Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 1.2e-52 209.5 103 100.0
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 8.0e-49 196.8 101 96.0
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 8.3e-46 186.8 101 91.1
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 2.4e-45 185.3 101 89.1
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 2.4e-45 185.3 101 90.1
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 3.2e-45 184.9 101 89.1
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 4.1e-45 184.5 101 91.1
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 7.0e-45 183.7 101 88.1
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 6.0e-44 180.6 95 92.6
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 1.0e-43 179.9 101 89.1
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 1.3e-43 179.5 103 89.3
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 1.5e-42 176.0 99 86.9
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 2.5e-42 175.3 97 89.7
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 2.5e-42 175.3 97 89.7
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 5.8e-39 164.1 100 79.0
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 5.4e-37 157.5 100 79.0
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 1.2e-36 156.4 100 77.0
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 2.1e-36 155.6 100 75.0
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 6.0e-36 154.1 100 74.0
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 6.0e-36 154.1 100 74.0
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 3.9e-35 151.4 99 74.7
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 5.1e-35 151.0 100 76.0
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 5.1e-35 151.0 100 75.0
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 5.1e-35 151.0 100 75.0
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 6.6e-35 150.6 100 74.0
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 6.6e-35 150.6 99 73.7
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 1.5e-34 149.4 100 74.0
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 1.5e-34 149.4 100 72.0
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 1.5e-34 149.4 99 74.7
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.5e-34 149.4 100 73.0
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 1.5e-34 149.4 94 78.7
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.9e-34 149.1 95 76.8
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 1.9e-34 149.1 100 74.0
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 1.9e-34 149.1 100 74.0
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 2.5e-34 148.7 99 74.7
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 3.3e-34 148.3 100 73.0
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.3e-34 147.9 95 76.8
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.3e-34 147.9 95 76.8
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 4.3e-34 147.9 94 77.7
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 5.6e-34 147.5 95 75.8
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 5.6e-34 147.5 100 76.0
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 7.3e-34 147.1 101 73.3
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 9.5e-34 146.7 95 77.9
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 1.6e-33 146.0 100 71.0
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 1.6e-33 146.0 95 74.7
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 2.1e-33 145.6 95 73.7
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.1e-33 145.6 100 71.0
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 2.1e-33 145.6 101 72.3
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 2.1e-33 145.6 100 71.0
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 2.8e-33 145.2 100 70.0
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 2.8e-33 145.2 100 70.0
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 2.8e-33 145.2 100 72.0
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 3.6e-33 144.8 95 73.7
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 3.6e-33 144.8 101 71.3
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 4.7e-33 144.4 95 74.7
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 4.7e-33 144.4 95 75.8
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 4.7e-33 144.4 100 71.0
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 4.7e-33 144.4 94 74.5
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 6.2e-33 144.1 99 70.7
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 6.2e-33 144.1 99 70.7
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 8.1e-33 143.7 95 73.7
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 8.1e-33 143.7 95 73.7
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 8.1e-33 143.7 99 71.7
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 1.1e-32 143.3 96 71.9
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 1.1e-32 143.3 100 70.0
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 1.1e-32 143.3 90 76.7
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 1.1e-32 143.3 101 72.3
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.4e-32 142.9 96 72.9
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.4e-32 142.9 99 69.7
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 1.4e-32 142.9 100 70.0
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.3e-32 142.1 95 74.7
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 2.3e-32 142.1 95 75.8
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 2.3e-32 142.1 96 71.9
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 2.3e-32 142.1 96 71.9
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 3.1e-32 141.7 98 70.4
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 3.1e-32 141.7 94 73.4
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 4.0e-32 141.4 95 74.7
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 4.0e-32 141.4 100 70.0
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 5.2e-32 141.0 93 73.1
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 5.2e-32 141.0 100 70.0
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 5.2e-32 141.0 93 76.3
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 5.2e-32 141.0 96 70.8
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 6.8e-32 140.6 95 73.7
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 1.5e-31 139.4 93 72.0
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 3.4e-31 138.3 96 72.9
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 5.8e-31 137.5 91 74.7
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 5.8e-31 137.5 99 66.7
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 7.5e-31 137.1 93 71.0
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 9.9e-31 136.7 94 72.3
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 1.3e-30 136.3 93 69.9
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.7e-30 136.0 95 72.6
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 2.2e-30 135.6 93 69.9
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 2.9e-30 135.2 98 69.4
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 2.9e-30 135.2 98 69.4
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 3.7e-30 134.8 95 71.6
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 4.9e-30 134.4 94 72.3
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 6.4e-30 134.0 93 69.9
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 2.4e-29 132.1 95 68.4
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 2.4e-29 132.1 95 68.4
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 3.2e-29 131.7 100 67.0
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 5.4e-29 131.0 93 67.7
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 7.1e-29 130.6 104 66.3
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 7.1e-29 130.6 90 71.1
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 9.2e-29 130.2 95 69.5
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 1.6e-28 129.4 126 57.1
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 3.5e-28 128.3 91 68.1
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.7e-27 125.9 76 81.6
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 8.1e-25 117.1 94 60.6
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 1.1e-24 116.7 91 67.0
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 2.4e-24 115.5 91 64.8
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.4e-23 111.7 96 60.4
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 5.8e-23 110.9 91 59.3
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.8e-22 108.2 96 58.3
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 3.2e-21 105.1 96 56.2
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 4.2e-21 104.8 69 75.4
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 9.2e-21 103.6 82 64.6
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 4.6e-20 101.3 95 52.6
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 6.0e-20 100.9 82 63.4
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 6.0e-20 100.9 69 72.5
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 7.8e-20 100.5 69 72.5
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 8.7e-19 97.1 89 53.9
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 7.6e-15 84.0 95 44.2
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.2e-14 82.4 94 51.1
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 2.9e-14 82.0 90 53.3
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 4.3e-10 68.2 72 51.4
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 8.1e-09 63.9 37 75.7
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 6.9e-08 60.8 85 42.4


User provided reference genes

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