Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p06660 Brassica napus HOM05D000825 ORTHO05D033059 5.0e-50 200.7 93 100.0
BolC2t06608H Brassica oleracea HOM05D000825 ORTHO05D033059 7.5e-38 160.2 96 85.4
Sp6g29750 Schrenkiella parvula HOM05D000825 ORTHO05D003684 3.9e-18 94.7 52 78.8
BcaNung03168 Brassica carinata HOM05D000825 ORTHO05D003684 1.9e-17 92.4 48 85.4
BcaB08g36979 Brassica carinata HOM05D000825 ORTHO05D003684 2.5e-17 92.0 52 82.7
A10p24210 Brassica napus HOM05D000825 ORTHO05D003684 2.5e-17 92.0 52 82.7
C09p62900 Brassica napus HOM05D000825 ORTHO05D003684 2.5e-17 92.0 52 82.7
BolC9t59127H Brassica oleracea HOM05D000825 ORTHO05D003684 2.5e-17 92.0 52 82.7
BraA10t44486Z Brassica rapa HOM05D000825 ORTHO05D003684 2.5e-17 92.0 52 82.7
BcaB08g36972 Brassica carinata HOM05D000825 ORTHO05D003684 3.3e-17 91.7 51 84.3
Thhalv10014472m.g Eutrema salsugineum HOM05D000825 ORTHO05D003684 2.1e-16 89.0 51 78.4
AL6G24965 Arabidopsis lyrata HOM05D000825 ORTHO05D003684 1.4e-15 86.3 52 75.0
CARHR199050 Cardamine hirsuta HOM05D000825 ORTHO05D003684 2.6e-14 82.0 51 68.6
Carub.0006s1248 Capsella rubella HOM05D000825 ORTHO05D003684 3.4e-14 81.6 58 67.2
AT5G14285 Arabidopsis thaliana HOM05D000825 ORTHO05D003684 5.8e-14 80.9 52 71.2
Aa31LG11G15070 Aethionema arabicum HOM05D000825 ORTHO05D003684 1.4e-12 76.3 51 62.7
BcaC03g13503 Brassica carinata HOM05D000825 ORTHO05D003684 7.1e-12 73.9 55 74.5
Prupe.3G301200 Prunus persica HOM05D000825 ORTHO05D003684 6.0e-11 70.9 48 68.8
QL02p072697 Quercus lobata HOM05D000825 ORTHO05D003684 1.3e-10 69.7 51 62.7
RcHm_v2.0_Chr2g0174621 Rosa chinensis HOM05D000825 ORTHO05D003684 1.3e-10 69.7 51 64.7
Phvul.008G150000 Phaseolus vulgaris HOM05D000825 ORTHO05D003684 1.7e-10 69.3 51 62.7
HanXRQChr09g0255951 Helianthus annuus HOM05D000825 ORTHO05D003684 2.3e-10 68.9 50 62.0
FAN05G0249 Fragaria x ananassa HOM05D000825 ORTHO05D003684 3.0e-10 68.6 51 60.8
Cfa007265 Carpinus fangiana HOM05D000825 ORTHO05D003684 5.1e-10 67.8 51 60.8
Sp2g15180 Schrenkiella parvula HOM05D000825 ORTHO05D003684 5.1e-10 67.8 52 50.0
BcaC06g31101 Brassica carinata HOM05D000825 ORTHO05D003684 6.6e-10 67.4 52 50.0
FAN09G3672 Fragaria x ananassa HOM05D000336 ORTHO05D002301 6.6e-10 67.4 51 60.8
Hma1.2p1_0279F.1_g112350 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 6.6e-10 67.4 51 58.8
Lalb_Chr14g0363141 Lupinus albus HOM05D000825 ORTHO05D003684 6.6e-10 67.4 51 60.8
Potri.008G178800 Populus trichocarpa HOM05D000825 ORTHO05D003684 1.1e-09 66.6 52 55.8
VMungo1383G1969 Vigna mungo HOM05D000825 ORTHO05D003684 1.1e-09 66.6 51 60.8
A06p42340 Brassica napus HOM05D000825 ORTHO05D003684 1.5e-09 66.2 52 48.1
C07p35000 Brassica napus HOM05D000825 ORTHO05D003684 1.5e-09 66.2 52 48.1
BraA06t27149Z Brassica rapa HOM05D000825 ORTHO05D003684 1.5e-09 66.2 52 48.1
Atru.chr6.2498 Acer truncatum HOM05D000825 ORTHO05D003684 1.9e-09 65.9 50 58.0
