Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13143 Brassica carinata HOM05D008885 ORTHO05D006152 3.2e-92 341.7 162 100.0
C02p02150 Brassica napus HOM05D008885 ORTHO05D006152 3.2e-92 341.7 162 100.0
BolC2t06184H Brassica oleracea HOM05D008885 ORTHO05D006152 3.2e-92 341.7 162 100.0
BraA02t04832Z Brassica rapa HOM05D008885 ORTHO05D006152 4.2e-84 314.7 161 91.9
BraA02t04833Z Brassica rapa HOM05D008885 ORTHO05D006152 1.2e-83 313.2 159 91.2
BolC2t06185H Brassica oleracea HOM05D008885 ORTHO05D006152 3.0e-82 308.5 156 91.7
BcaB05g21732 Brassica carinata HOM05D008885 ORTHO05D006152 6.6e-82 307.4 162 88.9
BcaB05g21733 Brassica carinata HOM05D008885 ORTHO05D006152 6.6e-82 307.4 162 88.9
BcaB05g21588 Brassica carinata HOM05D008885 ORTHO05D006152 1.6e-80 302.8 162 87.0
BcaC03g13144 Brassica carinata HOM05D008885 ORTHO05D006152 4.9e-77 291.2 146 91.8
C02p02160 Brassica napus HOM05D008885 ORTHO05D006152 4.9e-77 291.2 146 91.8
BraA02t04831Z Brassica rapa HOM05D008885 ORTHO05D006152 6.2e-72 274.2 164 79.3
BcaC03g13142 Brassica carinata HOM05D008885 ORTHO05D006152 1.1e-71 273.5 164 78.7
BolC2t06182H Brassica oleracea HOM05D008885 ORTHO05D006152 1.1e-71 273.5 164 78.7
BcaB05g21736 Brassica carinata HOM05D008885 ORTHO05D006152 3.4e-70 268.5 161 79.5
BcaB05g21589 Brassica carinata HOM05D008885 ORTHO05D006152 4.2e-60 235.0 184 66.8
BcaB05g21731 Brassica carinata HOM05D008885 ORTHO05D006152 9.3e-52 207.2 124 78.2
Thhalv10015607m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 1.6e-48 196.4 162 67.3
AL5G33880 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 4.8e-48 194.9 156 63.5
Carub.0006s0398 Capsella rubella HOM05D008885 ORTHO05D006152 5.3e-47 191.4 157 64.3
AL6G14830 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 3.2e-44 182.2 142 69.0
CARHR208210 Cardamine hirsuta HOM05D008885 ORTHO05D006152 9.4e-44 180.6 161 62.1
C02p02170 Brassica napus HOM05D008885 ORTHO05D006152 3.1e-39 165.6 161 58.4
BolC2t06186H Brassica oleracea HOM05D008885 ORTHO05D006152 7.7e-38 161.0 161 55.3
BcaC03g13145 Brassica carinata HOM05D008885 ORTHO05D006152 4.7e-35 151.8 88 78.4
AT5G05060 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 5.1e-34 148.3 162 49.4
AT5G05040 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 1.1e-31 140.6 162 46.9
Sp6g37770 Schrenkiella parvula HOM05D008885 ORTHO05D006152 7.7e-30 134.4 138 49.3
Thhalv10015529m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 3.8e-29 132.1 158 46.2
CARHR208050 Cardamine hirsuta HOM05D008885 ORTHO05D006152 2.3e-26 122.9 158 43.0
BraA07t29049Z Brassica rapa HOM05D008885 ORTHO05D006152 1.8e-23 113.2 135 45.2
A07p12710 Brassica napus HOM05D008885 ORTHO05D006152 3.1e-23 112.5 126 46.0
Carub.0002s0168 Capsella rubella HOM05D007210 ORTHO05D006152 2.9e-21 105.9 141 36.9
Carub.0006s0396 Capsella rubella HOM05D008885 ORTHO05D006152 3.8e-21 105.5 147 40.1
Carub.0002s0167 Capsella rubella HOM05D007210 ORTHO05D006152 4.2e-20 102.1 141 37.6
AL2G12260 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 8.0e-19 97.8 154 39.6
