z Brassica rapa HOM05D004557 ORTHO05D005258 7.4e-98 361.7 427 49.2
C09p60890 Brassica napus HOM05D004557 ORTHO05D005258 2.9e-94 349.7 427 48.2
BolC9t58932H Brassica oleracea HOM05D004557 ORTHO05D005258 5.0e-94 349.0 428 48.6
Sp6g28040 Schrenkiella parvula HOM05D004557 ORTHO05D005258 5.0e-86 322.4 421 46.1
Thhalv10013525m.g Eutrema salsugineum HOM05D004557 ORTHO05D005258 9.7e-82 308.1 438 41.8
AL6G26980 Arabidopsis lyrata HOM05D004557 ORTHO05D005258 1.7e-78 297.4 434 43.8
AT5G16100 Arabidopsis thaliana HOM05D004557 ORTHO05D005258 8.5e-70 268.5 446 38.8
Carub.0008s1244 Capsella rubella HOM05D004557 ORTHO05D005258 1.1e-61 241.5 400 39.2
Aa31LG11G13510 Aethionema arabicum HOM05D004557 ORTHO05D005258 1.2e-55 221.5 408 36.0
CARHR197200 Cardamine hirsuta HOM05D004557 ORTHO05D005258 6.2e-44 182.6 289 41.9
THA.LOC104827156 Tarenaya hassleriana HOM05D004557 ORTHO05D005258 2.0e-42 177.6 463 32.2
Carub.0006s1429 Capsella rubella HOM05D004557 ORTHO05D005258 5.2e-35 152.9 339 35.4
Carub.0055s0004 Capsella rubella HOM05D004557 ORTHO05D005258 4.4e-34 149.8 319 34.5
Carub.0002s0764 Capsella rubella HOM05D004557 ORTHO05D005258 1.3e-33 148.3 339 33.3
SGA_v2.0_scaffold20G09180 Striga asiatica HOM05D004557 ORTHO05D005258 1.6e-31 141.4 357 30.8
MD15G1052600 Malus domestica HOM05D004557 ORTHO05D005258 2.1e-31 141.0 272 34.2
Hma1.2p1_0231F.1_g097480 Hydrangea macrophylla HOM05D004557 ORTHO05D005258 7.8e-31 139.0 336 31.8
MD08G1069500 Malus domestica HOM05D004557 ORTHO05D005258 6.6e-30 136.0 335 31.3
CiPaw.09G214400 Carya illinoinensis HOM05D004557 ORTHO05D005258 1.5e-29 134.8 236 31.8
Dinv06254 Davidia involucrata HOM05D004557 ORTHO05D005258 1.5e-29 134.8 274 31.8
Dinv15528 Davidia involucrata HOM05D004557 ORTHO05D005258 1.5e-29 134.8 274 31.8
Dinv29489 Davidia involucrata HOM05D004557 ORTHO05D005258 7.3e-29 132.5 274 31.0
CSS0012791 Camellia sinensis var. sinensis HOM05D004557 ORTHO05D005258 1.2e-28 131.7 267 29.6
Potri.006G223100 Populus trichocarpa HOM05D004557 ORTHO05D005258 1.6e-28 131.3 387 27.9
ClCG08G009910 Citrullus lanatus HOM05D004557 ORTHO05D005258 2.8e-28 130.6 305 29.8
Gohir.D08G188200 Gossypium hirsutum HOM05D004557 ORTHO05D005258 6.2e-28 129.4 232 33.2
Aqoxy7G01097 Aquilegia oxysepala HOM05D004557 ORTHO05D005258 8.1e-28 129.0 262 34.4
CiPaw.15G089600 Carya illinoinensis HOM05D004557 ORTHO05D005258 8.1e-28 129.0 237 32.1
CiPaw.15G089700 Carya illinoinensis HOM05D004557 ORTHO05D005258 8.1e-28 129.0 237 32.1
PSO388G0001 Papaver somniferum HOM05D004557 ORTHO05D005258 8.1e-28 129.0 350 28.9
Prupe.1G406500 Prunus persica HOM05D004557 ORTHO05D005258 8.1e-28 129.0 343 30.6
Rhsim01G0109000 Rhododendron simsii HOM05D004557 ORTHO05D005258 1.8e-27 127.9 269 30.9
Cpa.g.sc126.43 Carica papaya HOM05D004557 ORTHO05D005258 2.4e-27 127.5 389 28.5
Cfa018005 Carpinus fangiana HOM05D004557 ORTHO05D005258 2.4e-27 127.5 348 28.4
CiPaw.15G090600 Carya illinoinensis HOM05D004557 ORTHO05D005258 2.4e-27 127.5 237 31.6
