Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 2.4e-63 245.4 125 100.0
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 2.4e-63 245.4 125 100.0
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 2.4e-63 245.4 125 100.0
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 3.8e-61 238.0 125 96.0
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 3.8e-61 238.0 125 96.0
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 5.0e-61 237.7 125 96.0
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 8.5e-61 236.9 125 95.2
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 4.2e-60 234.6 125 93.6
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 5.5e-60 234.2 125 94.4
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 7.2e-60 233.8 125 94.4
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 7.2e-60 233.8 125 94.4
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 7.2e-60 233.8 125 94.4
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 4.7e-59 231.1 120 96.7
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 6.1e-59 230.7 125 92.0
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 1.8e-58 229.2 125 92.0
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 3.9e-58 228.0 125 92.0
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 8.8e-58 226.9 125 91.2
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 8.2e-56 220.3 125 88.0
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 7.7e-54 213.8 118 91.5
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 1.1e-52 209.9 125 82.4
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 1.3e-48 196.4 108 90.7
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 3.1e-47 191.8 108 88.9
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 1.7e-45 186.0 124 72.6
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 5.0e-45 184.5 124 75.0
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 5.0e-45 184.5 118 75.4
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 5.0e-45 184.5 125 72.0
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 6.5e-45 184.1 125 73.6
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 1.9e-44 182.6 119 73.1
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 2.5e-44 182.2 119 73.9
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 3.2e-44 181.8 125 71.2
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 7.2e-44 180.6 125 72.8
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 9.4e-44 180.3 124 70.2
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 9.4e-44 180.3 125 72.0
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 9.4e-44 180.3 125 72.0
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 9.4e-44 180.3 123 72.4
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 9.4e-44 180.3 118 73.7
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 1.2e-43 179.9 125 69.6
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 2.1e-43 179.1 124 68.5
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 2.1e-43 179.1 124 68.5
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 2.7e-43 178.7 125 68.8
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 3.6e-43 178.3 123 71.5
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 4.7e-43 177.9 121 71.9
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 1.0e-42 176.8 125 69.6
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 1.0e-42 176.8 125 68.0
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 1.0e-42 176.8 124 70.2
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 1.8e-42 176.0 120 72.5
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 4.0e-42 174.9 125 65.6
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 5.2e-42 174.5 120 71.7
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 5.2e-42 174.5 120 71.7
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 8.8e-42 173.7 125 69.6
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 1.5e-41 172.9 125 68.0
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 2.0e-41 172.6 124 70.2
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 2.0e-41 172.6 118 70.3
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 2.6e-41 172.2 118 72.0
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 5.7e-41 171.0 125 66.4
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 7.5e-41 170.6 119 70.6
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 9.8e-41 170.2 125 67.2
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 9.8e-41 170.2 124 66.1
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 9.8e-41 170.2 119 68.1
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 1.3e-40 169.9 125 64.0
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 1.7e-40 169.5 142 62.7
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.7e-40 169.5 118 71.2
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 2.2e-40 169.1 125 65.6
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 2.8e-40 168.7 118 72.0
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 4.8e-40 167.9 119 68.1
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 8.3e-40 167.2 123 65.0
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 1.1e-39 166.8 119 70.6
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 1.1e-39 166.8 125 65.6
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 1.4e-39 166.4 119 68.1
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 1.8e-39 166.0 124 65.3
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 2.4e-39 165.6 119 67.2
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 4.1e-39 164.9 118 71.2
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 4.1e-39 164.9 118 68.6
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 4.1e-39 164.9 125 66.4
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 5.4e-39 164.5 124 63.7
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 5.4e-39 164.5 113 69.0
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 7.0e-39 164.1 123 65.9
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 7.0e-39 164.1 125 64.0
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 1.6e-38 162.9 118 70.3
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 1.6e-38 162.9 124 64.5
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 1.6e-38 162.9 117 66.7
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 4.5e-38 161.4 118 69.5
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 7.7e-38 160.6 125 63.2
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 1.3e-37 159.8 120 69.2
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 2.9e-37 158.7 120 64.2
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 3.8e-37 158.3 117 65.8
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 1.1e-36 156.8 105 70.5
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 1.5e-36 156.4 120 66.7
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 4.2e-36 154.8 120 65.0
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 5.5e-36 154.5 105 70.5
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.2e-35 153.3 106 71.7
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 1.0e-34 150.2 147 54.4
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 2.3e-34 149.1 121 57.9
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 3.0e-34 148.7 105 68.6
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 6.8e-34 147.5 118 61.0
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 8.9e-34 147.1 119 59.7
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 1.2e-33 146.7 107 66.4
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 2.0e-33 146.0 135 59.3
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 2.6e-33 145.6 145 53.8
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 1.7e-32 142.9 113 62.8
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 4.9e-32 141.4 129 56.6
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 1.2e-30 136.7 119 60.5
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 1.2e-30 136.7 118 61.0
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 1.6e-30 136.3 131 55.7
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 1.6e-30 136.3 119 57.1
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 1.6e-30 136.3 101 65.3
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 2.7e-30 135.6 127 50.4
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 3.8e-29 131.7 217 38.7
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 6.6e-29 131.0 88 72.7
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 7.3e-28 127.5 125 54.4
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 9.5e-28 127.1 89 66.3
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 1.4e-26 123.2 90 72.2
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 4.0e-26 121.7 106 60.4
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 3.7e-24 115.2 105 55.2
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 1.4e-23 113.2 113 53.1
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 2.4e-23 112.5 72 73.6
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 3.2e-23 112.1 68 76.5
Solyc02g086780.4 Solanum lycopersicum HOM05D006084 ORTHO05D007449 1.2e-22 110.2 81 67.9
Nitab4.5_0006281g0070 Nicotiana tabacum HOM05D006084 ORTHO05D007449 3.3e-20 102.1 74 68.9
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 5.6e-20 101.3 74 62.2
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 4.7e-19 98.2 121 43.8
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 1.8e-18 96.3 117 41.0
A10p23960 Brassica napus HOM05D006084 ORTHO05D007449 7.5e-17 90.9 144 43.8
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 2.2e-16 89.4 81 49.4
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 3.7e-16 88.6 60 71.7
MELO3C033557.2 Cucumis melo HOM05D006084 ORTHO05D007449 1.1e-15 87.0 95 50.5
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 7.8e-14 80.9 68 57.4
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 1.1e-10 70.5 45 71.1
SEGI_25092 Sequoiadendron giganteum HOM05D006084 ORTHO05D007449 8.9e-10 67.4 64 45.3


User provided reference genes

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