AL1G58370 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 1.8e-18 96.7 165 37.0
Carub.0006s0399 Capsella rubella HOM05D008885 ORTHO05D006152 4.4e-17 92.0 156 39.7
AT2G37435 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 7.5e-17 91.3 137 34.3
Carub.0002s0166 Capsella rubella HOM05D007210 ORTHO05D006152 1.7e-16 90.1 162 37.0
Carub.0002s0173 Capsella rubella HOM05D007210 ORTHO05D006152 1.7e-16 90.1 114 43.0
BcaC07g41054 Brassica carinata HOM05D007210 ORTHO05D006152 2.2e-16 89.7 125 36.8
C03p93270 Brassica napus HOM05D007210 ORTHO05D006152 1.1e-15 87.4 150 38.7
BolC3t21625H Brassica oleracea HOM05D007210 ORTHO05D006152 1.1e-15 87.4 150 38.7
CARHR270660 Cardamine hirsuta HOM05D007210 ORTHO05D006152 1.1e-15 87.4 152 34.9
AT1G63190 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.8e-15 86.7 146 37.0
AT1G63205 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 3.1e-15 85.9 157 36.9
BraA09t37003Z Brassica rapa HOM05D007210 ORTHO05D006152 3.1e-15 85.9 150 38.0
A09p13520 Brassica napus HOM05D007210 ORTHO05D006152 7.0e-15 84.7 150 38.0
Carub.0002s0174 Capsella rubella HOM05D007210 ORTHO05D006152 7.0e-15 84.7 162 35.8
AL2G12250 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 9.1e-15 84.3 156 35.9
AL2G12300 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 9.1e-15 84.3 147 37.4
BcaC02g10394 Brassica carinata HOM05D007210 ORTHO05D006152 9.1e-15 84.3 132 35.6
BraA08t32080Z Brassica rapa HOM05D007210 ORTHO05D006152 1.2e-14 84.0 150 38.0
BcaB01g02146 Brassica carinata HOM05D007210 ORTHO05D006152 1.6e-14 83.6 147 35.4
AL4G33850 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.7e-14 82.8 133 33.8
BcaB07g31387 Brassica carinata HOM05D007210 ORTHO05D006152 4.5e-14 82.0 139 33.8
A08p00230 Brassica napus HOM05D007210 ORTHO05D006152 5.9e-14 81.6 114 39.5
BcaNung06875 Brassica carinata HOM05D007210 ORTHO05D006152 7.7e-14 81.3 113 39.8
Carub.0002s0171 Capsella rubella HOM05D007210 ORTHO05D006152 1.0e-13 80.9 146 34.2
A09p15630 Brassica napus HOM05D007210 ORTHO05D006152 1.3e-13 80.5 140 35.0
BraA09t37203Z Brassica rapa HOM05D007210 ORTHO05D006152 1.3e-13 80.5 140 35.0
Carub.0002s0169 Capsella rubella HOM05D007210 ORTHO05D006152 1.7e-13 80.1 127 35.4
AT1G63200 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 3.8e-13 79.0 139 36.0
AL2G12270 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 5.0e-13 78.6 128 37.5
Thhalv10023669m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 8.5e-13 77.8 150 36.0
A10p03420 Brassica napus HOM05D007210 ORTHO05D006152 1.9e-12 76.6 95 38.9
BraA10t42618Z Brassica rapa HOM05D007210 ORTHO05D006152 1.9e-12 76.6 95 38.9
AL2G12280 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 3.2e-12 75.9 126 35.7
BolC5t29096H Brassica oleracea HOM05D007210 ORTHO05D006152 5.5e-12 75.1 97 36.1
Thhalv10023855m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 9.5e-12 74.3 158 29.7
AL2G12320 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.2e-11 73.9 133 35.3
