Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p02030 Brassica napus HOM05D000529 ORTHO05D000472 1.9e-92 342.8 219 100.0
BolC2t06160H Brassica oleracea HOM05D000529 ORTHO05D000472 9.6e-92 340.5 219 99.5
BcaB05g21751 Brassica carinata HOM05D000529 ORTHO05D000472 6.7e-53 211.5 181 74.6
BcaB05g21752 Brassica carinata HOM05D000529 ORTHO05D000472 4.8e-51 205.3 149 71.8
CARHR208570 Cardamine hirsuta HOM05D000529 ORTHO05D000472 2.0e-41 173.3 146 61.0
Sp6g38100 Schrenkiella parvula HOM05D000529 ORTHO05D000472 2.0e-41 173.3 146 62.3
AT5G04720 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 5.0e-40 168.7 146 57.5
C09p72120 Brassica napus HOM05D000529 ORTHO05D000472 5.0e-40 168.7 146 61.6
BolC9t59956H Brassica oleracea HOM05D000529 ORTHO05D000472 5.0e-40 168.7 146 61.6
BraA10t45190Z Brassica rapa HOM05D000529 ORTHO05D000472 6.5e-40 168.3 146 61.6
A10p31440 Brassica napus HOM05D000529 ORTHO05D000472 1.4e-39 167.2 146 61.0
AL6G14380 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 7.2e-39 164.9 146 56.2
Carub.0006s0361 Capsella rubella HOM05D000529 ORTHO05D000472 7.9e-38 161.4 142 59.9
Thhalv10012720m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 4.4e-36 155.6 146 55.5
A08p17700 Brassica napus HOM05D000529 ORTHO05D000472 1.2e-33 147.5 142 54.9
BraA08t33720Z Brassica rapa HOM05D000529 ORTHO05D000472 1.2e-33 147.5 142 54.9
BcaC01g00997 Brassica carinata HOM05D000529 ORTHO05D000472 4.5e-33 145.6 142 54.2
BolC3t20969H Brassica oleracea HOM05D000529 ORTHO05D000472 4.5e-33 145.6 142 54.2
Thhalv10024421m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 7.7e-33 144.8 142 53.5
BcaB03g12806 Brassica carinata HOM05D000529 ORTHO05D000472 2.9e-32 142.9 142 52.1
Sp7g31030 Schrenkiella parvula HOM05D000529 ORTHO05D000472 2.9e-32 142.9 146 50.7
Aa31LG11G5560 Aethionema arabicum HOM05D000529 ORTHO05D000472 6.5e-32 141.7 144 49.3
Aa31LG7G9260 Aethionema arabicum HOM05D000529 ORTHO05D000472 1.5e-31 140.6 146 49.3
C03p86760 Brassica napus HOM05D000529 ORTHO05D000472 4.2e-31 139.0 146 52.1
Carub.0007s0717 Capsella rubella HOM05D000529 ORTHO05D000472 5.5e-31 138.7 146 50.0
A01p04930 Brassica napus HOM05D000529 ORTHO05D000472 2.7e-30 136.3 146 49.3
CARHR241370 Cardamine hirsuta HOM05D000529 ORTHO05D000472 4.7e-30 135.6 146 50.0
CARHR175210 Cardamine hirsuta HOM05D000005 ORTHO05D012152 6.1e-30 135.2 146 50.0
BcaC06g32180 Brassica carinata HOM05D000529 ORTHO05D000472 8.0e-30 134.8 110 62.7
BcaC09g52139 Brassica carinata HOM05D000529 ORTHO05D000472 8.0e-30 134.8 146 48.6
BraA01t00475Z Brassica rapa HOM05D000529 ORTHO05D000472 8.0e-30 134.8 146 48.6
AL7G18240 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 3.0e-29 132.9 146 48.6
BcaC09g52148 Brassica carinata HOM05D000529 ORTHO05D000472 3.0e-29 132.9 146 48.6
C01p05330 Brassica napus HOM05D000529 ORTHO05D000472 3.0e-29 132.9 146 48.6
BolC1t00513H Brassica oleracea HOM05D000529 ORTHO05D000472 3.0e-29 132.9 146 48.6
AL7G19240 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 2.6e-28 129.8 131 53.4
AT3G26470 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 2.6e-28 129.8 131 53.4
AT4G33300 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 7.5e-28 128.3 146 47.9