HanXRQChr09g0248091 Helianthus annuus HOM05D004557 ORTHO05D005258 2.4e-27 127.5 244 30.3
Lalb_Chr19g0132651 Lupinus albus HOM05D004557 ORTHO05D005258 2.4e-27 127.5 271 29.9
Sabra06G0172400 Salix brachista HOM05D004557 ORTHO05D005258 3.1e-27 127.1 234 32.5
Nn5g28590 Nelumbo nucifera HOM05D004557 ORTHO05D005258 5.2e-27 126.3 347 29.7
QL02p000341 Quercus lobata HOM05D004557 ORTHO05D005258 1.2e-26 125.2 273 29.3
Sed0027657 Sechium edule HOM05D004557 ORTHO05D005258 1.5e-26 124.8 260 30.0
CsaV3_6G032010 Cucumis sativus L. HOM05D004557 ORTHO05D005258 2.0e-26 124.4 264 29.5
unitig_26.g8849 Utricularia gibba HOM05D004557 ORTHO05D005258 2.0e-26 124.4 240 32.9
SGA_v2.0_scaffold98G29377 Striga asiatica HOM05D004557 ORTHO05D005258 2.6e-26 124.0 267 31.8
CiPaw.15G090500 Carya illinoinensis HOM05D004557 ORTHO05D005258 3.4e-26 123.6 237 32.5
Gorai.004G198100 Gossypium raimondii HOM05D004557 ORTHO05D005258 4.4e-26 123.2 241 32.4
CANSAT21G2041 Cannabis sativa HOM05D004557 ORTHO05D005258 5.8e-26 122.9 243 31.7
MELO3C011480.2 Cucumis melo HOM05D004557 ORTHO05D005258 7.6e-26 122.5 304 28.9
RcHm_v2.0_Chr7g0228051 Rosa chinensis HOM05D004557 ORTHO05D005258 7.6e-26 122.5 296 30.4
Nitab4.5_0004953g0040 Nicotiana tabacum HOM05D002542 ORTHO05D010145 4.9e-25 119.8 250 31.2
Lalb_Chr08g0244871 Lupinus albus HOM05D004557 ORTHO05D005258 8.4e-25 119.0 295 28.5
Thecc.03G250200 Theobroma cacao HOM05D004557 ORTHO05D005258 8.4e-25 119.0 327 31.5
TPR.G3531 Trifolium pratense HOM05D004557 ORTHO05D005258 1.1e-24 118.6 282 30.9
ECA240G2282 Erigeron canadensis HOM05D004557 ORTHO05D005258 2.4e-24 117.5 244 28.7
Atru.chr7.1871 Acer truncatum HOM05D004557 ORTHO05D005258 4.2e-24 116.7 241 32.4
Lsat_1_v5_gn_7_60080 Lactuca sativa HOM05D004557 ORTHO05D005258 4.2e-24 116.7 230 30.4
Migut.B01423 Erythranthe guttata HOM05D004557 ORTHO05D005258 7.1e-24 115.9 268 29.9
vmacro20759 Vaccinium macrocarpon HOM05D004557 ORTHO05D005258 9.2e-24 115.5 265 30.2
Psat5g030600 Pisum sativum HOM05D004557 ORTHO05D005258 2.7e-23 114.0 247 28.3
Psat7g051600 Pisum sativum HOM05D004557 ORTHO05D005258 4.6e-23 113.2 236 28.4
Sopen08g017790 Solanum pennellii HOM05D004557 ORTHO05D005258 4.6e-23 113.2 238 30.3
arahy.Tifrunner.gnm1.ann1.R4HSFZ Arachis hypogaea HOM05D004557 ORTHO05D005258 6.0e-23 112.8 346 27.5
COL.COLO4_37167 Corchorus olitorius HOM05D004557 ORTHO05D005258 7.8e-23 112.5 321 27.4
Solyc08g062200.3 Solanum lycopersicum HOM05D002542 ORTHO05D010145 7.8e-23 112.5 242 30.6
CAN.G1245.2 Capsicum annuum HOM05D004557 ORTHO05D005258 1.0e-22 112.1 365 27.9
arahy.Tifrunner.gnm1.ann1.50HX4L Arachis hypogaea HOM05D004557 ORTHO05D005258 1.3e-22 111.7 347 27.4
PSO210G7071 Papaver somniferum HOM05D004557 ORTHO05D005258 1.3e-22 111.7 320 27.8
FAN08G0395 Fragaria x ananassa HOM05D004557 ORTHO05D005258 1.7e-22 111.3 250 30.8
FAN13G2684 Fragaria x ananassa HOM05D004557 ORTHO05D005258 3.9e-22 110.2 250 29.6
Glyma.06G198300 Glycine max HOM05D004557 ORTHO05D005258 3.9e-22 110.2 244 30.7