Carub.0002s0170 Capsella rubella HOM05D007210 ORTHO05D006152 1.2e-11 73.9 142 33.1
AL2G12230 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.6e-11 73.6 112 34.8
BcaC05g24442 Brassica carinata HOM05D007210 ORTHO05D006152 2.1e-11 73.2 108 34.3
Carub.0004s1937 Capsella rubella HOM05D007210 ORTHO05D006152 8.0e-11 71.2 132 33.3
AL2G12220 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.4e-10 70.5 112 33.9
BraA10t43511Z Brassica rapa HOM05D007210 ORTHO05D006152 1.8e-10 70.1 110 36.4
C05p03140 Brassica napus HOM05D007210 ORTHO05D006152 3.0e-10 69.3 99 34.3
AL2G12200 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.2e-09 67.4 104 37.5
Carub.0004s1936 Capsella rubella HOM05D007210 ORTHO05D006152 2.0e-09 66.6 135 31.1
BcaB01g04427 Brassica carinata HOM05D007210 ORTHO05D006152 3.4e-09 65.9 140 31.4
CARHR284440 Cardamine hirsuta HOM05D007210 ORTHO05D006152 3.4e-09 65.9 139 28.8
A03p13080 Brassica napus HOM05D007210 ORTHO05D006152 4.4e-09 65.5 121 34.7
BolC3t13970H Brassica oleracea HOM05D007210 ORTHO05D006152 4.4e-09 65.5 121 33.9
BraA03t10619Z Brassica rapa HOM05D007210 ORTHO05D006152 4.4e-09 65.5 121 34.7
BcaC01g06453 Brassica carinata HOM05D007210 ORTHO05D006152 5.7e-09 65.1 139 32.4
BcaNung05242 Brassica carinata HOM05D007210 ORTHO05D006152 5.7e-09 65.1 139 32.4
Carub.0008s1740 Capsella rubella HOM05D007210 ORTHO05D006152 5.7e-09 65.1 139 30.9
BcaC01g06454 Brassica carinata HOM05D007210 ORTHO05D006152 7.5e-09 64.7 137 33.6
C03p15300 Brassica napus HOM05D007210 ORTHO05D006152 7.5e-09 64.7 137 33.6
BraA03t10618Z Brassica rapa HOM05D007210 ORTHO05D006152 7.5e-09 64.7 136 32.4
AT1G63206 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.7e-08 63.5 116 31.9
C09p48590 Brassica napus HOM05D007210 ORTHO05D006152 1.7e-08 63.5 104 33.7
BcaC01g06452 Brassica carinata HOM05D007210 ORTHO05D006152 2.2e-08 63.2 124 32.3
THA.LOC104809659 Tarenaya hassleriana HOM05D007210 ORTHO05D006152 2.2e-08 63.2 100 38.0
BcaNung05243 Brassica carinata HOM05D007210 ORTHO05D006152 3.7e-08 62.4 123 32.5
A10p14200 Brassica napus HOM05D007210 ORTHO05D006152 3.7e-08 62.4 139 28.8
BraA10t43513Z Brassica rapa HOM05D007210 ORTHO05D006152 3.7e-08 62.4 139 28.8
CARHR048280 Cardamine hirsuta HOM05D007210 ORTHO05D006152 4.9e-08 62.0 97 37.1
A10p14180 Brassica napus HOM05D007210 ORTHO05D006152 8.3e-08 61.2 139 30.2
BraA10t43512Z Brassica rapa HOM05D007210 ORTHO05D006152 1.1e-07 60.8 116 31.0
AL8G32780 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.8e-07 60.1 112 32.1
A10p14190 Brassica napus HOM05D007210 ORTHO05D006152 2.4e-07 59.7 116 31.0
BolC8t51626H Brassica oleracea HOM05D007210 ORTHO05D006152 2.4e-07 59.7 80 37.5
BcaB01g04428 Brassica carinata HOM05D007210 ORTHO05D006152 3.5e-06 55.8 154 29.2
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.5e-06 55.5 94 37.2
AL8G32770 Arabidopsis lyrata HOM05D008242 ORTHO05D010974 7.7e-06 54.7 96 30.2


User provided reference genes

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