Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.9e-171 605.9 343 100.0
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.9e-171 605.9 343 100.0
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 6.6e-164 580.9 359 94.2
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 1.6e-157 559.7 345 93.6
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 3.9e-156 555.1 346 93.4
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 1.1e-145 520.4 345 87.8
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.6e-130 469.9 345 79.1
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 1.8e-129 466.5 346 78.3
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 4.0e-129 465.3 359 75.8
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 2.0e-128 463.0 359 75.5
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 2.0e-128 463.0 352 77.6
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 2.6e-128 462.6 353 75.9
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 2.2e-127 459.5 352 79.5
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 2.2e-127 459.5 352 79.5
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 4.2e-126 455.3 347 74.9
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 6.0e-125 451.4 343 76.4
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 5.1e-124 448.4 359 72.4
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 8.1e-122 441.0 347 78.7
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.5e-120 436.8 346 75.1
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 1.3e-119 433.7 353 77.6
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.9e-118 429.9 347 77.2
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 2.7e-117 426.0 346 76.0
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 3.8e-111 405.6 250 82.8
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 3.3e-91 339.3 346 64.7
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 6.3e-82 308.5 256 69.1
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 7.0e-73 278.5 249 63.5
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 4.5e-72 275.8 341 52.2
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.5e-70 270.0 345 51.0
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 4.8e-66 255.8 259 58.7
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 6.3e-58 228.8 348 47.7
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.4e-57 226.9 262 53.1
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 7.0e-57 225.3 337 44.5
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 1.2e-56 224.6 251 53.8
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.2e-56 224.6 241 56.8
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.2e-56 224.6 343 46.1
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 2.7e-56 223.4 337 44.8
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 4.5e-56 222.6 241 56.4
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 3.9e-55 219.5 337 45.1
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 5.0e-55 219.2 337 45.1
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 6.6e-55 218.8 248 54.0
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 2.5e-54 216.9 340 45.3
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 2.5e-54 216.9 237 55.7
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 4.3e-54 216.1 251 55.0
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 4.3e-54 216.1 234 57.3
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 4.3e-54 216.1 343 45.8
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.2e-53 214.5 238 55.9
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 2.8e-53 213.4 251 55.4
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 1.8e-52 210.7 267 52.1
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 5.2e-52 209.1 342 45.9
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 5.2e-52 209.1 342 44.2
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.2e-51 208.0 240 55.0
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 2.0e-51 207.2 261 51.3
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.0e-51 207.2 345 43.8
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 2.0e-51 207.2 242 53.7
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 2.6e-51 206.8 259 52.1
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 2.6e-51 206.8 227 55.9
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 3.4e-51 206.5 330 47.0
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.4e-51 206.1 261 52.5
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 7.5e-51 205.3 255 54.5
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 7.5e-51 205.3 344 45.3
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 1.3e-50 204.5 245 52.7
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.7e-50 204.1 262 51.9
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 2.2e-50 203.8 234 54.7
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.2e-50 203.8 261 51.7
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 4.9e-50 202.6 346 41.0
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 4.9e-50 202.6 235 53.6
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 4.9e-50 202.6 331 44.4
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 8.3e-50 201.8 227 56.4
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 8.3e-50 201.8 227 56.4
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.4e-49 201.1 343 46.4
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.4e-49 201.1 228 55.3
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 1.9e-49 200.7 266 51.5
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 2.4e-49 200.3 325 52.3
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.2e-49 199.9 227 55.9
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 7.0e-49 198.7 339 40.4
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 7.0e-49 198.7 342 40.6
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 9.2e-49 198.4 247 52.2
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 1.2e-48 198.0 344 41.9
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 1.2e-48 198.0 344 41.9
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.2e-48 198.0 252 51.6
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.7e-48 196.8 241 52.7
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 3.5e-48 196.4 337 42.7
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 3.5e-48 196.4 225 53.8
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 4.6e-48 196.1 249 51.0
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 4.6e-48 196.1 345 39.7
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 1.0e-47 194.9 233 51.5
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 1.3e-47 194.5 248 52.0
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 3.0e-47 193.4 235 51.1
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 3.9e-47 193.0 233 51.5
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 3.9e-47 193.0 225 52.9
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 5.0e-47 192.6 277 48.7
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 6.6e-47 192.2 227 53.3
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 6.6e-47 192.2 267 49.4
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 6.6e-47 192.2 268 47.4
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 6.6e-47 192.2 264 49.2
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 6.6e-47 192.2 264 47.7
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.1e-46 191.4 262 49.2
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 1.9e-46 190.7 238 51.3
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.5e-46 190.3 343 42.0
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 2.5e-46 190.3 258 49.2
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 4.3e-46 189.5 216 56.0
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 4.3e-46 189.5 274 48.2
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 7.3e-46 188.7 341 41.1
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 9.5e-46 188.3 247 49.4
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 9.5e-46 188.3 267 53.9
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 9.5e-46 188.3 261 48.7
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 3.6e-45 186.4 265 44.9
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 4.7e-45 186.0 256 48.0
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 6.2e-45 185.7 341 41.1
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 6.2e-45 185.7 260 46.9
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 2.3e-44 183.7 234 50.4
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 4.0e-44 183.0 245 51.8
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 5.2e-44 182.6 284 45.8
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 8.9e-44 181.8 299 46.5
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 1.2e-43 181.4 255 47.8
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 1.2e-43 181.4 251 47.0
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.5e-43 181.0 217 52.1
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 5.8e-43 179.1 255 48.6
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.7e-42 177.6 249 49.8
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 3.7e-42 176.4 256 47.7
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 3.7e-42 176.4 335 38.8
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 6.4e-42 175.6 179 58.7
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.4e-41 174.5 345 39.7
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 1.9e-41 174.1 233 48.5
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 3.2e-41 173.3 222 51.4
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 3.2e-41 173.3 242 47.9
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 4.1e-41 172.9 259 43.2
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 9.2e-41 171.8 234 50.0
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.2e-40 171.4 260 46.2
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 1.6e-40 171.0 267 44.6
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 2.7e-40 170.2 262 46.2
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.5e-40 169.9 263 45.6
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 6.0e-40 169.1 370 35.9
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 7.8e-40 168.7 273 45.1
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.0e-39 168.3 274 44.5
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 5.1e-39 166.0 308 39.6
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 1.1e-38 164.9 259 46.3
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 1.1e-38 164.9 274 43.1
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 4.3e-38 162.9 262 45.8
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 1.6e-37 161.0 228 49.6
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 2.1e-37 160.6 259 45.9
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 2.8e-37 160.2 149 63.1
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.1e-36 158.3 237 45.6
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 2.3e-36 157.1 178 55.1
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 4.0e-36 156.4 238 46.6
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 2.9e-34 150.2 337 40.1
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 3.7e-34 149.8 378 33.6
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 6.0e-32 142.5 267 39.0
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 3.6e-29 133.3 150 56.0
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 3.1e-28 130.2 179 47.5
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 1.7e-23 114.4 212 40.6
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 8.7e-23 112.1 237 38.0
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 3.3e-22 110.2 232 37.5
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 5.6e-22 109.4 243 37.9
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 6.2e-21 105.9 109 56.9
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 3.1e-20 103.6 103 56.3
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 9.9e-19 98.6 162 41.4
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 3.8e-18 96.7 202 34.2
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 1.4e-17 94.7 129 45.7
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.6e-16 91.3 151 42.4
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 6.2e-13 79.3 57 66.7
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 3.5e-08 63.5 65 58.5


User provided reference genes

Program Settings