CARHR240480 Cardamine hirsuta HOM05D000529 ORTHO05D033773 1.7e-27 127.1 134 50.0
C01p06470 Brassica napus HOM05D000529 ORTHO05D000472 2.8e-27 126.3 139 48.9
BolC1t00641H Brassica oleracea HOM05D000529 ORTHO05D000472 4.1e-26 122.5 139 46.8
THA.LOC104803687 Tarenaya hassleriana HOM05D000529 ORTHO05D000472 1.6e-25 120.6 149 42.3
AL1G47950 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 1.0e-24 117.9 146 46.6
CARHR176930 Cardamine hirsuta HOM05D000529 ORTHO05D000472 1.3e-24 117.5 116 50.0
Carub.0008s0668 Capsella rubella HOM05D000529 ORTHO05D000472 5.0e-24 115.5 138 46.4
Carub.0008s0669 Capsella rubella HOM05D000529 ORTHO05D000472 5.0e-24 115.5 138 46.4
BcaB03g13136 Brassica carinata HOM05D000529 ORTHO05D000472 1.5e-23 114.0 144 44.4
AT1G33560 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 3.2e-23 112.8 146 44.5
Carub.0001s3174 Capsella rubella HOM05D000529 ORTHO05D000472 9.4e-23 111.3 127 48.8
Oeu009568.1 Olea europaea HOM05D000529 ORTHO05D000472 2.1e-22 110.2 148 39.9
Oeu033639.1 Olea europaea HOM05D000529 ORTHO05D000472 3.6e-22 109.4 148 40.5
Phvul.001G018900 Phaseolus vulgaris HOM05D000529 ORTHO05D000472 1.4e-21 107.5 141 44.0
Actinidia22597 Actinidia chinensis HOM05D000529 ORTHO05D000472 1.8e-21 107.1 146 37.7
Gohir.A01G118200 Gossypium hirsutum HOM05D000529 ORTHO05D000472 2.3e-21 106.7 140 41.4
Gorai.002G130700 Gossypium raimondii HOM05D000529 ORTHO05D000472 2.3e-21 106.7 140 41.4
VMungo0647G1042 Vigna mungo HOM05D000529 ORTHO05D000472 2.3e-21 106.7 141 43.3
Glyma.17G245500 Glycine max HOM05D000529 ORTHO05D000472 3.0e-21 106.3 141 41.8
Gohir.D01G106500 Gossypium hirsutum HOM05D000529 ORTHO05D000472 3.0e-21 106.3 140 41.4
EL10Ac1g01813 Beta vulgaris HOM05D000529 ORTHO05D000472 4.0e-21 105.9 146 40.4
AUR62031372 Chenopodium quinoa HOM05D000529 ORTHO05D000472 4.0e-21 105.9 146 42.5
Dinv39347 Davidia involucrata HOM05D000529 ORTHO05D000472 5.2e-21 105.5 144 42.4
Duzib041G0187 Durio zibethinus HOM05D000529 ORTHO05D000472 5.2e-21 105.5 138 42.8
Gorai.009G275000 Gossypium raimondii HOM05D000529 ORTHO05D000472 5.2e-21 105.5 138 42.8
SGA_v2.0_scaffold217G42412 Striga asiatica HOM05D000529 ORTHO05D000472 5.2e-21 105.5 144 40.3
TPR.G13696 Trifolium pratense HOM05D000529 ORTHO05D000472 6.8e-21 105.1 141 44.0
Psat6g011240 Pisum sativum HOM05D000529 ORTHO05D000472 8.8e-21 104.8 141 41.8
Haze_17579 Corylus avellana HOM05D000529 ORTHO05D000472 1.2e-20 104.4 144 40.3
Glyma.14G079600 Glycine max HOM05D000529 ORTHO05D000472 1.2e-20 104.4 141 41.8
Gohir.D05G263200 Gossypium hirsutum HOM05D000529 ORTHO05D000472 1.2e-20 104.4 138 42.0
COL.COLO4_26439 Corchorus olitorius HOM05D000529 ORTHO05D000472 2.0e-20 103.6 138 42.8
Gohir.A05G199700 Gossypium hirsutum HOM05D000529 ORTHO05D000472 2.6e-20 103.2 138 43.5
Gohir.D05G202700 Gossypium hirsutum HOM05D000529 ORTHO05D000472 2.6e-20 103.2 138 43.5
Gorai.009G208600 Gossypium raimondii HOM05D000529 ORTHO05D000472 2.6e-20 103.2 138 43.5
Hma1.2p1_0337F.1_g129230 Hydrangea macrophylla HOM05D000529 ORTHO05D000472 2.6e-20 103.2 149 40.9
Ciclev10000281m.g Citrus clementina HOM05D000529 ORTHO05D000472 3.4e-20 102.8 146 39.7
Duzib093G1494 Durio zibethinus HOM05D000529 ORTHO05D000472 3.4e-20 102.8 139 41.7
