Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 6.3e-203 710.7 395 100.0
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 6.6e-160 567.8 339 95.9
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 5.8e-156 554.7 342 93.9
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 5.8e-156 554.7 342 93.9
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 8.1e-150 534.3 344 87.2
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 5.6e-143 511.5 342 87.7
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 1.6e-142 510.0 346 87.3
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 4.9e-139 498.4 343 86.6
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 7.9e-137 491.1 343 84.8
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 7.9e-137 491.1 343 84.8
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.9e-135 486.5 349 80.5
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 1.6e-134 483.4 352 79.3
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 1.0e-131 474.2 353 81.6
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 3.7e-126 455.7 367 72.5
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.8e-125 453.4 366 73.2
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 2.5e-122 443.0 343 73.8
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 9.4e-122 441.0 380 72.1
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 1.5e-119 433.7 350 70.9
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 4.2e-106 389.0 355 66.2
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 1.2e-95 354.4 351 60.1
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 4.4e-95 352.4 348 60.1
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.1e-93 347.8 350 60.0
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 1.1e-93 347.8 350 60.0
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 1.2e-92 344.4 351 59.3
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 7.7e-92 341.7 348 58.3
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 3.6e-89 332.8 347 57.9
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 5.2e-88 328.9 349 57.3
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 8.9e-88 328.2 352 57.4
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 7.0e-85 318.5 350 55.7
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.0e-84 317.0 347 55.3
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 4.5e-84 315.8 350 55.7
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 7.8e-84 315.1 352 55.7
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.0e-83 314.7 350 54.9
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 3.8e-83 312.8 355 56.6
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 5.6e-82 308.9 348 55.5
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 5.6e-82 308.9 348 55.5
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 7.3e-82 308.5 352 53.1
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 9.5e-82 308.1 335 53.7
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 9.5e-82 308.1 345 56.8
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.6e-81 307.4 341 54.5
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 3.6e-81 306.2 376 51.1
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 2.9e-78 296.6 362 51.9
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 1.1e-77 294.7 331 55.3
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.1e-77 294.7 336 56.5
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 5.4e-77 292.4 349 52.7
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 9.2e-77 291.6 348 52.9
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.2e-76 291.2 349 52.4
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.2e-76 291.2 335 53.4
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.7e-76 290.0 348 52.9
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.7e-75 287.3 355 53.0
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 1.7e-75 287.3 346 51.2
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 3.0e-75 286.6 346 52.3
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 1.1e-74 284.6 372 49.5
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 1.5e-74 284.3 349 51.6
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.5e-74 284.3 349 51.6
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 5.6e-74 282.3 348 53.4
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 9.5e-74 281.6 352 52.0
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.6e-73 280.8 340 51.5
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 2.8e-73 280.0 329 54.7
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 4.7e-73 279.3 349 52.1
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 8.0e-73 278.5 346 51.2
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 1.1e-72 278.1 347 52.2
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 3.1e-72 276.6 326 54.0
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 8.9e-72 275.0 358 51.1
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 8.9e-72 275.0 358 51.1
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 7.5e-71 271.9 350 50.3
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.7e-70 270.8 353 49.6
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 2.9e-70 270.0 352 50.0
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 6.4e-70 268.9 333 51.7
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 1.4e-69 267.7 350 48.3
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 1.4e-69 267.7 340 48.8
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 2.4e-69 266.9 357 48.5
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 2.4e-69 266.9 357 48.5
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 7.0e-69 265.4 331 53.5
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 2.7e-68 263.5 331 51.4
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.7e-67 260.8 353 48.2
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 1.7e-67 260.8 345 48.1
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 3.9e-67 259.6 320 50.3
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 4.3e-66 256.1 350 48.3
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 7.3e-66 255.4 343 49.3
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 1.6e-65 254.2 355 52.1
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.6e-65 254.2 353 47.0
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 3.6e-65 253.1 338 48.8
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 4.7e-65 252.7 382 46.9
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 8.1e-65 251.9 361 47.4
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 2.0e-63 247.3 359 46.0
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 2.6e-63 246.9 354 48.9
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 1.3e-62 244.6 350 45.4
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.7e-62 244.2 305 51.1
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 2.2e-62 243.8 343 48.1
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 6.4e-62 242.3 347 46.1
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 4.6e-60 236.1 355 46.5
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 8.6e-59 231.9 343 49.3
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 4.3e-58 229.6 341 49.3
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 5.6e-58 229.2 336 45.5
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 1.2e-57 228.0 300 48.7
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 2.8e-57 226.9 352 44.3
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 3.6e-57 226.5 349 44.7
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 3.6e-57 226.5 273 52.7
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 8.1e-57 225.3 328 46.3
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 8.9e-56 221.9 360 46.9
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 4.2e-53 213.0 337 47.2
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 1.6e-52 211.1 345 43.8
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 2.7e-52 210.3 339 41.3
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 6.0e-52 209.1 338 44.4
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.3e-51 208.0 343 42.6
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.6e-51 205.7 342 41.8
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 1.9e-50 204.1 330 42.7
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 9.6e-50 201.8 325 42.2
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 2.8e-49 200.3 364 39.0
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 8.1e-49 198.7 365 38.9
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 5.3e-48 196.1 353 39.4
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 4.9e-46 189.5 340 42.1
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 6.4e-46 189.1 298 45.3
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 8.4e-46 188.7 332 42.5
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 7.1e-45 185.7 363 37.7
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 3.0e-43 180.3 354 42.9
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.9e-42 177.6 170 61.2
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 4.0e-40 169.9 300 40.7
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 9.0e-40 168.7 358 40.8
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 3.4e-39 166.8 343 42.3
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 2.2e-38 164.1 345 39.1
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 3.2e-37 160.2 372 35.2
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.2e-36 158.3 232 47.0
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 3.5e-36 156.8 128 71.1
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 1.5e-34 151.4 313 36.1
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.3e-33 148.3 271 45.4
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 6.9e-32 142.5 321 34.9
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 6.9e-32 142.5 322 38.2
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.2e-31 141.7 322 36.0
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 4.5e-31 139.8 362 39.5
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 2.3e-27 127.5 320 36.2
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 1.8e-24 117.9 215 40.5
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 7.6e-23 112.5 171 50.3
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.6e-20 104.8 106 54.7
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 6.1e-20 102.8 429 29.4
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 3.9e-19 100.1 331 34.1
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 5.1e-19 99.8 101 57.4
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 2.8e-17 94.0 190 40.5
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 1.1e-16 92.0 173 37.6
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 8.5e-14 82.4 135 45.9
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 1.1e-13 82.0 172 35.5
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 2.3e-11 74.3 135 42.2
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 2.8e-09 67.4 89 46.1
Cre02.g082300 Chlamydomonas reinhardtii HOM05D004638 ORTHO05D005443 4.8e-09 66.6 404 29.2
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 4.5e-07 60.1 50 64.0
BcaC03g13150 Brassica carinata HOM05D004638 ORTHO05D005443 1.0e-06 58.9 30 90.0
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.7e-06 58.2 87 42.5


User provided reference genes

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