Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 1.1e-57 226.5 116 100.0
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 1.1e-57 226.5 116 100.0
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 1.1e-51 206.5 115 93.9
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 3.3e-51 204.9 113 95.6
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 4.3e-51 204.5 117 94.9
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 2.2e-47 192.2 113 90.3
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 3.8e-47 191.4 109 91.7
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 3.2e-46 188.3 108 89.8
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 5.5e-46 187.6 108 93.5
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 5.5e-46 187.6 108 93.5
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 5.5e-46 187.6 108 93.5
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 3.6e-45 184.9 109 91.7
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 4.6e-45 184.5 109 86.2
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 1.0e-44 183.3 108 88.0
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 1.5e-43 179.5 106 91.5
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 4.3e-43 177.9 107 90.7
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 7.4e-43 177.2 108 90.7
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 6.3e-42 174.1 110 89.1
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 3.4e-40 168.3 110 80.9
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 1.5e-32 142.9 112 69.6
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 2.6e-32 142.1 109 71.6
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 7.0e-25 117.5 107 56.1
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 3.5e-24 115.2 112 54.5
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 3.5e-24 115.2 98 60.2
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 4.5e-24 114.8 99 58.6
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 5.9e-24 114.4 95 56.8
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 7.7e-24 114.0 110 54.5
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 1.3e-23 113.2 114 50.0
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 2.2e-23 112.5 109 56.0
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 2.9e-23 112.1 111 52.3
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 3.8e-23 111.7 104 55.8
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 3.8e-23 111.7 113 50.4
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 3.8e-23 111.7 109 54.1
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 3.8e-23 111.7 109 54.1
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 6.5e-23 110.9 108 50.9
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 6.5e-23 110.9 108 50.9
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 8.5e-23 110.5 96 56.2
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 8.5e-23 110.5 96 56.2
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 8.5e-23 110.5 117 49.6
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 8.5e-23 110.5 110 53.6
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 1.5e-22 109.8 103 51.5
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 1.5e-22 109.8 108 50.0
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 1.9e-22 109.4 110 53.6
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 2.5e-22 109.0 110 52.7
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 2.5e-22 109.0 79 62.0
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 3.2e-22 108.6 105 53.3
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 3.2e-22 108.6 109 55.0
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 4.2e-22 108.2 110 50.0
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 4.2e-22 108.2 87 60.9
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 5.5e-22 107.8 100 55.0
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 5.5e-22 107.8 110 53.6
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 9.4e-22 107.1 99 54.5
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 9.4e-22 107.1 88 58.0
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 1.2e-21 106.7 112 52.7
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 1.2e-21 106.7 86 61.6
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 1.6e-21 106.3 81 64.2
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 1.6e-21 106.3 81 64.2
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 2.1e-21 105.9 98 55.1
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 3.6e-21 105.1 104 51.9
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 4.7e-21 104.8 92 55.4
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 4.7e-21 104.8 98 55.1
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 6.1e-21 104.4 97 55.7
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 6.1e-21 104.4 103 52.4
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 6.1e-21 104.4 112 50.0
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 6.1e-21 104.4 94 58.5
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 6.1e-21 104.4 110 53.6
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 8.0e-21 104.0 110 50.0
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 8.0e-21 104.0 110 50.0
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 1.0e-20 103.6 103 52.4
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 1.4e-20 103.2 108 49.1
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 1.4e-20 103.2 108 50.0
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 1.8e-20 102.8 101 52.5
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 1.8e-20 102.8 105 50.5
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 1.8e-20 102.8 101 56.4
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 1.8e-20 102.8 105 50.5
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 2.3e-20 102.4 105 53.3
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 2.3e-20 102.4 91 59.3
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 2.3e-20 102.4 84 60.7
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 2.3e-20 102.4 81 60.5
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 3.0e-20 102.1 73 61.6
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 4.0e-20 101.7 79 59.5
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 4.0e-20 101.7 79 59.5
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 4.0e-20 101.7 107 49.5
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 5.2e-20 101.3 109 47.7
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 6.8e-20 100.9 83 60.2
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 8.8e-20 100.5 108 49.1
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 8.8e-20 100.5 86 60.5
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 8.8e-20 100.5 110 49.1
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 1.5e-19 99.8 106 47.2
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 1.5e-19 99.8 73 61.6
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 2.0e-19 99.4 114 46.5
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 2.0e-19 99.4 86 54.7
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 2.0e-19 99.4 88 52.3
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 2.6e-19 99.0 114 50.9
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 3.4e-19 98.6 105 49.5
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 4.4e-19 98.2 104 50.0
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 4.4e-19 98.2 83 56.6
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 7.5e-19 97.4 114 46.5
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 7.5e-19 97.4 106 48.1
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 9.7e-19 97.1 104 49.0
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 9.7e-19 97.1 110 47.3
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 1.3e-18 96.7 116 46.6
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.3e-18 96.7 83 56.6
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 1.7e-18 96.3 92 53.3
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.7e-18 96.3 83 56.6
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 2.2e-18 95.9 73 58.9
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 2.8e-18 95.5 84 53.6
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 2.8e-18 95.5 83 55.4
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 6.3e-18 94.4 114 46.5
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 6.3e-18 94.4 85 52.9
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 8.3e-18 94.0 74 59.5
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 8.3e-18 94.0 72 56.9
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 1.1e-17 93.6 101 49.5
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.8e-17 92.8 83 54.2
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 5.3e-17 91.3 98 49.0
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 7.0e-17 90.9 95 48.4
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 1.2e-16 90.1 62 62.9
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 1.6e-16 89.7 72 54.2
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 2.7e-16 89.0 63 63.5
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 4.5e-16 88.2 95 50.5
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 7.2e-14 80.9 72 50.0
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 3.6e-13 78.6 90 47.8
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 6.1e-13 77.8 63 52.4
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 1.3e-10 70.1 89 39.3
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 5.4e-09 64.7 90 35.6
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 1.2e-08 63.5 67 43.3
Oeu062074.1 Olea europaea HOM05D013196 ORTHO05D010523 3.8e-07 58.5 57 59.6


User provided reference genes

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