SalBow7G4054 Salvia bowleyana HOM05D000529 ORTHO05D000472 3.4e-20 102.8 144 40.3
MSTRG.1325 Avicennia marina HOM05D000529 ORTHO05D000472 4.4e-20 102.4 144 38.2
Medtr1g021100 Medicago truncatula HOM05D000529 ORTHO05D000472 4.4e-20 102.4 138 43.5
CSS0020808 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 5.7e-20 102.1 146 40.4
CSS0046943 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 5.7e-20 102.1 146 40.4
DCAR_020939 Daucus carota HOM05D000529 ORTHO05D000472 7.5e-20 101.7 146 41.1
Lj4A49T79 Lonicera japonica HOM05D000529 ORTHO05D000472 7.5e-20 101.7 144 41.7
Sc02g0006820 Simmondsia chinensis HOM05D000529 ORTHO05D000472 7.5e-20 101.7 141 43.3
TWI36G0871 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 7.5e-20 101.7 138 40.6
AUR62033886 Chenopodium quinoa HOM05D000529 ORTHO05D000472 9.8e-20 101.3 146 41.1
Lj5g0007019 Lotus japonicus HOM05D000529 ORTHO05D000472 9.8e-20 101.3 138 43.5
MD08G1041800 Malus domestica HOM05D000529 ORTHO05D000472 9.8e-20 101.3 146 39.7
Manes.05G169600 Manihot esculenta HOM05D000529 ORTHO05D000472 9.8e-20 101.3 146 39.7
Hund06330 Selenicereus undatus HOM05D000529 ORTHO05D000472 9.8e-20 101.3 146 38.4
arahy.Tifrunner.gnm1.ann1.3L0H24 Arachis hypogaea HOM05D000529 ORTHO05D000472 1.3e-19 100.9 138 42.8
arahy.Tifrunner.gnm1.ann1.FF44RV Arachis hypogaea HOM05D000529 ORTHO05D000472 1.3e-19 100.9 138 42.8
CiPaw.15G065600 Carya illinoinensis HOM05D000529 ORTHO05D000472 1.3e-19 100.9 146 39.7
TAR628G0230 Trochodendron aralioides HOM05D000431 ORTHO05D000472 1.3e-19 100.9 144 40.3
Phvul.001G018800 Phaseolus vulgaris HOM05D000529 ORTHO05D000472 2.2e-19 100.1 138 39.1
Psat6g011280 Pisum sativum HOM05D000529 ORTHO05D000472 2.8e-19 99.8 138 41.3
MD08G1042500 Malus domestica HOM05D000529 ORTHO05D000472 3.7e-19 99.4 146 39.0
Actinidia15273 Actinidia chinensis HOM05D000529 ORTHO05D000472 4.8e-19 99.0 146 39.7
Potri.014G035700 Populus trichocarpa HOM05D000529 ORTHO05D000472 4.8e-19 99.0 143 39.9
Ah.05g178400 Amaranthus hybridus HOM05D000529 ORTHO05D000472 6.3e-19 98.6 146 38.4
Cfa018498 Carpinus fangiana HOM05D000529 ORTHO05D000472 6.3e-19 98.6 142 39.4
Psat6g011320 Pisum sativum HOM05D000529 ORTHO05D000472 6.3e-19 98.6 138 40.6
QL02p006227 Quercus lobata HOM05D000529 ORTHO05D000472 6.3e-19 98.6 146 35.6
VMungo0647G0275 Vigna mungo HOM05D000529 ORTHO05D000472 6.3e-19 98.6 138 39.1
Glyma.17G245600 Glycine max HOM05D000529 ORTHO05D000472 8.3e-19 98.2 138 41.3
CARHR033000 Cardamine hirsuta HOM05D000529 ORTHO05D000472 1.1e-18 97.8 95 53.7
Lalb_Chr24g0399151 Lupinus albus HOM05D000529 ORTHO05D000472 1.1e-18 97.8 134 41.8
Nn5g29354 Nelumbo nucifera HOM05D000529 ORTHO05D000472 1.1e-18 97.8 148 35.8
TWI56G0719 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 1.1e-18 97.8 145 37.9
ClCG05G019540 Citrullus lanatus HOM05D000529 ORTHO05D000472 1.4e-18 97.4 150 37.3
Sabra14G0025500 Salix brachista HOM05D000529 ORTHO05D000472 1.4e-18 97.4 143 38.5
MSTRG.25117 Avicennia marina HOM05D000529 ORTHO05D000472 1.8e-18 97.1 133 39.1
Lsat_1_v5_gn_1_19281 Lactuca sativa HOM05D000529 ORTHO05D000472 1.8e-18 97.1 146 39.0
TWI56G1471 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 1.8e-18 97.1 149 36.9