Ah.06g195630 Amaranthus hybridus HOM05D000825 ORTHO05D003684 1.9e-09 65.9 46 60.9
AL5G14610 Arabidopsis lyrata HOM05D000825 ORTHO05D003684 1.9e-09 65.9 52 51.9
CARHR146940 Cardamine hirsuta HOM05D000825 ORTHO05D003684 1.9e-09 65.9 52 51.9
PGR083G2872 Punica granatum HOM05D000825 ORTHO05D003684 1.9e-09 65.9 47 59.6
VMungo0464G1017 Vigna mungo HOM05D000825 ORTHO05D003684 1.9e-09 65.9 51 58.8
AL5G16450 Arabidopsis lyrata HOM05D000825 ORTHO05D003684 2.5e-09 65.5 47 57.4
AT3G27270 Arabidopsis thaliana HOM05D000825 ORTHO05D003684 2.5e-09 65.5 47 57.4
Sc03g0006950 Simmondsia chinensis HOM05D000825 ORTHO05D003684 2.5e-09 65.5 47 57.4
Sc04g0009930 Simmondsia chinensis HOM05D000825 ORTHO05D003684 2.5e-09 65.5 52 57.7
Glyma.19G076700 Glycine max HOM05D000825 ORTHO05D003684 3.3e-09 65.1 51 56.9
Sp2g16410 Schrenkiella parvula HOM05D000825 ORTHO05D003684 3.3e-09 65.1 48 56.2
CANSAT64G2780 Cannabis sativa HOM05D000825 ORTHO05D003684 4.3e-09 64.7 48 64.6
Carub.0005s0381 Capsella rubella HOM05D000825 ORTHO05D003684 4.3e-09 64.7 50 52.0
Cpa.g.c36007 Carica papaya HOM05D000825 ORTHO05D003684 4.3e-09 64.7 47 59.6
Thhalv10004816m.g Eutrema salsugineum HOM05D000825 ORTHO05D003684 4.3e-09 64.7 52 46.2
Lj1g0005346 Lotus japonicus HOM05D000825 ORTHO05D003684 4.3e-09 64.7 52 55.8
MD09G1016200 Malus domestica HOM05D000825 ORTHO05D003684 4.3e-09 64.7 48 62.5
Aa31LG2G6380 Aethionema arabicum HOM05D000825 ORTHO05D003684 5.6e-09 64.3 52 50.0
BcaC06g33935 Brassica carinata HOM05D000825 ORTHO05D003684 5.6e-09 64.3 52 46.2
Carub.0005s0552 Capsella rubella HOM05D000825 ORTHO05D003684 5.6e-09 64.3 47 57.4
Ca_25816_v3 Cicer arietinum L. HOM05D000825 ORTHO05D003684 5.6e-09 64.3 48 60.4
Eucgr.J02304 Eucalyptus grandis HOM05D000825 ORTHO05D003684 5.6e-09 64.3 44 68.2
Glyma.19G084400 Glycine max HOM05D000825 ORTHO05D003684 5.6e-09 64.3 51 56.9
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 5.6e-09 64.3 52 57.7
Haze_14823 Corylus avellana HOM05D000825 ORTHO05D003684 7.3e-09 63.9 51 58.8
FAN02G3782 Fragaria x ananassa HOM05D000825 ORTHO05D003684 7.3e-09 63.9 51 58.8
Lj6C821G11 Lonicera japonica HOM05D000825 ORTHO05D003684 7.3e-09 63.9 47 57.4
MD13G1111900 Malus domestica HOM05D000825 ORTHO05D003684 7.3e-09 63.9 52 50.0
Phvul.004G056600 Phaseolus vulgaris HOM05D000825 ORTHO05D003684 7.3e-09 63.9 51 56.9
AT3G25950 Arabidopsis thaliana HOM05D000825 ORTHO05D003684 9.6e-09 63.5 52 48.1
Ciclev10016456m.g Citrus clementina HOM05D000825 ORTHO05D003684 9.6e-09 63.5 49 57.1
Glyma.16G062400 Glycine max HOM05D000825 ORTHO05D003684 9.6e-09 63.5 51 52.9
SalBow1G2383 Salvia bowleyana HOM05D000825 ORTHO05D003684 9.6e-09 63.5 52 57.7
CiPaw.04G034000 Carya illinoinensis HOM05D000825 ORTHO05D003684 1.3e-08 63.2 51 58.8
Medtr8g088170 Medicago truncatula HOM05D000825 ORTHO05D003684 1.3e-08 63.2 49 59.2
Sabra08G0136400 Salix brachista HOM05D000825 ORTHO05D003462 1.3e-08 63.2 55 52.7
