Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 8.2e-146 520.4 266 100.0
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 8.2e-146 520.4 266 100.0
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 4.4e-139 498.0 270 94.8
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 7.2e-134 480.7 312 83.0
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 1.1e-131 473.4 270 90.0
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 1.3e-119 433.3 269 82.5
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 1.0e-116 423.7 271 80.1
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-112 410.2 270 77.0
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 3.5e-112 408.7 270 76.7
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 3.8e-111 405.2 269 77.7
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 3.6e-109 398.7 270 75.9
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 1.3e-106 390.2 270 72.2
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 7.8e-104 380.9 252 77.8
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 1.9e-102 376.3 271 70.8
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 1.7e-98 363.2 253 76.3
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 1.4e-92 343.6 248 72.2
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 2.2e-90 336.3 269 62.8
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 8.3e-82 307.8 268 59.3
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 1.9e-81 306.6 271 57.6
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 6.0e-80 301.6 267 56.2
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 7.8e-80 301.2 268 56.0
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 1.0e-79 300.8 267 56.9
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.7e-79 300.1 268 55.6
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 5.1e-79 298.5 268 55.2
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 1.5e-78 297.0 267 56.6
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 1.9e-78 296.6 253 57.3
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 1.6e-77 293.5 267 56.2
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 4.7e-77 292.0 267 56.6
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 4.7e-77 292.0 268 54.1
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 1.8e-76 290.0 271 54.6
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 1.5e-75 287.0 268 54.1
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.0e-75 286.6 269 55.8
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 2.6e-75 286.2 267 54.3
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 4.4e-75 285.4 255 58.4
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 9.9e-75 284.3 269 54.6
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.7e-74 283.5 267 54.7
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 2.2e-74 283.1 267 53.2
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 2.9e-74 282.7 267 53.9
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 6.4e-74 281.6 269 53.5
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 6.4e-74 281.6 267 55.4
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 4.1e-73 278.9 269 53.9
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 3.5e-72 275.8 266 55.3
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 6.0e-72 275.0 269 54.3
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 1.0e-71 274.2 269 52.0
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 6.6e-71 271.6 265 54.3
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 8.6e-71 271.2 265 53.6
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 2.5e-70 269.6 265 54.0
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 2.8e-69 266.2 272 50.4
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 2.8e-69 266.2 270 51.9
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 1.1e-68 264.2 270 51.9
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 1.4e-68 263.8 269 53.2
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 4.0e-68 262.3 267 50.6
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.2e-68 261.9 265 54.0
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 9.0e-68 261.2 245 56.7
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.2e-67 260.8 270 50.0
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 1.2e-67 260.8 269 53.5
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 2.0e-67 260.0 261 52.5
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 7.6e-67 258.1 274 52.2
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 9.9e-67 257.7 269 48.7
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 1.3e-66 257.3 267 52.1
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 1.3e-66 257.3 272 50.4
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 1.7e-66 256.9 271 50.2
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 4.9e-66 255.4 268 48.9
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 2.4e-65 253.1 266 51.1
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.4e-65 253.1 265 52.1
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 2.4e-65 253.1 269 52.0
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 5.4e-65 251.9 267 50.6
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 7.1e-65 251.5 269 48.7
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.2e-64 250.8 270 49.3
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 1.6e-64 250.4 269 46.1
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 7.8e-64 248.1 269 52.0
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 1.0e-63 247.7 272 47.1
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 1.3e-63 247.3 269 52.0
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 2.3e-63 246.5 269 50.2
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 1.9e-62 243.4 252 52.4
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 3.3e-62 242.7 272 46.3
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 1.1e-60 237.7 268 48.9
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 4.0e-60 235.7 240 52.1
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 6.9e-60 235.0 268 46.6
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 1.2e-59 234.2 263 48.3
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 1.5e-59 233.8 255 51.0
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 1.3e-58 230.7 271 44.6
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 8.4e-58 228.0 259 49.4
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 1.1e-57 227.6 270 46.3
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.1e-57 227.6 240 51.7
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 9.3e-57 224.6 335 41.8
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 3.5e-56 222.6 272 43.0
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 1.0e-55 221.1 270 45.2
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.3e-55 220.7 231 52.4
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 8.7e-55 218.0 264 43.9
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.9e-54 216.9 216 52.8
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 9.6e-54 214.5 258 44.6
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 6.2e-53 211.8 245 50.2
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 8.1e-53 211.5 279 44.4
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 4.5e-51 205.7 264 46.2
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 9.9e-51 204.5 270 42.2
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 2.4e-49 199.9 272 45.2
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 7.9e-48 194.9 267 44.9
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 7.9e-48 194.9 253 43.5
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 1.3e-47 194.1 218 48.6
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 1.3e-47 194.1 265 39.6
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 3.7e-45 186.0 163 68.1
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.1e-44 183.0 188 54.8
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 6.9e-44 181.8 163 67.5
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 2.9e-42 176.4 163 65.0
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 8.4e-42 174.9 185 49.7
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 2.1e-40 170.2 239 42.7
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.7e-40 169.9 174 55.7
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.7e-40 169.9 174 55.7
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 4.3e-38 162.5 168 52.4
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 2.8e-37 159.8 266 39.5
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 6.3e-37 158.7 220 41.4
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-35 154.5 140 62.9
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 2.2e-34 150.2 175 49.7
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.8e-34 149.4 137 62.8
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 6.5e-34 148.7 173 46.8
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 4.3e-30 136.0 174 43.7
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 2.8e-29 133.3 255 33.3
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.5e-27 125.9 188 43.6
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.9e-27 125.6 188 43.1
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 2.6e-22 110.2 145 42.1
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 7.4e-22 108.6 67 85.1
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 7.4e-22 108.6 67 85.1
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 7.4e-22 108.6 135 44.4
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 6.9e-20 102.1 65 73.8
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 6.9e-20 102.1 202 34.7
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 4.5e-19 99.4 167 38.3
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 2.9e-18 96.7 85 54.1
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.2e-17 92.0 148 45.3
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 7.2e-17 92.0 220 32.3
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 3.9e-15 86.3 86 47.7
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 3.3e-14 83.2 123 39.8
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 8.2e-13 78.6 132 43.9
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.2e-10 70.5 65 55.4
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 8.5e-10 68.6 75 46.7
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 2.7e-08 63.5 177 28.2
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 2.7e-08 63.5 181 27.6
VMungo1127G0437 Vigna mungo HOM05D005448 ORTHO05D006405 2.7e-08 63.5 154 27.9
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 6.7e-07 58.9 62 53.2
BolC2t09494H Brassica oleracea HOM05D005448 ORTHO05D006405 8.8e-07 58.5 35 80.0
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 9.7e-06 55.1 64 48.4


User provided reference genes

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