FAN04G2671 Fragaria x ananassa HOM05D004557 ORTHO05D005258 5.1e-22 109.8 250 30.8
Glyma.20G016400 Glycine max HOM05D004557 ORTHO05D005258 8.7e-22 109.0 244 30.7
FvH4_5g32040 Fragaria vesca HOM05D004557 ORTHO05D005258 1.9e-21 107.8 250 29.6
FAN18G0835 Fragaria x ananassa HOM05D004557 ORTHO05D005258 1.9e-21 107.8 250 29.6
SalBow5G2684 Salvia bowleyana HOM05D004557 ORTHO05D005258 1.9e-21 107.8 255 29.0
Ca_15841_v3 Cicer arietinum L. HOM05D002542 ORTHO05D010145 7.3e-21 105.9 196 30.6
Peaxi162Scf00809g00213 Petunia axillaris HOM05D002542 ORTHO05D010145 1.6e-20 104.8 387 25.3
FAN06G3367 Fragaria x ananassa HOM05D004557 ORTHO05D005258 2.1e-20 104.4 286 28.7
HPP92_024782 Vanilla planifolia HOM05D004557 ORTHO05D005258 2.1e-20 104.4 240 30.8
ClCG05G018170 Citrullus lanatus HOM05D004557 ORTHO05D005258 4.7e-20 103.2 267 30.0
Lj1g0020695 Lotus japonicus HOM05D004557 ORTHO05D005258 4.7e-20 103.2 238 27.3
Sed0013662 Sechium edule HOM05D004557 ORTHO05D005258 4.7e-20 103.2 260 28.1
Nitab4.5_0007748g0010 Nicotiana tabacum HOM05D002542 ORTHO05D010145 8.1e-20 102.4 234 30.8
Cc08_g01350 Coffea canephora HOM05D004557 ORTHO05D005258 1.4e-19 101.7 318 26.4
Haze_18125 Corylus avellana HOM05D004557 ORTHO05D005258 2.4e-19 100.9 177 35.0
CDE05G1912 Ceratophyllum demersum HOM05D004557 ORTHO05D005258 3.1e-19 100.5 240 31.7
Actinidia25701 Actinidia chinensis HOM05D004557 ORTHO05D005258 9.0e-19 99.0 305 26.9
PGSC0003DMG400021751 Solanum tuberosum HOM05D004557 ORTHO05D005258 9.0e-19 99.0 335 24.8
Medtr3g465110 Medicago truncatula HOM05D004557 ORTHO05D005258 2.0e-18 97.8 230 27.8
SEGI_37362 Sequoiadendron giganteum HOM05D004557 ORTHO05D005258 3.4e-18 97.1 275 30.5
Glyma.04G054800 Glycine max HOM05D004557 ORTHO05D005258 4.4e-18 96.7 236 27.1
VMungo1309G0311 Vigna mungo HOM05D004557 ORTHO05D005258 1.3e-17 95.1 235 28.5
Eucgr.J00345 Eucalyptus grandis HOM05D004557 ORTHO05D005258 6.4e-17 92.8 214 31.3
Zm00001eb133740 Zea mays HOM05D004557 ORTHO05D005258 6.4e-17 92.8 250 28.8
Mapoly0049s0118 Marchantia polymorpha HOM05D004557 ORTHO05D005258 2.4e-16 90.9 224 29.9
Nn6g35588 Nelumbo nucifera HOM05D004557 ORTHO05D005258 3.2e-16 90.5 329 27.4
Glyma.20G016500 Glycine max HOM05D004557 ORTHO05D005258 4.2e-16 90.1 237 27.0
Pp3c24_6460 Physcomitrium patens HOM05D004557 ORTHO05D005258 7.1e-16 89.4 257 29.2
VMungo1309G1176 Vigna mungo HOM05D004557 ORTHO05D005258 4.6e-15 86.7 259 26.6
CARHR197210 Cardamine hirsuta HOM05D004557 ORTHO05D005258 7.8e-15 85.9 94 46.8
Eucgr.L01064 Eucalyptus grandis HOM05D004557 ORTHO05D005258 7.8e-15 85.9 214 29.4
CsaV3_4G035930 Cucumis sativus L. HOM05D004557 ORTHO05D005258 1.3e-14 85.1 106 45.3
Lj7A235T21 Lonicera japonica HOM05D004557 ORTHO05D005258 3.0e-14 84.0 319 24.8
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.9e-13 81.3 281 25.3
DCAR_000813 Daucus carota HOM05D004557 ORTHO05D005258 3.3e-13 80.5 243 28.8
