Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 0.0e+00 1999.2 1033 100.0
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 0.0e+00 1864.0 1033 94.6
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 0.0e+00 1679.8 1047 86.5
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 0.0e+00 1653.6 1061 84.9
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 0.0e+00 1596.3 1084 81.5
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 0.0e+00 1422.1 1133 72.5
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 0.0e+00 1203.3 1122 64.5
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 0.0e+00 1115.9 1182 59.1
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 0.0e+00 1106.7 1203 58.9
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 1.9e-299 1032.7 1224 55.6
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 4.9e-295 1018.1 1226 54.2
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 9.5e-291 1003.8 1144 58.7
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 7.5e-288 994.2 1169 57.4
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 3.7e-279 965.3 1150 57.6
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 4.3e-275 951.8 1147 57.0
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 2.3e-273 946.0 1146 56.7
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 8.1e-266 921.0 1157 54.1
BcaNung06336 Brassica carinata HOM05D010678 ORTHO05D006673 4.5e-192 676.0 466 78.3
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 3.4e-155 553.5 1359 36.3
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.2e-139 501.9 1152 36.8
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.1e-41 176.4 1193 26.2
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 7.3e-41 173.7 1182 25.9
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 1.2e-40 172.9 1226 26.5
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 5.8e-38 164.1 582 32.0
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 1.7e-37 162.5 1093 26.3
BcaC04g19101 Brassica carinata HOM05D010678 ORTHO05D006673 4.1e-36 157.9 101 73.3
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 5.1e-34 151.0 1073 25.7
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 5.1e-34 151.0 1311 24.9
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 2.8e-32 145.2 1092 25.2
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.1e-31 143.3 1092 25.3
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 4.0e-31 141.4 534 31.3
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 4.0e-31 141.4 554 31.4
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 5.2e-31 141.0 485 32.0
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.2e-30 139.8 458 32.8
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 7.6e-30 137.1 1231 24.7
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 2.2e-29 135.6 755 27.8
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.4e-28 132.9 1115 24.3
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 3.2e-28 131.7 1126 25.2
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 4.2e-28 131.3 491 30.5
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 5.4e-28 131.0 486 30.2
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 1.2e-27 129.8 302 37.4
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 1.2e-27 129.8 475 31.4
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 2.7e-27 128.6 637 28.9
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 1.9e-25 122.5 493 31.0
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 4.3e-25 121.3 684 27.2
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 9.6e-25 120.2 491 32.0
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 2.8e-24 118.6 491 31.8
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 6.2e-24 117.5 567 29.1
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 9.0e-23 113.6 640 27.3
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 1.5e-22 112.8 557 28.5
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 1.5e-22 112.8 377 32.4
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 1.5e-22 112.8 532 28.8
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 7.6e-22 110.5 279 34.8
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 9.9e-22 110.2 536 29.5
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 9.9e-22 110.2 1118 25.0
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 1.3e-21 109.8 518 30.1
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 3.8e-21 108.2 672 28.1
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 4.2e-20 104.8 676 28.1
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 9.3e-20 103.6 672 27.8
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 9.3e-20 103.6 657 27.5
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 3.5e-19 101.7 670 27.3
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 6.0e-19 100.9 671 27.4
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 1.7e-18 99.4 487 27.3
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 3.9e-18 98.2 483 29.6
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 5.1e-18 97.8 502 29.9
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 1.1e-17 96.7 496 30.0
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 1.1e-17 96.7 570 27.4
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.5e-17 95.5 1295 22.6
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 3.3e-17 95.1 1052 24.3
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 7.3e-17 94.0 1325 22.9
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 7.3e-17 94.0 538 29.4
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 7.3e-17 94.0 498 30.7
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.1e-16 92.4 511 27.6
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 3.6e-16 91.7 464 30.6
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 6.2e-16 90.9 1322 21.6
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 1.1e-15 90.1 1064 23.5
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 1.4e-15 89.7 676 24.6
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 3.1e-15 88.6 523 29.6
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 9.0e-15 87.0 518 28.4
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.0e-15 87.0 1040 23.4
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 2.0e-14 85.9 1004 23.9
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 5.8e-14 84.3 544 27.8
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 7.6e-14 84.0 513 29.6
BcaNung01900 Brassica carinata HOM05D010678 ORTHO05D006673 9.9e-14 83.6 51 82.4
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.9e-13 82.0 641 26.5
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 8.4e-13 80.5 944 22.6
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 1.4e-12 79.7 1282 22.7
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 4.2e-12 78.2 491 26.9
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 7.1e-12 77.4 626 27.5
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 1.2e-11 76.6 609 23.8
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 2.1e-11 75.9 398 28.6
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 7.9e-11 73.9 486 26.7
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 7.4e-09 67.4 356 30.1
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 1.3e-08 66.6 424 29.5
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 8.1e-08 63.9 510 24.9
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.1e-07 63.5 343 29.7
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 5.3e-07 61.2 359 30.4
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.2e-06 60.1 291 27.1
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.0e-06 59.3 356 29.2
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 3.4e-06 58.5 669 24.1


User provided reference genes

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