TWI36G0924 Tripterygium wilfordii HOM05D000825 ORTHO05D003684 1.3e-08 63.2 45 57.8
CARHR148530 Cardamine hirsuta HOM05D000825 ORTHO05D003684 1.6e-08 62.8 47 55.3
COL.COLO4_29293 Corchorus olitorius HOM05D000825 ORTHO05D003684 1.6e-08 62.8 47 57.4
BcaB07g30171 Brassica carinata HOM05D000825 ORTHO05D003684 2.1e-08 62.4 48 54.2
CANSAT01G0340 Cannabis sativa HOM05D000825 ORTHO05D003684 2.1e-08 62.4 49 57.1
Thhalv10005332m.g Eutrema salsugineum HOM05D000825 ORTHO05D003684 2.1e-08 62.4 47 57.4
BolC7t44032H Brassica oleracea HOM05D000825 ORTHO05D003684 2.8e-08 62.0 46 50.0
Migut.H00018 Erythranthe guttata HOM05D000825 ORTHO05D003684 2.8e-08 62.0 54 53.7
MD16G1111500 Malus domestica HOM05D000825 ORTHO05D003684 2.8e-08 62.0 52 50.0
MD17G1016700 Malus domestica HOM05D000825 ORTHO05D003684 2.8e-08 62.0 48 60.4
Manes.15G157200 Manihot esculenta HOM05D000825 ORTHO05D003684 2.8e-08 62.0 47 57.4
Peaxi162Scf00080g00187 Petunia axillaris HOM05D000825 ORTHO05D003684 2.8e-08 62.0 51 54.9
PGR102G1594 Punica granatum HOM05D000825 ORTHO05D003684 3.6e-08 61.6 48 56.2
MELO3C014858.2 Cucumis melo HOM05D000825 ORTHO05D003684 4.8e-08 61.2 47 59.6
HanXRQChr15g0474691 Helianthus annuus HOM05D000825 ORTHO05D003684 4.8e-08 61.2 48 56.2
THA.LOC104825693 Tarenaya hassleriana HOM05D000825 ORTHO05D003684 4.8e-08 61.2 49 49.0
CsaV3_3G027280 Cucumis sativus L. HOM05D000825 ORTHO05D003684 6.2e-08 60.8 47 57.4
TAR374G0756 Trochodendron aralioides HOM05D000825 ORTHO05D003684 6.2e-08 60.8 44 61.4
Cc07_g00510 Coffea canephora HOM05D000825 ORTHO05D003684 8.1e-08 60.5 46 58.7
Dinv25685 Davidia involucrata HOM05D000825 ORTHO05D003684 8.1e-08 60.5 51 54.9
Os05g0302600 Oryza sativa ssp. japonica HOM05D000825 ORTHO05D003684 8.1e-08 60.5 45 62.2
Lju41C49G5 Lonicera japonica HOM05D000825 ORTHO05D003684 1.1e-07 60.1 44 61.4
Lalb_Chr24g0403391 Lupinus albus HOM05D000825 ORTHO05D003684 1.1e-07 60.1 48 54.2
BcaC03g17452 Brassica carinata HOM05D000825 ORTHO05D003684 1.4e-07 59.7 48 50.0
A02p35290 Brassica napus HOM05D000825 ORTHO05D003684 1.4e-07 59.7 48 50.0
C02p54000 Brassica napus HOM05D000825 ORTHO05D003684 1.4e-07 59.7 48 50.0
BolC2t11465H Brassica oleracea HOM05D000825 ORTHO05D003684 1.4e-07 59.7 48 50.0
BraA02t08532Z Brassica rapa HOM05D000825 ORTHO05D003684 1.4e-07 59.7 48 50.0
Prupe.1G233600 Prunus persica HOM05D000825 ORTHO05D003684 1.4e-07 59.7 48 56.2
COL.COLO4_23618 Corchorus olitorius HOM05D000825 ORTHO05D003684 1.8e-07 59.3 51 49.0
DCAR_021760 Daucus carota HOM05D000825 ORTHO05D003684 1.8e-07 59.3 47 57.4
Gohir.D09G034300 Gossypium hirsutum HOM05D000825 ORTHO05D003684 1.8e-07 59.3 47 57.4
Gorai.006G039300 Gossypium raimondii HOM05D000825 ORTHO05D003684 1.8e-07 59.3 47 57.4
PGR142G0599 Punica granatum HOM05D000825 ORTHO05D003684 1.8e-07 59.3 51 51.0
CSS0018664 Camellia sinensis var. sinensis HOM05D000825 ORTHO05D003684 2.4e-07 58.9 44 59.1
CSS0041807 Camellia sinensis var. sinensis HOM05D000825 ORTHO05D003684 2.4e-07 58.9 44 59.1
