Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p03390 Brassica napus HOM05D007944 ORTHO05D010014 1.8e-23 111.7 55 100.0
BolC2t06301H Brassica oleracea HOM05D007944 ORTHO05D010014 1.8e-23 111.7 55 100.0
BraA02t04940Z Brassica rapa HOM05D007944 ORTHO05D010014 1.8e-23 111.7 55 100.0
BcaB05g21585 Brassica carinata HOM05D007944 ORTHO05D010014 2.4e-23 111.3 55 98.2
BcaC03g13205 Brassica carinata HOM05D007944 ORTHO05D010014 5.3e-23 110.2 55 98.2
C09p68880 Brassica napus HOM05D007944 ORTHO05D010014 1.3e-21 105.5 55 90.9
BcaB01g05682 Brassica carinata HOM05D007944 ORTHO05D010014 2.9e-21 104.4 55 92.7
A03p03550 Brassica napus HOM05D007944 ORTHO05D010014 3.8e-21 104.0 55 90.9
BraA03t09705Z Brassica rapa HOM05D007944 ORTHO05D010014 3.8e-21 104.0 55 90.9
BolC9t59634H Brassica oleracea HOM05D007944 ORTHO05D010014 6.5e-21 103.2 55 89.1
BcaB01g05641 Brassica carinata HOM05D007944 ORTHO05D010014 8.4e-21 102.8 55 89.1
BolC3t12937H Brassica oleracea HOM05D007944 ORTHO05D010014 8.4e-21 102.8 55 89.1
BraA10t44908Z Brassica rapa HOM05D007944 ORTHO05D010014 4.2e-20 100.5 52 90.4
BcaB08g37295 Brassica carinata HOM05D007944 ORTHO05D010014 7.1e-20 99.8 55 87.3
C03p04000 Brassica napus HOM05D007944 ORTHO05D010014 7.1e-20 99.8 55 87.3
Sp6g34910 Schrenkiella parvula HOM05D000813 ORTHO05D004282 1.2e-19 99.0 53 86.8
Thhalv10015226m.g Eutrema salsugineum HOM05D007944 ORTHO05D010014 7.9e-19 96.3 55 80.0
CARHR205140 Cardamine hirsuta HOM05D007944 ORTHO05D010014 1.8e-18 95.1 56 82.1
Carub.0006s0693 Capsella rubella HOM05D007944 ORTHO05D010014 2.3e-18 94.7 55 78.2
AL6G18390 Arabidopsis lyrata HOM05D007944 ORTHO05D010014 3.0e-18 94.4 55 76.4
A10p28590 Brassica napus HOM05D007944 ORTHO05D010014 9.6e-17 89.4 52 84.6
AT5G08040 Arabidopsis thaliana HOM05D007944 ORTHO05D010014 1.3e-16 89.0 55 70.9
Potri.015G058500 Populus trichocarpa HOM05D007944 ORTHO05D010014 4.8e-16 87.0 55 69.1
COL.COLO4_24344 Corchorus olitorius HOM05D007944 ORTHO05D010014 1.8e-15 85.1 55 69.1
CSS0002657 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 4.0e-15 84.0 55 69.1
CSS0037671 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 4.0e-15 84.0 55 69.1
Duzib084G0160 Durio zibethinus HOM05D007944 ORTHO05D010014 4.0e-15 84.0 55 67.3
THA.LOC104818349 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 5.3e-15 83.6 55 69.1
Thecc.03G102900 Theobroma cacao HOM05D007944 ORTHO05D010014 5.3e-15 83.6 55 67.3
THA.LOC109116171 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 6.9e-15 83.2 55 67.3
Hma1.2p1_0060F.1_g033020 Hydrangea macrophylla HOM05D007944 ORTHO05D010014 5.8e-14 80.1 55 63.6
Gohir.A03G070400 Gossypium hirsutum HOM05D007944 ORTHO05D010014 1.0e-13 79.3 55 63.6
PGR083G1417 Punica granatum HOM05D007944 ORTHO05D010014 1.3e-13 79.0 55 65.5
Gohir.D03G096800 Gossypium hirsutum HOM05D007944 ORTHO05D010014 1.7e-13 78.6 55 63.6
Gorai.003G101600 Gossypium raimondii HOM05D007944 ORTHO05D010014 1.7e-13 78.6 55 63.6
Manes.06G083900 Manihot esculenta HOM05D007944 ORTHO05D010014 1.7e-13 78.6 55 61.8
Ciclev10023235m.g Citrus clementina HOM05D007944 ORTHO05D010014 2.2e-13 78.2 55 61.8
