Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 3.3e-144 515.0 258 100.0
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 3.3e-144 515.0 258 100.0
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 2.4e-142 508.8 258 98.4
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 1.5e-141 506.1 258 99.2
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 2.2e-140 502.3 258 98.1
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 8.8e-129 463.8 258 89.9
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 1.4e-126 456.4 258 88.8
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 1.8e-126 456.1 258 88.0
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 7.0e-126 454.1 258 88.0
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 9.1e-126 453.8 258 88.0
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 7.2e-123 444.1 258 87.6
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 7.2e-123 444.1 258 87.6
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 2.1e-122 442.6 284 80.3
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 3.7e-119 431.8 256 82.8
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 8.3e-119 430.6 258 86.0
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 3.3e-115 418.7 237 87.8
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 2.9e-111 405.6 260 80.8
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 3.3e-107 392.1 258 74.4
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 8.9e-97 357.5 190 91.1
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 4.6e-85 318.5 262 58.8
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 8.6e-84 314.3 262 59.2
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 5.6e-83 311.6 263 58.2
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 9.6e-83 310.8 261 57.5
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 1.8e-81 306.6 247 59.9
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 2.4e-81 306.2 246 60.2
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 8.9e-81 304.3 241 60.6
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 2.6e-80 302.8 263 57.0
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 4.4e-80 302.0 262 55.7
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 2.9e-79 299.3 248 58.5
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 1.1e-78 297.4 267 56.9
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 2.4e-78 296.2 253 56.5
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 1.2e-77 293.9 263 55.9
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 1.6e-77 293.5 148 96.6
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 1.6e-77 293.5 261 55.9
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 3.9e-76 288.9 251 55.4
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 6.6e-76 288.1 257 55.6
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 8.7e-76 287.7 263 56.3
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 1.9e-75 286.6 262 54.2
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 3.6e-74 282.3 245 56.7
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 4.8e-74 282.0 217 59.4
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 5.3e-73 278.5 264 52.7
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.6e-72 276.2 262 54.2
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 3.4e-72 275.8 263 54.0
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 3.4e-72 275.8 292 50.0
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 5.8e-72 275.0 258 54.3
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 7.6e-72 274.6 248 55.6
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 7.6e-72 274.6 245 56.7
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 9.9e-72 274.2 247 54.7
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 2.2e-71 273.1 261 52.1
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 2.2e-71 273.1 244 54.1
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 2.2e-71 273.1 264 53.8
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 2.2e-71 273.1 260 53.1
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 2.9e-71 272.7 263 51.7
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 4.9e-71 271.9 251 54.6
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 8.4e-71 271.2 245 55.1
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 1.1e-70 270.8 248 54.4
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 1.1e-70 270.8 272 49.6
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 3.2e-70 269.2 251 53.0
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 7.1e-70 268.1 240 55.0
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 7.1e-70 268.1 245 55.1
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 9.3e-70 267.7 263 53.2
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 9.3e-70 267.7 227 58.6
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 9.3e-70 267.7 245 54.7
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 1.2e-69 267.3 264 51.1
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 2.7e-69 266.2 262 51.9
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 2.7e-69 266.2 227 57.3
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 6.0e-69 265.0 247 54.3
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 7.9e-69 264.6 247 54.3
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 1.0e-68 264.2 272 48.5
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 1.7e-68 263.5 261 51.3
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 3.0e-68 262.7 231 56.7
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 3.0e-68 262.7 245 50.6
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 3.9e-68 262.3 245 54.3
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 6.6e-68 261.5 249 54.2
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 6.6e-68 261.5 249 50.2
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 6.6e-68 261.5 251 51.8
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 1.5e-67 260.4 251 52.2
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 1.5e-67 260.4 251 52.2
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 3.3e-67 259.2 248 51.6
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 1.3e-66 257.3 253 51.4
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 1.6e-66 256.9 243 51.4
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 2.1e-66 256.5 231 53.2
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 2.8e-66 256.1 227 57.3
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 3.6e-66 255.8 251 50.6
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 4.9e-63 245.4 243 50.6
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 1.4e-62 243.8 243 49.8
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 5.5e-62 241.9 224 53.1
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 5.5e-62 241.9 236 50.0
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 1.2e-61 240.7 260 46.2
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 2.1e-61 240.0 236 49.6
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 3.9e-60 235.7 243 51.4
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 1.5e-59 233.8 237 49.8
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 1.5e-59 233.8 211 54.0
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 1.4e-57 227.3 243 47.7
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 6.9e-57 224.9 224 54.0
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 4.2e-54 215.7 215 50.2
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 5.5e-54 215.3 246 46.7
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 5.7e-51 205.3 241 47.3
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 5.3e-49 198.7 327 36.4
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 2.6e-48 196.4 165 55.2
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 1.4e-46 190.7 170 56.5
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 4.6e-37 159.1 132 59.8
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 4.6e-37 159.1 250 40.0
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 1.7e-31 140.6 136 50.7
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 5.0e-31 139.0 110 64.5
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.4e-30 137.5 116 56.0
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.4e-30 137.5 116 56.0
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 1.1e-22 111.3 206 33.0
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 1.5e-22 110.9 154 42.2
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 1.1e-19 101.3 128 43.8
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 3.3e-19 99.8 95 49.5
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.8e-18 95.9 92 55.4
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 8.2e-18 95.1 198 29.8
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 2.3e-12 77.0 171 30.4
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 4.0e-12 76.3 90 45.6
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 5.7e-11 72.4 62 48.4
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 9.1e-09 65.1 76 43.4


User provided reference genes

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