Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 7.9e-80 300.4 157 100.0
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 7.9e-80 300.4 157 100.0
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 6.7e-79 297.4 157 98.7
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 1.4e-76 289.7 157 96.8
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 9.9e-75 283.5 157 94.9
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 2.1e-72 275.8 157 92.4
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 2.4e-60 235.7 168 81.0
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 6.3e-53 211.1 168 76.2
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 6.9e-52 207.6 169 75.7
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 4.5e-51 204.9 167 75.4
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 3.6e-48 195.3 162 72.2
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 3.3e-46 188.7 163 69.3
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 7.4e-46 187.6 167 68.9
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 1.1e-44 183.7 169 68.0
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 8.8e-39 164.1 144 70.1
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 3.8e-34 148.7 172 58.1
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 1.2e-27 127.1 182 50.5
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 2.7e-27 125.9 173 51.4
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 2.2e-26 122.9 181 50.3
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 1.9e-25 119.8 169 50.3
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 4.2e-25 118.6 170 48.2
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 5.5e-25 118.2 175 49.7
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 2.1e-24 116.3 164 50.6
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 2.7e-24 115.9 169 50.3
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 2.3e-23 112.8 165 49.1
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 4.0e-23 112.1 185 43.2
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 4.0e-23 112.1 138 50.0
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 5.2e-23 111.7 131 54.2
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 5.2e-23 111.7 170 48.8
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 2.0e-22 109.8 170 46.5
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 4.4e-22 108.6 168 48.2
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 5.7e-22 108.2 169 46.2
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 9.8e-22 107.5 160 48.1
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 9.8e-22 107.5 171 45.0
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 9.8e-22 107.5 166 45.2
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 1.3e-21 107.1 173 45.7
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 1.7e-21 106.7 170 45.3
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 2.2e-21 106.3 172 47.7
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 2.8e-21 105.9 168 44.0
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 3.7e-21 105.5 160 48.1
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 6.3e-21 104.8 160 48.1
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 6.3e-21 104.8 137 46.7
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 8.3e-21 104.4 137 48.2
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 1.1e-20 104.0 166 48.8
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 1.1e-20 104.0 168 43.5
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 1.1e-20 104.0 168 41.7
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 1.1e-20 104.0 137 47.4
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 1.4e-20 103.6 169 45.0
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 1.4e-20 103.6 98 62.2
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 2.4e-20 102.8 186 41.4
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 3.1e-20 102.4 177 42.4
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 4.1e-20 102.1 102 58.8
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 4.1e-20 102.1 162 46.3
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 5.4e-20 101.7 125 51.2
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 7.0e-20 101.3 177 42.4
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 1.2e-19 100.5 179 41.9
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 1.6e-19 100.1 126 54.0
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 2.7e-19 99.4 125 51.2
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 3.5e-19 99.0 164 43.9
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 3.5e-19 99.0 122 50.8
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 4.5e-19 98.6 190 40.5
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 5.9e-19 98.2 123 49.6
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 7.7e-19 97.8 172 45.3
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 7.7e-19 97.8 116 52.6
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 1.0e-18 97.4 134 44.8
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 1.3e-18 97.1 161 43.5
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 1.7e-18 96.7 174 42.5
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 1.7e-18 96.7 107 54.2
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 1.7e-18 96.7 168 42.9
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 2.9e-18 95.9 175 44.6
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 2.9e-18 95.9 164 42.7
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 5.0e-18 95.1 158 44.9
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 8.6e-18 94.4 181 42.0
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 1.1e-17 94.0 181 39.2
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 1.5e-17 93.6 170 45.3
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 1.5e-17 93.6 179 41.9
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 4.2e-17 92.0 150 44.7
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 4.2e-17 92.0 119 45.4
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 7.2e-17 91.3 167 43.1
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 9.5e-17 90.9 108 50.9
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 2.1e-16 89.7 184 41.3
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 4.7e-16 88.6 107 50.5
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 1.0e-15 87.4 160 41.2
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 2.3e-15 86.3 160 39.4
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 3.0e-15 85.9 116 46.6
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 4.0e-15 85.5 113 50.4
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 1.2e-14 84.0 159 42.1
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 3.4e-14 82.4 74 60.8
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 4.4e-14 82.0 101 52.5
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 5.7e-14 81.6 105 52.4
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 7.5e-14 81.3 153 44.4
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 1.3e-13 80.5 160 40.0
CANSAT80G2361 Cannabis sativa HOM05D007065 ORTHO05D008960 2.2e-13 79.7 151 39.1
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 2.8e-13 79.3 165 41.2
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 6.3e-13 78.2 180 36.1
FAN03G0341 Fragaria x ananassa HOM05D007065 ORTHO05D008960 8.3e-13 77.8 146 41.8
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 1.1e-12 77.4 82 58.5
CDE04G3117 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 2.4e-12 76.3 173 40.5
CDE07G0125 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 4.1e-12 75.5 168 39.3
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 1.2e-11 73.9 102 50.0
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 1.6e-11 73.6 105 47.6
Mapoly0014s0118 Marchantia polymorpha HOM05D007065 ORTHO05D008960 2.7e-11 72.8 152 38.8
AagrBONN_evm.TU.Sc2ySwM_228.825 Anthoceros agrestis HOM05D007065 ORTHO05D008960 3.5e-11 72.4 148 37.2
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 4.5e-11 72.0 162 41.4
Gorai.013G014700 Gossypium raimondii HOM05D007065 ORTHO05D008960 1.3e-10 70.5 120 44.2
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 2.3e-10 69.7 147 39.5
Gohir.A13G012500 Gossypium hirsutum HOM05D007065 ORTHO05D008960 8.6e-10 67.8 120 43.3
Haze_03101 Corylus avellana HOM05D007065 ORTHO05D008960 2.5e-09 66.2 135 39.3
CBR_g4751 Chara braunii HOM05D007065 ORTHO05D008960 9.5e-09 64.3 73 47.9
Hma1.2p1_0579F.1_g182650 Hydrangea macrophylla HOM05D007065 ORTHO05D008960 4.7e-08 62.0 147 39.5
Zm00001eb141670 Zea mays HOM05D007065 ORTHO05D008960 8.0e-08 61.2 65 56.9
Os01g0939400 Oryza sativa ssp. japonica HOM05D007065 ORTHO05D008960 1.8e-07 60.1 169 36.1
CSS0014876 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D000473 1.2e-06 57.4 73 52.1
Pp3c19_1440 Physcomitrium patens HOM05D007065 ORTHO05D008960 3.4e-06 55.8 71 45.1


User provided reference genes

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