Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 7.2e-101 370.5 182 100.0
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 7.2e-101 370.5 182 100.0
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 2.3e-99 365.5 182 98.9
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 6.7e-99 364.0 182 98.4
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 2.5e-98 362.1 182 97.8
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 2.2e-97 359.0 182 97.3
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 2.8e-97 358.6 182 97.8
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 4.8e-97 357.8 182 97.3
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.4e-96 356.3 182 97.3
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.8e-96 355.9 182 96.7
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 2.4e-96 355.5 182 96.7
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 1.0e-94 350.1 182 95.1
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 2.9e-94 348.6 182 95.1
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 5.0e-94 347.8 182 94.5
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 5.0e-94 347.8 182 94.5
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 6.5e-94 347.4 182 93.4
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 1.4e-93 346.3 182 94.5
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 2.1e-92 342.4 175 96.6
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 2.1e-92 342.4 169 100.0
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 7.9e-92 340.5 182 91.2
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 4.1e-88 328.2 169 97.0
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 5.2e-83 311.2 182 83.0
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 6.7e-83 310.8 182 82.4
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 1.1e-82 310.1 182 83.0
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.1e-82 310.1 177 84.2
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 2.6e-82 308.9 177 84.2
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.6e-82 308.9 177 83.6
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 2.6e-82 308.9 177 83.6
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 2.6e-82 308.9 176 85.2
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 4.4e-82 308.1 177 84.7
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 4.4e-82 308.1 177 84.7
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 7.5e-82 307.4 177 84.2
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 7.5e-82 307.4 178 82.6
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.3e-81 306.6 177 84.2
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 2.2e-81 305.8 182 80.8
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 2.8e-81 305.4 177 83.6
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 6.3e-81 304.3 182 81.3
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 6.3e-81 304.3 177 82.5
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.4e-80 303.1 177 83.1
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 1.4e-80 303.1 177 81.9
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 7.0e-80 300.8 177 81.4
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 9.1e-80 300.4 178 80.3
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 2.7e-79 298.9 177 81.9
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 2.7e-79 298.9 182 79.1
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 3.5e-79 298.5 182 80.2
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 4.5e-79 298.1 178 82.6
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 4.5e-79 298.1 182 79.7
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 4.5e-79 298.1 177 83.1
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 5.9e-79 297.7 178 82.6
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 1.0e-78 297.0 179 79.9
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.7e-78 296.2 182 80.2
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 1.7e-78 296.2 170 84.1
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.2e-78 295.8 182 79.1
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 2.2e-78 295.8 177 81.9
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 2.9e-78 295.4 179 81.0
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 2.9e-78 295.4 182 80.2
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.9e-78 295.4 179 81.0
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 3.8e-78 295.0 182 80.8
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 5.0e-78 294.7 179 80.4
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 6.5e-78 294.3 177 81.9
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 6.5e-78 294.3 174 81.6
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 8.5e-78 293.9 177 80.8
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 8.5e-78 293.9 177 79.7
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 8.5e-78 293.9 178 80.9
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.1e-77 293.5 177 80.8
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.1e-77 293.5 177 79.7
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 1.1e-77 293.5 183 78.7
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 2.5e-77 292.4 181 81.2
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.2e-77 292.0 177 79.1
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 3.2e-77 292.0 183 80.9
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 3.2e-77 292.0 177 79.7
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 4.2e-77 291.6 182 77.5
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 5.5e-77 291.2 167 83.8
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 7.2e-77 290.8 178 80.3
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 1.2e-76 290.0 178 82.6
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.6e-76 289.7 177 79.7
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 2.1e-76 289.3 178 78.7
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 2.7e-76 288.9 177 79.7
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 3.6e-76 288.5 177 80.2
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 3.6e-76 288.5 181 80.1
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 6.1e-76 287.7 181 79.0
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 6.1e-76 287.7 176 79.5
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 8.0e-76 287.3 177 78.5
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 8.0e-76 287.3 179 78.2