Thecc.09G060300 Theobroma cacao HOM05D004557 ORTHO05D005258 5.6e-13 79.7 257 28.0
TAR383G0817 Trochodendron aralioides HOM05D004557 ORTHO05D005258 5.6e-13 79.7 208 28.4
unitig_750.g28413 Utricularia gibba HOM05D004557 ORTHO05D005258 1.3e-12 78.6 135 34.1
MELO3C016901.2 Cucumis melo HOM05D004557 ORTHO05D005258 4.8e-12 76.6 91 44.0
THA.LOC104820951 Tarenaya hassleriana HOM05D004557 ORTHO05D005258 6.2e-12 76.3 211 27.0
THA.LOC104821164 Tarenaya hassleriana HOM05D004557 ORTHO05D005258 2.4e-11 74.3 69 49.3
SHI18819 Sapria himalayana HOM05D004557 ORTHO05D001357 3.1e-11 73.9 95 42.1
Manes.03G052300 Manihot esculenta HOM05D004557 ORTHO05D005258 9.0e-11 72.4 95 34.7
SEGI_36367 Sequoiadendron giganteum HOM05D004557 ORTHO05D005258 9.0e-11 72.4 101 37.6
Phvul.009G080800 Phaseolus vulgaris HOM05D004557 ORTHO05D005258 1.2e-10 72.0 270 23.7
CBR_g4496 Chara braunii HOM05D004557 ORTHO05D005258 1.5e-10 71.6 259 25.5
Thhalv10009656m.g Eutrema salsugineum HOM05D004557 ORTHO05D005258 2.6e-10 70.9 76 46.1
FAN10G1667 Fragaria x ananassa HOM05D004557 ORTHO05D005258 3.4e-10 70.5 163 28.2
SGA_v2.0_scaffold64G21858 Striga asiatica HOM05D000448 ORTHO05D000291 5.8e-10 69.7 170 32.9
Eucgr.I00413 Eucalyptus grandis HOM05D004557 ORTHO05D005258 7.6e-10 69.3 214 27.1
SalBow4G2609 Salvia bowleyana HOM05D004557 ORTHO05D005258 7.6e-10 69.3 165 26.1
Pp3c20_5720 Physcomitrium patens HOM05D032039 ORTHO05D005258 3.8e-09 67.0 79 39.2
Ciclev10010497m.g Citrus clementina HOM05D004557 ORTHO05D005258 6.4e-09 66.2 60 50.0
Oeu037990.1 Olea europaea HOM05D004557 ORTHO05D005258 6.4e-09 66.2 86 34.9
FvH4_7g07010 Fragaria vesca HOM05D004557 ORTHO05D005258 1.1e-08 65.5 104 33.7
Glyma.20G016100 Glycine max HOM05D004557 ORTHO05D005258 1.1e-08 65.5 100 33.0
Thecc.09G060800 Theobroma cacao HOM05D004557 ORTHO05D005258 1.9e-08 64.7 106 35.8
Rhsim09G0050500 Rhododendron simsii HOM05D004557 ORTHO05D005258 4.6e-07 60.1 169 26.0
TWI34G1499 Tripterygium wilfordii HOM05D004557 ORTHO05D005258 4.6e-07 60.1 115 28.7
Sc23g0004270 Simmondsia chinensis HOM05D004557 ORTHO05D005258 6.0e-07 59.7 122 28.7
CBR_g4065 Chara braunii HOM05D001516 ORTHO05D001357 2.3e-06 57.8 60 43.3
PSO210G6016 Papaver somniferum HOM05D004557 ORTHO05D005258 2.3e-06 57.8 142 26.8
A10p10520 Brassica napus HOM05D001516 ORTHO05D001357 3.9e-06 57.0 124 33.9
CARHR266050 Cardamine hirsuta HOM05D001516 ORTHO05D001357 3.9e-06 57.0 116 35.3
Thhalv10015321m.g Eutrema salsugineum HOM05D001516 ORTHO05D001357 3.9e-06 57.0 157 29.3
Os04g0564000 Oryza sativa ssp. japonica HOM05D001516 ORTHO05D001357 3.9e-06 57.0 110 31.8
Psat5g182200 Pisum sativum HOM05D001516 ORTHO05D001357 5.1e-06 56.6 139 30.9
SMO228G0087 Selaginella moellendorffii HOM05D004557 ORTHO05D005258 6.7e-06 56.2 55 45.5
BcaB08g35663 Brassica carinata HOM05D001516 ORTHO05D001357 8.7e-06 55.8 124 33.1
CAN.G481.21 Capsicum annuum HOM05D001516 ORTHO05D001357 8.7e-06 55.8 71 36.6


User provided reference genes

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