Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 1.3e-32 142.5 72 100.0
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 1.3e-32 142.5 72 100.0
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 1.3e-32 142.5 72 100.0
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 1.5e-30 135.6 71 94.4
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 3.4e-30 134.4 72 93.1
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 6.5e-29 130.2 72 88.9
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 7.1e-28 126.7 72 88.9
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 1.6e-27 125.6 72 87.5
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 3.0e-26 121.3 72 83.3
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 5.1e-26 120.6 72 87.5
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 1.3e-24 115.9 61 91.8
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 1.1e-23 112.8 72 77.8
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 3.4e-22 107.8 72 73.6
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 1.7e-21 105.5 55 89.1
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 1.9e-20 102.1 69 71.0
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 9.3e-20 99.8 54 85.2
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 2.7e-19 98.2 63 76.2
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 2.7e-19 98.2 53 81.1
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 3.5e-19 97.8 63 69.8
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 3.5e-19 97.8 63 69.8
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 3.5e-19 97.8 63 76.2
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 4.6e-19 97.4 69 68.1
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 4.6e-19 97.4 51 82.4
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 6.1e-19 97.1 55 80.0
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 7.9e-19 96.7 53 83.0
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 1.3e-18 95.9 61 70.5
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 1.3e-18 95.9 61 75.4
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 1.3e-18 95.9 50 82.0
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 1.3e-18 95.9 63 74.6
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 1.8e-18 95.5 55 78.2
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 2.3e-18 95.1 54 81.5
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 3.0e-18 94.7 60 73.3
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 3.0e-18 94.7 51 82.4
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 3.9e-18 94.4 59 72.9
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 3.9e-18 94.4 55 76.4
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 3.9e-18 94.4 58 74.1
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 5.1e-18 94.0 59 72.9
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 6.7e-18 93.6 69 68.1
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 8.7e-18 93.2 52 80.8
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 8.7e-18 93.2 54 77.8
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 1.1e-17 92.8 59 76.3
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 1.1e-17 92.8 51 84.3
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 1.5e-17 92.4 58 70.7
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 1.5e-17 92.4 50 80.0
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 1.5e-17 92.4 51 76.5
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 1.9e-17 92.0 51 80.4
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 1.9e-17 92.0 60 75.0
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 1.9e-17 92.0 58 74.1
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 1.9e-17 92.0 55 74.5
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 1.9e-17 92.0 54 75.9
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 3.3e-17 91.3 51 78.4
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 3.3e-17 91.3 51 80.4
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 3.3e-17 91.3 54 74.1
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 4.3e-17 90.9 60 68.3
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 5.7e-17 90.5 53 77.4
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 5.7e-17 90.5 60 73.3
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 5.7e-17 90.5 51 80.4
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 9.7e-17 89.7 53 75.5
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 9.7e-17 89.7 66 66.7
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 1.3e-16 89.4 59 66.1
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 1.3e-16 89.4 57 71.9
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 1.6e-16 89.0 54 74.1
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 2.2e-16 88.6 51 76.5
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 6.3e-16 87.0 50 76.0
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 6.3e-16 87.0 60 65.0
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 6.3e-16 87.0 60 65.0
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 1.8e-15 85.5 51 76.5
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 2.4e-15 85.1 54 72.2
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 3.1e-15 84.7 41 90.2
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 9.0e-15 83.2 46 76.1
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 9.0e-15 83.2 41 87.8
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.5e-14 82.4 41 85.4
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 1.5e-14 82.4 41 85.4
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 1.5e-14 82.4 58 63.8
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 2.6e-14 81.6 54 75.9
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 2.6e-14 81.6 49 71.4
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 5.9e-14 80.5 42 83.3
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 1.0e-13 79.7 48 70.8
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 1.3e-13 79.3 41 82.9
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.7e-13 79.0 41 82.9
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 3.8e-13 77.8 44 75.0
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 8.5e-13 76.6 42 76.2
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 1.9e-12 75.5 41 78.0
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 1.9e-12 75.5 56 66.1
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 5.5e-12 73.9 39 82.1
Zm00001eb093420 Zea mays HOM05D007733 ORTHO05D009786 5.5e-12 73.9 45 66.7
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 2.1e-11 72.0 40 72.5
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 2.1e-11 72.0 40 72.5
Mapoly0009s0018 Marchantia polymorpha HOM05D007733 ORTHO05D009786 9.7e-09 63.2 52 57.7
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 1.7e-08 62.4 34 79.4
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 6.3e-08 60.5 42 64.3
Gohir.A11G247151 Gossypium hirsutum HOM05D007733 ORTHO05D009786 2.4e-07 58.5 36 77.8
CBR_g21252 Chara braunii HOM05D007733 ORTHO05D009786 6.9e-07 57.0 65 46.2


User provided reference genes

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