Gohir.A09G033700 Gossypium hirsutum HOM05D000825 ORTHO05D003684 2.4e-07 58.9 47 55.3
BcaC04g19048 Brassica carinata HOM05D000825 ORTHO05D003684 3.1e-07 58.5 31 87.1
MBI11_g21376_MAGBIO Magnolia biondii HOM05D000825 ORTHO05D003684 3.1e-07 58.5 44 59.1
Nn3g16547 Nelumbo nucifera HOM05D000825 ORTHO05D003684 3.1e-07 58.5 51 49.0
Nitab4.5_0000040g0460 Nicotiana tabacum HOM05D000825 ORTHO05D003684 3.1e-07 58.5 48 54.2
Nitab4.5_0008789g0010 Nicotiana tabacum HOM05D000825 ORTHO05D003684 4.0e-07 58.2 48 54.2
QL03p054799 Quercus lobata HOM05D000825 ORTHO05D003684 4.0e-07 58.2 44 54.5
Duzib147G0600 Durio zibethinus HOM05D000825 ORTHO05D003684 5.3e-07 57.8 47 53.2
Duzib187G1246 Durio zibethinus HOM05D000825 ORTHO05D003684 5.3e-07 57.8 47 53.2
Lj7A607G33 Lonicera japonica HOM05D000825 ORTHO05D003684 5.3e-07 57.8 51 54.9
THA.LOC104823970 Tarenaya hassleriana HOM05D000825 ORTHO05D003684 5.3e-07 57.8 48 54.2
Nn4g22416 Nelumbo nucifera HOM05D000825 ORTHO05D003684 6.9e-07 57.4 51 54.9
TAR622G1438 Trochodendron aralioides HOM05D000825 ORTHO05D003684 6.9e-07 57.4 42 59.5
Glyma.05G073901 Glycine max HOM05D000825 ORTHO05D003684 9.0e-07 57.0 47 59.6
Sed0016345 Sechium edule HOM05D000825 ORTHO05D003684 9.0e-07 57.0 52 48.1
Thecc.04G029000 Theobroma cacao HOM05D000825 ORTHO05D003684 9.0e-07 57.0 47 55.3
ClCG05G013260 Citrullus lanatus HOM05D000825 ORTHO05D003684 1.2e-06 56.6 47 53.2
Cpa.g.sc43.9 Carica papaya HOM05D000825 ORTHO05D003684 2.0e-06 55.8 41 51.2
CiPaw.05G115700 Carya illinoinensis HOM05D000825 ORTHO05D003684 2.0e-06 55.8 42 52.4
Sed0006825 Sechium edule HOM05D000825 ORTHO05D003684 2.0e-06 55.8 45 48.9
Thecc.02G274000 Theobroma cacao HOM05D000825 ORTHO05D003684 2.0e-06 55.8 51 47.1
Oeu050428.1 Olea europaea HOM05D000825 ORTHO05D003684 2.6e-06 55.5 51 51.0
Potri.001G335100 Populus trichocarpa HOM05D000825 ORTHO05D003684 2.6e-06 55.5 51 49.0
PGSC0003DMG400017458 Solanum tuberosum HOM05D000825 ORTHO05D003684 2.6e-06 55.5 51 49.0
Zm00001eb061940 Zea mays HOM05D000825 ORTHO05D003684 2.6e-06 55.5 46 56.5
Zm00001eb212410 Zea mays HOM05D000825 ORTHO05D003684 2.6e-06 55.5 46 56.5
Cfa017661 Carpinus fangiana HOM05D000825 ORTHO05D033059 3.4e-06 55.1 44 56.8
TWI36G0189 Tripterygium wilfordii HOM05D000825 ORTHO05D003684 3.4e-06 55.1 42 52.4
MSTRG.525 Avicennia marina HOM05D000825 ORTHO05D003684 4.4e-06 54.7 56 39.3
RcHm_v2.0_Chr4g0431211 Rosa chinensis HOM05D000825 ORTHO05D003684 4.4e-06 54.7 48 50.0
Eucgr.B03459 Eucalyptus grandis HOM05D000825 ORTHO05D003684 5.8e-06 54.3 49 46.9
Aqoxy5G03524 Aquilegia oxysepala HOM05D000825 ORTHO05D003684 7.6e-06 53.9 50 54.0
Lsat_1_v5_gn_8_150181 Lactuca sativa HOM05D000825 ORTHO05D003684 7.6e-06 53.9 48 45.8
Os12g0242800 Oryza sativa ssp. japonica HOM05D000825 ORTHO05D003684 9.9e-06 53.5 95 34.7


User provided reference genes

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