Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 2062.3 1114 100.0
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 2046.2 1114 97.1
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 2045.0 1114 98.6
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 2031.9 1115 96.9
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 2030.4 1115 97.0
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1968.7 1119 92.1
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1916.7 1124 88.8
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1912.9 1124 88.4
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1905.6 1124 88.0
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1896.7 1124 87.3
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1896.3 1128 88.2
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1895.9 1124 87.6
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1895.2 1128 88.1
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1889.0 1128 88.0
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1885.9 1128 87.9
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1874.0 1124 88.2
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1838.2 1137 84.2
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1756.9 1128 80.6
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1730.3 1141 81.6
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1608.6 1134 72.7
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1594.7 1140 72.1
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1593.9 1132 73.3
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1593.2 1139 71.8
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1591.6 1141 72.5
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1590.5 1129 71.4
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1588.2 1127 71.9
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1579.7 1131 70.8
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1577.8 1131 71.3
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1576.6 1141 71.0
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1574.3 1133 70.4
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1572.0 1129 70.0
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1571.2 1130 70.3
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1570.8 1140 70.4
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1567.4 1134 70.3
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1561.2 1127 70.4
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1561.2 1127 70.2
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1557.7 1129 71.8
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1555.4 1127 69.7
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1555.4 1127 69.2
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1554.7 1127 70.1
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1549.3 1129 68.9
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1540.0 1133 69.0
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1538.1 1181 67.5
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1533.9 1136 68.2
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1532.3 1144 67.9
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1532.3 1127 68.2
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1532.3 1123 69.9
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1530.0 1129 68.6
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1526.5 1129 68.8
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1524.6 1124 68.1
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1523.1 1129 69.0
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1520.4 1135 68.5
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1520.0 1136 68.8
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1518.4 1122 67.7
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1515.0 1122 67.6
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1514.2 1133 68.0
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1513.8 1138 69.2
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1511.1 1122 67.9
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1509.2 1135 66.5
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1508.0 1138 67.8
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1494.9 1135 67.9
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1487.6 1137 66.8
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1486.1 1105 68.8
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1482.6 1115 66.4
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1480.7 1127 66.6
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1479.5 1123 68.4
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1478.4 1129 66.7
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1478.4 1126 66.2
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1477.6 1071 69.5
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1477.2 1143 66.8
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1476.8 1137 67.3
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1476.5 1124 66.8
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1474.5 1137 66.5
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1472.2 1069 68.6
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1470.7 1140 65.7
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1466.8 1125 67.0
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1463.0 1123 66.6
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1454.1 1139 65.0
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1450.6 1124 64.9
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1447.6 1124 65.0
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1445.3 1030 70.4
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1444.9 1122 65.7
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1442.9 1147 66.3
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1442.9 1147 66.3
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1441.8 1012 73.3
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1439.9 1072 67.9
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1438.7 1122 67.2
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1437.2 1119 65.8
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1434.9 1125 64.8
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1434.1 1068 67.0
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1424.8 1098 67.8
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1421.0 1070 67.3
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1405.2 1069 68.8
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1393.3 1071 66.2
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1391.7 1035 67.5
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1335.9 925 72.4
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1329.7 1121 63.1
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1313.9 1073 63.4
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1307.0 1042 64.5
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1300.8 1070 60.8
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1299.3 925 69.6
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1258.4 1065 59.5
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1250.0 1068 58.5
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1213.0 896 68.5
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1167.1 887 66.0
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1140.9 822 70.6
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1084.7 879 62.3
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 4.4e-310 1068.1 1069 51.6
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 6.2e-304 1047.7 1070 50.8
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 8.9e-303 1043.9 779 67.7
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 3.5e-291 1005.4 1066 49.2
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 2.1e-283 979.5 1068 48.5
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 1.5e-273 946.8 673 70.1
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 3.3e-265 919.1 759 62.1
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 2.1e-227 793.5 879 51.1
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 8.8e-226 788.1 599 66.6
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 1.0e-210 738.0 613 61.0
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 5.2e-210 735.7 1082 40.0
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 9.0e-154 548.9 366 73.8
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 4.3e-132 476.9 421 60.3
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 3.0e-125 454.1 356 63.2
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 1.8e-106 391.7 356 56.2
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 1.4e-98 365.5 1182 27.7
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 1.0e-88 332.8 246 66.3
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 4.7e-86 323.9 1142 27.0
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.1e-82 312.8 344 54.9
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 8.6e-72 276.6 365 44.9
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.6e-70 272.3 315 50.8
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 1.0e-64 253.1 333 45.6
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 4.3e-55 221.1 320 45.0
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 6.9e-29 134.0 106 68.9
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 1.9e-26 125.9 70 78.6
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 5.5e-26 124.4 108 68.5
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 9.3e-26 123.6 68 79.4
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.2e-25 123.2 666 22.2
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 6.1e-25 120.9 86 74.4
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 1.0e-24 120.2 150 46.7
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 4.3e-23 114.8 86 70.9
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 1.7e-06 59.7 79 41.8


User provided reference genes

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