GSVIVG01008105001 Vitis vinifera HOM05D007944 ORTHO05D010014 2.9e-13 77.8 55 58.2
HanXRQChr04g0110041 Helianthus annuus HOM05D007944 ORTHO05D010014 6.5e-13 76.6 55 61.8
PGSC0003DMG400024536 Solanum tuberosum HOM05D007944 ORTHO05D010014 1.1e-12 75.9 55 61.8
Duzib205G1703 Durio zibethinus HOM05D007944 ORTHO05D010014 1.4e-12 75.5 55 63.6
Nn3g17462 Nelumbo nucifera HOM05D007944 ORTHO05D010014 4.2e-12 73.9 55 65.5
TWI60G0934 Tripterygium wilfordii HOM05D007944 ORTHO05D010014 4.2e-12 73.9 55 60.0
CiPaw.11G054400 Carya illinoinensis HOM05D007944 ORTHO05D010014 5.5e-12 73.6 55 60.0
Aa31LG3G18500 Aethionema arabicum HOM05D000813 ORTHO05D004282 7.1e-12 73.2 54 61.1
Sc12g0007040 Simmondsia chinensis HOM05D007944 ORTHO05D010014 7.1e-12 73.2 53 58.5
Migut.D01638 Erythranthe guttata HOM05D007944 ORTHO05D010014 2.1e-11 71.6 55 58.2
Lsat_1_v5_gn_1_14420 Lactuca sativa HOM05D007944 ORTHO05D010014 2.7e-11 71.2 55 58.2
CAN.G1228.17 Capsicum annuum HOM05D007944 ORTHO05D010014 7.9e-11 69.7 55 56.4
Lalb_Chr13g0302811 Lupinus albus HOM05D007944 ORTHO05D010014 7.9e-11 69.7 55 58.2
HanXRQChr02g0044781 Helianthus annuus HOM05D007944 ORTHO05D010014 3.9e-10 67.4 47 59.6
CANSAT56G0188 Cannabis sativa HOM05D007944 ORTHO05D010014 8.7e-10 66.2 55 50.9
Lj4g0027267 Lotus japonicus HOM05D007944 ORTHO05D010014 1.1e-09 65.9 55 54.5
Prupe.5G206000 Prunus persica HOM05D007944 ORTHO05D010014 1.1e-09 65.9 50 60.0
RcHm_v2.0_Chr7g0183191 Rosa chinensis HOM05D007944 ORTHO05D010014 1.1e-09 65.9 55 54.5
TAR629G2843 Trochodendron aralioides HOM05D007944 ORTHO05D010014 1.1e-09 65.9 49 59.2
Phvul.003G184100 Phaseolus vulgaris HOM05D007944 ORTHO05D010014 1.9e-09 65.1 55 50.9
Lalb_Chr12g0197241 Lupinus albus HOM05D007944 ORTHO05D010014 2.5e-09 64.7 55 54.5
Glyma.05G020300 Glycine max HOM05D007944 ORTHO05D010014 3.3e-09 64.3 55 54.5
Glyma.17G079100 Glycine max HOM05D007944 ORTHO05D010014 3.3e-09 64.3 55 54.5
MD06G1225800 Malus domestica HOM05D007944 ORTHO05D010014 4.3e-09 63.9 50 56.0
MD14G1212700 Malus domestica HOM05D007944 ORTHO05D010014 4.3e-09 63.9 50 56.0
ClCG04G011750 Citrullus lanatus HOM05D007944 ORTHO05D010014 7.4e-09 63.2 49 55.1
MELO3C002035.2 Cucumis melo HOM05D007944 ORTHO05D010014 7.4e-09 63.2 49 55.1
Os12g0575200 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 1.3e-08 62.4 55 49.1
Ca_21766_v3 Cicer arietinum L. HOM05D007944 ORTHO05D010014 1.6e-08 62.0 49 59.2
Medtr4g109610 Medicago truncatula HOM05D007944 ORTHO05D010014 1.6e-08 62.0 55 50.9
FvH4_5g13750 Fragaria vesca HOM05D007944 ORTHO05D010014 8.2e-08 59.7 50 52.0
Sed0006151 Sechium edule HOM05D007944 ORTHO05D010014 8.2e-08 59.7 49 51.0
Psat4g047680 Pisum sativum HOM05D007944 ORTHO05D010014 1.4e-07 58.9 55 49.1
Aqoxy3G03680 Aquilegia oxysepala HOM05D007944 ORTHO05D010014 5.3e-07 57.0 55 50.9
Pp3c12_23850 Physcomitrium patens HOM05D007944 ORTHO05D010014 5.3e-07 57.0 48 54.2
Pp3c3_35330 Physcomitrium patens HOM05D007944 ORTHO05D010014 5.3e-07 57.0 49 51.0
CsaV3_1G006040 Cucumis sativus L. HOM05D007944 ORTHO05D010014 1.5e-06 55.5 38 63.2


User provided reference genes

Program Settings