Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 2.3e-117 425.6 226 100.0
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 1.4e-106 389.8 226 93.4
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 2.4e-106 389.0 234 90.2
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 3.2e-106 388.7 226 91.6
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 7.8e-105 384.0 205 97.1
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 7.8e-105 384.0 205 97.1
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 7.8e-105 384.0 205 97.1
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 1.5e-103 379.8 226 89.8
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 1.5e-103 379.8 226 89.8
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 4.3e-103 378.3 226 89.4
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 7.3e-103 377.5 226 89.4
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 9.5e-103 377.1 226 89.4
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 1.6e-102 376.3 227 90.7
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 8.9e-93 344.0 236 82.6
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 3.7e-91 338.6 237 80.6
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 4.9e-91 338.2 240 80.8
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 2.4e-90 335.9 236 80.9
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 4.3e-87 325.1 247 75.7
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 8.1e-78 294.3 224 71.9
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 7.9e-65 251.1 204 67.6
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.3e-64 250.4 220 60.9
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 3.9e-64 248.8 226 60.2
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 5.1e-64 248.4 232 61.2
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 6.7e-64 248.1 220 62.3
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 5.6e-63 245.0 231 61.5
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 5.6e-63 245.0 232 60.8
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 1.3e-62 243.8 197 69.5
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 1.6e-62 243.4 222 62.6
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 1.6e-62 243.4 226 62.4
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 2.8e-62 242.7 232 59.9
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 2.8e-62 242.7 207 63.3
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 3.7e-62 242.3 178 73.0
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 8.1e-62 241.1 204 64.2
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 1.4e-61 240.4 205 64.4
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.4e-61 240.4 225 59.6
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 1.8e-61 240.0 173 73.4
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 1.8e-61 240.0 190 71.6
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 2.4e-61 239.6 183 67.8
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 3.1e-61 239.2 228 60.5
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 6.9e-61 238.0 225 60.0
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 6.9e-61 238.0 227 59.9
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 1.2e-60 237.3 213 61.5
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 1.2e-60 237.3 218 59.6
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 1.5e-60 236.9 227 59.5
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 2.0e-60 236.5 228 57.5
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 2.6e-60 236.1 208 62.0
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 2.6e-60 236.1 175 72.0
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 3.4e-60 235.7 228 57.5
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 3.4e-60 235.7 202 62.9
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 5.8e-60 235.0 227 61.2
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 5.8e-60 235.0 216 60.2
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 5.8e-60 235.0 208 63.5
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 5.8e-60 235.0 230 57.0
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 7.6e-60 234.6 213 62.0
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 2.9e-59 232.6 218 61.0
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 2.9e-59 232.6 206 60.7
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 4.9e-59 231.9 168 73.2
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 4.9e-59 231.9 211 60.7
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 8.4e-59 231.1 246 56.1
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 1.1e-58 230.7 180 73.3
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 1.4e-58 230.3 249 55.8
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 1.9e-58 229.9 215 61.4
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 1.9e-58 229.9 228 59.6
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 1.9e-58 229.9 240 57.9
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 3.2e-58 229.2 192 63.5
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 3.2e-58 229.2 211 58.8
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 4.2e-58 228.8 180 68.3
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 4.2e-58 228.8 180 68.3
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 4.2e-58 228.8 193 65.3
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 9.3e-58 227.6 222 57.7
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 9.3e-58 227.6 225 58.2
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 9.3e-58 227.6 193 66.3
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 1.2e-57 227.3 211 61.1
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 1.6e-57 226.9 224 59.8
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 1.6e-57 226.9 152 74.3
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 3.5e-57 225.7 150 78.0
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 3.5e-57 225.7 215 59.1
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 3.5e-57 225.7 193 65.3
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 1.0e-56 224.2 189 63.5
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 2.3e-56 223.0 184 61.4
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 3.9e-56 222.2 192 60.4
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 5.1e-56 221.9 211 57.8
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 5.1e-56 221.9 181 65.7
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 8.7e-56 221.1 215 58.6
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 1.1e-55 220.7 218 58.7
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 1.1e-55 220.7 172 72.7
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 1.9e-55 219.9 159 71.1
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 1.3e-54 217.2 135 80.7
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 1.3e-54 217.2 219 56.6
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 6.3e-54 214.9 224 54.9
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 1.1e-53 214.2 238 55.9
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 1.1e-53 214.2 230 57.4
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 1.4e-53 213.8 205 59.0
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 2.0e-52 209.9 182 64.3
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 1.7e-51 206.8 228 52.2
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 2.9e-51 206.1 197 58.4
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 6.5e-51 204.9 221 58.4
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 1.4e-50 203.8 166 68.1
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 3.2e-50 202.6 227 50.7
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 4.2e-50 202.2 233 54.5
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 5.5e-50 201.8 218 56.0
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 4.6e-49 198.7 132 82.6
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 2.3e-48 196.4 158 67.1
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 3.0e-48 196.1 202 54.0
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 3.9e-48 195.7 171 60.8
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 8.7e-48 194.5 104 92.3
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 4.1e-45 185.7 127 71.7
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 6.9e-45 184.9 181 58.0
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 6.9e-45 184.9 138 72.5
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 7.7e-44 181.4 117 77.8
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 1.0e-43 181.0 144 68.1
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 2.9e-43 179.5 164 60.4
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 3.8e-43 179.1 214 48.6
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 2.5e-42 176.4 170 58.8
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 4.2e-42 175.6 172 61.0
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 9.4e-42 174.5 192 54.2
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 1.4e-40 170.6 208 51.0
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 2.5e-39 166.4 185 50.8
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 7.4e-39 164.9 181 51.4
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 9.7e-39 164.5 244 45.5
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 1.8e-37 160.2 110 72.7
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 1.6e-28 130.6 110 62.7
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 6.5e-27 125.2 164 48.2
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 2.7e-25 119.8 161 47.8
C07p55210 Brassica napus HOM05D005878 ORTHO05D033170 1.7e-22 110.5 120 63.3
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 4.5e-20 102.4 99 59.6
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 9.4e-18 94.7 116 44.8
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 2.6e-15 86.7 105 49.5
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 4.4e-15 85.9 83 59.0
BolC7t45992H Brassica oleracea HOM05D005878 ORTHO05D033170 2.0e-12 77.0 59 86.4
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 1.7e-11 73.9 206 32.5
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 4.4e-07 59.3 72 50.0


User provided reference genes

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