Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 1.7e-163 579.3 310 100.0
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 1.7e-163 579.3 310 100.0
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 5.2e-144 514.6 261 99.6
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 1.7e-142 509.6 260 98.8
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 4.9e-142 508.1 261 98.1
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 4.9e-142 508.1 260 98.5
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 4.9e-142 508.1 260 98.5
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 2.4e-141 505.8 265 96.6
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 5.4e-141 504.6 259 98.5
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 4.7e-137 491.5 266 93.6
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 9.9e-135 483.8 261 92.7
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.7e-134 483.0 261 93.1
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 1.1e-133 480.3 261 93.1
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 1.9e-133 479.6 261 93.1
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 4.2e-133 478.4 261 92.0
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 7.1e-133 477.6 261 92.3
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 1.7e-131 473.0 261 89.7
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 3.9e-131 471.9 261 89.3
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 5.1e-131 471.5 261 90.0
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.5e-130 469.9 261 89.7
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 3.3e-130 468.8 261 89.3
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 4.3e-130 468.4 261 90.8
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 4.3e-130 468.4 261 90.0
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 5.6e-130 468.0 261 90.4
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 5.6e-130 468.0 261 89.7
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 5.6e-130 468.0 261 89.3
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 5.6e-130 468.0 261 89.3
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 5.6e-130 468.0 261 88.5
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 9.6e-130 467.2 261 89.7
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 9.6e-130 467.2 261 89.7
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 9.6e-130 467.2 261 89.3
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 1.6e-129 466.5 261 89.7
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.6e-129 466.5 261 88.5
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 2.8e-129 465.7 261 89.7
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.8e-129 465.7 261 88.1
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 2.8e-129 465.7 261 88.1
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.8e-129 465.7 261 88.9
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 2.8e-129 465.7 261 89.7
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 3.6e-129 465.3 261 88.5
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 4.8e-129 464.9 261 88.1
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 8.1e-129 464.2 261 87.7
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 8.1e-129 464.2 261 88.1
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 8.1e-129 464.2 261 88.1
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.1e-128 463.8 261 87.4
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 1.1e-128 463.8 261 89.3
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 1.1e-128 463.8 261 88.1
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 1.1e-128 463.8 261 88.1
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 1.4e-128 463.4 261 89.3
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 1.4e-128 463.4 261 88.1
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 1.4e-128 463.4 261 87.4
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.8e-128 463.0 261 88.9
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 1.8e-128 463.0 261 88.1
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 1.8e-128 463.0 261 88.1
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 1.8e-128 463.0 261 89.3
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 2.4e-128 462.6 261 88.5
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 3.1e-128 462.2 261 88.5
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.1e-128 462.2 261 87.0
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 3.1e-128 462.2 261 88.9
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 4.0e-128 461.8 258 89.9
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 4.0e-128 461.8 261 88.1
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 5.3e-128 461.5 265 87.5
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 6.9e-128 461.1 261 88.5
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 6.9e-128 461.1 261 89.3
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 6.9e-128 461.1 260 88.1
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 9.0e-128 460.7 261 88.1
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 9.0e-128 460.7 261 88.1
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 9.0e-128 460.7 261 88.1
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 9.0e-128 460.7 260 88.5
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.2e-127 460.3 261 87.0
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.0e-127 459.5 261 87.4
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 2.6e-127 459.1 261 87.4
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 3.4e-127 458.8 260 88.1
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 3.4e-127 458.8 261 87.0
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 4.5e-127 458.4 261 87.7
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 4.5e-127 458.4 261 87.0
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 5.8e-127 458.0 261 87.0
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 5.8e-127 458.0 261 87.7
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 5.8e-127 458.0 261 88.5
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 7.6e-127 457.6 261 87.4
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 9.9e-127 457.2 261 87.7
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 9.9e-127 457.2 261 87.7
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 9.9e-127 457.2 261 87.4
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 1.7e-126 456.4 260 86.9
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 2.9e-126 455.7 261 86.6
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.9e-126 455.7 261 87.4
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 2.9e-126 455.7 261 88.1
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 3.8e-126 455.3 261 85.8
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 3.8e-126 455.3 261 86.6
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 4.9e-126 454.9 261 86.6
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 4.9e-126 454.9 261 87.0
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 4.9e-126 454.9 264 87.9
