Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 2.3e-145 518.8 256 100.0
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 6.5e-116 421.0 258 84.5
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 8.5e-116 420.6 255 84.3
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.9e-115 419.5 258 84.5
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 4.2e-115 418.3 258 84.1
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 4.2e-115 418.3 258 84.1
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 9.4e-115 417.2 258 83.7
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.0e-113 413.7 255 82.4
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 8.2e-111 404.1 255 81.2
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.4e-110 402.5 255 80.0
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 5.3e-110 401.4 255 79.6
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 9.1e-110 400.6 257 79.4
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 9.4e-107 390.6 276 74.3
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 4.0e-105 385.2 238 83.6
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 6.7e-105 384.4 243 83.1
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 8.8e-105 384.0 255 76.9
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 2.2e-103 379.4 249 80.3
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 9.1e-102 374.0 254 76.0
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.0e-100 370.5 259 74.5
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.0e-100 370.5 259 74.5
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 2.9e-100 369.0 257 73.5
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 2.9e-100 369.0 249 75.1
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 8.5e-100 367.5 250 74.4
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.5e-99 366.7 249 74.7
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 3.2e-99 365.5 250 74.4
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 4.2e-99 365.2 251 75.3
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 4.2e-99 365.2 249 74.7
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 4.2e-99 365.2 256 74.2
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 5.5e-99 364.8 253 73.9
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 5.5e-99 364.8 253 73.9
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 5.5e-99 364.8 253 73.9
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 7.2e-99 364.4 254 74.4
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 7.2e-99 364.4 258 74.8
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 7.2e-99 364.4 245 75.9
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 9.4e-99 364.0 247 75.7
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 9.4e-99 364.0 250 74.4
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 9.4e-99 364.0 247 74.5
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.2e-98 363.6 250 74.4
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.6e-98 363.2 250 74.4
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 1.6e-98 363.2 251 74.5
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 2.1e-98 362.8 248 74.6
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 3.6e-98 362.1 256 73.4
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 4.7e-98 361.7 260 71.2
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 6.1e-98 361.3 246 74.8
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 8.0e-98 360.9 253 73.5
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.4e-97 360.1 249 73.9
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.4e-97 360.1 248 73.8
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.4e-97 360.1 250 74.4
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.4e-97 360.1 253 72.7
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 1.8e-97 359.8 256 73.0
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.8e-97 359.8 251 74.1
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.8e-97 359.8 250 73.2
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.3e-97 359.4 256 73.8
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 3.0e-97 359.0 248 74.6
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 4.0e-97 358.6 250 73.6
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 5.2e-97 358.2 249 73.9
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 5.2e-97 358.2 253 72.7
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 6.8e-97 357.8 247 74.5
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 8.8e-97 357.5 255 70.6
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 1.2e-96 357.1 248 72.6
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.5e-96 356.7 249 73.9
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.0e-96 356.3 247 74.5
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 2.0e-96 356.3 249 72.7
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 2.6e-96 355.9 249 73.1
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 3.4e-96 355.5 251 72.5
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 3.4e-96 355.5 251 72.5
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 4.4e-96 355.1 247 74.5
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 4.4e-96 355.1 247 73.3
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 4.4e-96 355.1 247 72.5
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.7e-96 354.8 250 72.8
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.7e-96 354.8 250 73.2
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 5.7e-96 354.8 247 74.9
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.8e-96 354.0 250 72.8
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 9.8e-96 354.0 256 69.5
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 9.8e-96 354.0 245 73.9
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.3e-95 353.6 247 74.5
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 1.3e-95 353.6 249 73.9
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.7e-95 353.2 250 72.0
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 3.7e-95 352.1 256 69.5
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 4.8e-95 351.7 247 72.1
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 6.3e-95 351.3 254 70.1
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 8.3e-95 350.9 249 72.7
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 8.3e-95 350.9 249 72.7
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.4e-94 350.1 248 72.6
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.4e-94 350.1 253 70.0
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 3.1e-94 349.0 248 72.6
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 4.1e-94 348.6 250 70.8
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 5.4e-94 348.2 245 73.1
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.6e-93 346.7 249 71.5
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.7e-93 345.9 245 71.8
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 2.7e-93 345.9 247 71.7
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 3.5e-93 345.5 245 71.8
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.5e-93 345.5 270 68.1
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 5.9e-93 344.7 247 71.3
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 7.7e-93 344.4 250 72.4
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.0e-92 344.0 246 72.0
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.9e-92 342.4 252 70.6
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 8.6e-92 340.9 251 70.1
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.1e-91 340.5 252 70.2
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.5e-91 340.1 258 69.4
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.5e-91 340.1 254 70.1
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 3.3e-91 339.0 249 68.7
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.2e-90 337.0 232 75.0
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.2e-90 337.0 247 68.8
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 1.2e-90 337.0 254 68.1
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 8.0e-90 334.3 240 73.3
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 2.3e-89 332.8 259 66.8
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 2.3e-89 332.8 285 62.5
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 2.0e-88 329.7 254 68.1
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 3.4e-88 328.9 255 64.7
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 7.5e-88 327.8 270 64.4
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 2.8e-87 325.9 299 61.5
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.8e-86 323.2 251 68.5
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 3.1e-86 322.4 249 64.7
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 4.1e-86 322.0 251 64.1
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 5.4e-86 321.6 282 60.6
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 9.2e-86 320.9 250 64.4
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 7.8e-85 317.8 207 80.2
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.0e-84 317.4 230 72.2
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 5.0e-84 315.1 240 70.0
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 5.0e-84 315.1 232 72.4
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 5.0e-84 315.1 249 65.5
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 6.6e-84 314.7 257 66.5
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.3e-83 312.4 272 62.9
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 4.3e-83 312.0 246 62.2
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.1e-75 287.3 207 70.0
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.6e-74 283.5 241 59.3
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 3.1e-73 279.3 214 67.3
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.7e-71 273.5 210 68.1
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.4e-70 270.4 193 71.0
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 8.6e-68 261.2 240 58.3
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 7.3e-67 258.1 189 67.7
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.8e-58 229.6 160 71.2
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.8e-57 226.9 160 70.0
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.3e-47 194.1 144 70.1
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 3.0e-44 183.0 266 39.8
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 8.7e-36 154.8 243 38.3
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 1.1e-35 154.5 87 87.4
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.4e-33 147.5 84 81.0
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 6.9e-33 145.2 244 36.9
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.6e-29 134.0 192 45.3
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 8.7e-28 128.3 64 92.2
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 4.9e-23 112.5 93 68.8
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 2.5e-19 100.1 84 59.5
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.3e-18 97.8 95 47.4
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 3.7e-18 96.3 71 64.8
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.4e-17 94.4 84 57.1
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 7.2e-14 82.0 50 82.0
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.5e-11 74.3 41 78.0
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 3.1e-09 66.6 71 54.9
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 2.9e-07 60.1 69 53.6


User provided reference genes

Program Settings