Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 1.2e-239 832.8 441 100.0
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 4.7e-239 830.9 441 99.8
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 5.2e-230 800.8 441 94.1
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 2.6e-229 798.5 441 93.2
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 1.3e-228 796.2 439 95.7
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 1.3e-228 796.2 441 93.4
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 1.3e-228 796.2 441 93.4
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 2.0e-226 788.9 441 95.0
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 2.0e-226 788.9 441 95.0
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.3e-225 786.2 443 94.4
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 1.5e-224 782.7 441 91.6
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 4.7e-223 777.7 441 90.7
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 8.0e-223 776.9 441 90.7
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 5.8e-221 770.8 441 90.2
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 5.8e-221 770.8 441 90.2
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.5e-216 756.1 443 88.9
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 2.5e-216 755.4 441 89.3
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 6.2e-215 750.7 441 89.3
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 3.7e-212 741.5 441 88.2
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 5.8e-205 717.6 441 85.7
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 4.6e-202 708.0 445 84.0
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.8e-198 696.0 390 95.9
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 1.7e-196 689.5 494 74.9
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 8.4e-196 687.2 441 80.5
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 2.4e-195 685.6 442 81.0
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 4.2e-195 684.9 442 80.5
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.1e-194 682.6 438 81.5
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 2.7e-194 682.2 443 81.7
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 3.5e-194 681.8 443 81.3
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 4.6e-194 681.4 441 80.0
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 6.0e-194 681.0 438 81.5
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 1.0e-193 680.2 438 81.3
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 2.3e-193 679.1 441 80.0
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 3.9e-193 678.3 442 79.6
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 6.6e-193 677.6 442 80.1
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 8.7e-193 677.2 442 80.5
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.9e-192 676.0 444 80.2
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.9e-192 676.0 444 80.4
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 1.9e-192 676.0 440 80.2
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 4.3e-192 674.9 442 79.2
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 5.6e-192 674.5 443 80.4
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 9.6e-192 673.7 439 79.0
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 9.6e-192 673.7 439 79.0
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 6.2e-191 671.0 443 79.2
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.1e-190 670.2 441 78.5
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.4e-190 669.1 447 79.9
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 3.1e-190 668.7 445 79.8
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 4.0e-190 668.3 444 79.5
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 6.9e-190 667.5 443 79.2
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 6.9e-190 667.5 445 79.6
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 9.0e-190 667.2 442 79.4
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.2e-189 666.8 444 79.1
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.5e-189 666.4 403 83.1
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.5e-189 666.4 448 78.1
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 2.0e-189 666.0 443 79.2
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.0e-189 666.0 441 78.7
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 3.4e-189 665.2 443 78.1
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 3.4e-189 665.2 403 82.9
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 4.5e-189 664.8 440 79.5
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 4.5e-189 664.8 441 79.6
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 7.6e-189 664.1 446 78.5
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 7.6e-189 664.1 439 79.5
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.2e-188 662.5 437 79.4
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.9e-188 662.1 446 78.3
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.9e-188 661.4 442 79.0
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 6.4e-188 661.0 442 79.0
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.1e-187 660.2 445 77.5
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.4e-187 659.8 442 77.1
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 2.4e-187 659.1 441 78.7
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 3.2e-187 658.7 439 78.8
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 3.2e-187 658.7 443 77.7
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.2e-187 658.3 439 78.8
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 4.2e-187 658.3 445 77.1
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 5.4e-187 657.9 439 78.8
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 7.1e-187 657.5 441 77.6
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 7.1e-187 657.5 443 78.6
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 3.5e-186 655.2 444 78.8
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 4.6e-186 654.8 442 77.6
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 4.6e-186 654.8 404 82.2
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 4.6e-186 654.8 441 78.0
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 6.0e-186 654.4 442 78.7
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 6.0e-186 654.4 443 78.1
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 7.9e-186 654.1 441 76.6
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 7.9e-186 654.1 411 80.8
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 1.3e-185 653.3 441 78.5
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 6.7e-185 651.0 441 77.8
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 8.7e-185 650.6 441 78.2
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 1.1e-184 650.2 443 77.7
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.5e-184 649.8 440 76.4
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 1.9e-184 649.4 417 80.1
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 2.5e-184 649.0 447 76.1
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.5e-184 649.0 439 77.0
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 4.3e-184 648.3 397 83.4
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 3.7e-183 645.2 401 81.3
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 3.7e-183 645.2 439 75.6
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 4.8e-183 644.8 398 83.7
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 6.2e-183 644.4 442 76.2
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 6.2e-183 644.4 417 80.1
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 6.2e-183 644.4 417 80.1
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 6.2e-183 644.4 442 77.1
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 1.8e-182 642.9 443 76.5
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 9.0e-182 640.6 443 74.7
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 4.5e-181 638.3 443 74.9
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 2.2e-180 636.0 448 74.3
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 1.1e-179 633.6 444 74.5
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 5.1e-177 624.8 381 82.4
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 8.7e-177 624.0 442 75.6
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 8.7e-177 624.0 378 83.3
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 3.7e-175 618.6 416 78.4
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 3.7e-175 618.6 382 81.4
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 4.8e-175 618.2 384 81.0
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 6.2e-175 617.8 423 76.6
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.8e-174 616.3 481 69.4
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.8e-174 616.3 401 78.8
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.9e-171 606.3 393 77.9
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 5.5e-171 604.7 386 79.0
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 9.3e-171 604.0 396 76.0
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.1e-170 602.8 387 80.9
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 5.7e-168 594.7 400 74.8
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.1e-166 590.5 443 72.9
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 3.2e-163 578.9 380 80.3
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.3e-156 557.0 444 69.4
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 5.5e-155 551.6 367 79.8
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 2.5e-147 526.2 408 66.4
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 1.6e-146 523.5 401 63.8
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 6.1e-146 521.5 366 69.7
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.4e-145 520.4 336 80.4
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.3e-143 513.8 303 86.8
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 2.2e-140 503.1 363 66.9
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.5e-139 500.4 384 65.6
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 9.4e-139 497.7 413 63.0
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 9.4e-139 497.7 359 70.8
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 4.7e-138 495.4 417 62.4
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 8.0e-138 494.6 377 66.3
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.0e-137 494.2 377 66.3
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.3e-137 493.0 362 66.0
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 5.7e-136 488.4 393 61.8
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.3e-135 487.3 362 64.9
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 4.8e-135 485.3 364 66.8
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 3.2e-131 472.6 380 60.3
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 6.3e-127 458.4 317 75.1
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 2.4e-126 456.4 401 57.9
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 1.5e-123 447.2 359 61.6
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 7.3e-115 418.3 365 60.8
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 3.1e-97 359.8 369 54.5
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 2.8e-90 336.7 302 58.9
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 5.8e-80 302.4 216 69.9
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 5.6e-75 285.8 193 81.9
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.6e-66 257.7 319 44.2
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.0e-63 248.4 145 90.3
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.3e-58 231.5 198 60.6
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.3e-55 221.5 125 83.2
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 1.2e-53 214.9 154 68.8
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 7.2e-38 162.5 153 62.1
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 9.4e-38 162.2 162 53.1
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 6.1e-37 159.5 119 67.2
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 7.4e-35 152.5 81 93.8
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 2.1e-29 134.4 117 58.1
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 6.7e-28 129.4 80 77.5
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.7e-26 123.6 80 71.2
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 2.8e-18 97.4 77 54.5
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 6.3e-18 96.3 108 50.9
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 4.2e-14 83.6 94 50.0
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 1.0e-07 62.4 35 82.9


User provided reference genes

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