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 4.9e-126 454.9 265 86.8
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 6.4e-126 454.5 261 85.4
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 6.4e-126 454.5 261 86.2
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 6.4e-126 454.5 261 86.6
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 8.4e-126 454.1 261 87.4
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 8.4e-126 454.1 261 85.8
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 8.4e-126 454.1 261 87.0
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.9e-125 453.0 261 87.0
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.9e-125 453.0 261 86.6
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 1.9e-125 453.0 260 86.9
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.4e-125 452.6 261 86.6
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 3.2e-125 452.2 263 86.3
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 3.2e-125 452.2 285 81.4
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 7.1e-125 451.1 256 86.7
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 2.1e-124 449.5 261 85.4
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 2.1e-124 449.5 261 85.4
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.1e-124 449.5 261 85.4
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 4.6e-124 448.4 259 88.0
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 4.6e-124 448.4 261 84.7
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 4.6e-124 448.4 261 85.1
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 4.6e-124 448.4 261 85.1
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 7.9e-124 447.6 260 86.5
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 1.0e-123 447.2 261 84.7
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 1.0e-123 447.2 261 84.3
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.0e-123 447.2 261 84.7
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 5.1e-123 444.9 269 84.0
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 5.1e-123 444.9 276 81.9
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 8.7e-123 444.1 261 84.3
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 1.5e-122 443.4 261 84.7
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.5e-122 443.4 256 85.5
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 1.9e-122 443.0 261 84.3
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 1.9e-122 443.0 261 83.5
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 2.5e-122 442.6 261 84.7
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 1.3e-121 440.3 261 83.1
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.8e-120 436.4 261 81.6
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 9.9e-119 430.6 261 83.1
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.7e-118 429.9 277 79.4
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.1e-117 427.2 240 89.2
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 3.2e-117 425.6 261 79.3
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 1.2e-116 423.7 261 80.8
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 1.2e-116 423.7 261 80.8
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 2.5e-114 416.0 261 79.3
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 5.6e-114 414.8 261 76.2
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 1.4e-112 410.2 261 75.9
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 6.9e-112 407.9 241 84.2
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.0e-111 406.4 241 83.8
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.6e-111 406.0 261 80.5
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 3.5e-108 395.6 213 91.1
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 6.7e-107 391.3 261 78.5
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.1e-104 384.0 199 95.5
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 3.1e-104 382.5 263 73.8
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 3.1e-104 382.5 222 86.0
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 1.5e-103 380.2 201 91.5
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 3.4e-103 379.0 309 68.0
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 4.2e-101 372.1 254 75.2
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 5.5e-101 371.7 261 75.5
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 6.1e-100 368.2 240 77.5
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.1e-99 365.2 337 59.9
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 6.7e-99 364.8 195 89.2
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 2.2e-94 349.7 260 66.9
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.2e-92 344.0 257 73.9
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.8e-86 322.4 177 87.0
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 3.9e-83 312.4 161 93.2
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 2.7e-71 273.1 229 59.4
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 4.7e-68 262.3 143 96.5
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 4.7e-68 262.3 240 60.0
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 2.3e-67 260.0 142 96.5
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.8e-56 223.8 113 92.9
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.2e-51 205.7 135 80.7
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 1.1e-48 198.0 98 92.9
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 1.3e-41 174.5 140 66.4
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 2.2e-41 173.7 196 52.6
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 1.6e-39 167.5 100 93.0
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 3.5e-39 166.4 108 75.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 1.1e-37 161.4 271 43.2
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.9e-37 160.6 135 62.2
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 2.1e-36 157.1 92 81.5
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 3.4e-34 149.8 197 46.7
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 2.1e-28 130.6 81 82.7
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.8e-27 127.5 91 71.4
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 5.1e-22 109.4 111 58.6
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 4.4e-18 96.3 68 72.1
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 2.8e-12 77.0 81 55.6
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 6.9e-11 72.4 85 51.8
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 6.4e-09 65.9 38 84.2
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 6.4e-09 65.9 34 97.1
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 3.2e-08 63.5 59 57.6
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 4.2e-08 63.2 42 78.6
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 7.1e-08 62.4 56 60.7
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 1.2e-07 61.6 34 91.2


User provided reference genes

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