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 8.0e-76 287.3 178 82.0
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.0e-75 287.0 177 79.1
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 1.0e-75 287.0 177 79.1
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 4.0e-75 285.0 169 82.2
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.2e-75 284.6 171 78.9
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 5.2e-75 284.6 182 76.9
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 5.2e-75 284.6 181 79.0
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 6.8e-75 284.3 177 78.5
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 8.8e-75 283.9 178 80.9
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 1.5e-74 283.1 178 77.0
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 2.0e-74 282.7 176 76.7
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 2.6e-74 282.3 171 78.4
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 3.4e-74 282.0 177 76.8
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 9.8e-74 280.4 178 79.8
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.3e-73 280.0 182 75.3
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 3.7e-73 278.5 199 71.9
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 4.8e-73 278.1 179 78.2
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 4.8e-73 278.1 180 76.7
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 4.8e-73 278.1 169 80.5
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.8e-73 278.1 177 76.3
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.8e-73 278.1 177 76.3
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 4.8e-73 278.1 169 79.9
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 6.3e-73 277.7 182 74.7
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 6.3e-73 277.7 170 79.4
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 6.3e-73 277.7 170 79.4
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 1.4e-72 276.6 169 77.5
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 1.8e-72 276.2 201 70.1
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 4.5e-71 271.6 177 75.7
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.7e-71 270.8 171 77.8
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 7.7e-71 270.8 177 76.3
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 6.5e-70 267.7 184 73.9
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 6.5e-70 267.7 184 73.9
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 8.5e-70 267.3 169 77.5
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 4.2e-69 265.0 169 78.1
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.1e-68 262.7 162 79.0
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 4.7e-68 261.5 178 71.9
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 6.1e-68 261.2 180 72.8
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.8e-67 259.6 182 73.6
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 7.5e-66 254.2 182 70.9
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 1.3e-65 253.4 169 71.0
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 1.1e-64 250.4 183 68.9
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 1.6e-63 246.5 177 69.5
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 3.8e-62 241.9 254 53.9
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 5.0e-62 241.5 151 78.1
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 5.0e-62 241.5 166 69.3
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 8.9e-59 230.7 172 65.1
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 2.6e-58 229.2 167 65.9
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.3e-57 226.9 167 65.3
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 8.3e-57 224.2 149 74.5
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 4.1e-56 221.9 136 84.6
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.3e-54 216.9 177 66.1
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 3.2e-48 195.7 171 55.0
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 8.3e-41 171.0 170 54.1
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 1.9e-37 159.8 101 81.2
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 3.8e-33 145.6 117 66.7
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 4.9e-33 145.2 171 42.7
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.2e-32 142.5 103 71.8
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 3.9e-30 135.6 79 79.7
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 6.6e-30 134.8 176 40.9
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 3.5e-23 112.5 76 76.3
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 3.5e-23 112.5 76 76.3
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.0e-22 110.9 64 78.1
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.3e-21 105.9 53 92.5
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 7.3e-21 104.8 165 34.5
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 9.6e-21 104.4 57 80.7
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 1.3e-20 104.0 51 94.1
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 1.2e-18 97.4 105 48.6
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 2.0e-18 96.7 62 75.8
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 7.1e-16 88.2 55 70.9
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 1.2e-15 87.4 165 35.8
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 5.6e-13 78.6 41 90.2
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 5.6e-13 78.6 41 90.2
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 1.3e-12 77.4 90 45.6
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 4.0e-11 72.4 37 89.2
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 9.0e-11 71.2 88 46.6
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 9.9e-10 67.8 43 79.1
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 3.8e-09 65.9 38 81.6
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 6.4e-09 65.1 52 65.4
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 8.4e-09 64.7 46 67.4
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 1.4e-08 63.9 42 73.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 4.2e-08 62.4 50 64.0
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 1.6e-07 60.5 35 74.3
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 1.0e-06 57.8 42 61.9


User provided reference genes

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