CAN.G371.66 Capsicum annuum HOM05D000529 ORTHO05D000472 2.4e-18 96.7 148 37.2
Cpa.g.sc64.11 Carica papaya HOM05D000529 ORTHO05D000472 2.4e-18 96.7 136 39.7
Solyc04g079420.3 Solanum lycopersicum HOM05D000529 ORTHO05D000472 2.4e-18 96.7 148 37.2
Sopen04g033030 Solanum pennellii HOM05D000529 ORTHO05D000472 2.4e-18 96.7 148 37.2
ECA247G1205 Erigeron canadensis HOM05D000529 ORTHO05D000472 3.1e-18 96.3 146 38.4
Sed0018592 Sechium edule HOM05D000529 ORTHO05D000472 3.1e-18 96.3 150 36.0
vmacro21576 Vaccinium macrocarpon HOM05D000529 ORTHO05D000472 3.1e-18 96.3 147 38.8
FAN27G0934 Fragaria x ananassa HOM05D000529 ORTHO05D000472 4.1e-18 95.9 138 39.1
Potri.002G129300 Populus trichocarpa HOM05D000529 ORTHO05D000472 5.4e-18 95.5 143 37.8
Ca_13313_v3 Cicer arietinum L. HOM05D000529 ORTHO05D000472 7.0e-18 95.1 141 40.4
MELO3C016725.2 Cucumis melo HOM05D000529 ORTHO05D000472 7.0e-18 95.1 150 36.7
HanXRQChr02g0046611 Helianthus annuus HOM05D000529 ORTHO05D000472 7.0e-18 95.1 146 38.4
Atru.chr13.609 Acer truncatum HOM05D000529 ORTHO05D000472 9.1e-18 94.7 144 36.8
CsaV3_4G034000 Cucumis sativus L. HOM05D000529 ORTHO05D000472 9.1e-18 94.7 150 36.0
PGSC0003DMG400007999 Solanum tuberosum HOM05D000529 ORTHO05D000472 9.1e-18 94.7 148 35.8
RcHm_v2.0_Chr6g0299881 Rosa chinensis HOM05D000529 ORTHO05D000472 1.2e-17 94.4 138 37.7
MD08G1042400 Malus domestica HOM05D000529 ORTHO05D000472 1.6e-17 94.0 139 41.0
Eucgr.F02383 Eucalyptus grandis HOM05D000529 ORTHO05D000472 2.0e-17 93.6 149 38.3
Dinv36002 Davidia involucrata HOM05D000529 ORTHO05D000472 2.7e-17 93.2 146 38.4
Prupe.1G389500 Prunus persica HOM05D000529 ORTHO05D000472 2.7e-17 93.2 136 40.4
Ca_13314_v3 Cicer arietinum L. HOM05D000529 ORTHO05D000472 4.5e-17 92.4 138 39.9
FvH4_2g40720 Fragaria vesca HOM05D000529 ORTHO05D000472 5.9e-17 92.0 143 36.4
Medtr1g021110 Medicago truncatula HOM05D000529 ORTHO05D000472 7.7e-17 91.7 124 41.1
Nn6g32096 Nelumbo nucifera HOM05D000529 ORTHO05D000472 7.7e-17 91.7 140 39.3
FAN15G0230 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.0e-16 91.3 147 36.1
Glyma.14G079500 Glycine max HOM05D000529 ORTHO05D000472 1.0e-16 91.3 136 39.0
HanXRQChr05g0129181 Helianthus annuus HOM05D000529 ORTHO05D000472 1.0e-16 91.3 146 37.7
CANSAT25G0052 Cannabis sativa HOM05D000529 ORTHO05D000472 1.3e-16 90.9 137 39.4
Lj5g0004486 Lotus japonicus HOM05D000529 ORTHO05D000472 1.7e-16 90.5 122 41.8
Sabra02G0101400 Salix brachista HOM05D000529 ORTHO05D000472 1.7e-16 90.5 143 36.4
Haze_17507 Corylus avellana HOM05D000529 ORTHO05D000472 3.8e-16 89.4 146 37.0
Aqoxy5G01761_Aqoxy5G01762 Aquilegia oxysepala HOM05D000529 ORTHO05D000472 1.9e-15 87.0 129 39.5
Rhsim06G0041900 Rhododendron simsii HOM05D000529 ORTHO05D000472 7.2e-15 85.1 149 34.2
PGR031G3276 Punica granatum HOM05D000529 ORTHO05D000472 4.7e-14 82.4 149 30.9
PGR031G1757 Punica granatum HOM05D000529 ORTHO05D000472 1.2e-12 77.8 136 34.6
PGR031G2883 Punica granatum HOM05D000529 ORTHO05D000472 3.1e-10 69.7 149 27.5
MBI16_g24703_MAGBIO Magnolia biondii HOM05D000529 ORTHO05D000472 4.1e-10 69.3 142 31.7
Cfa018573 Carpinus fangiana HOM05D000529 ORTHO05D000472 1.5e-07 60.8 105 35.2
arahy.Tifrunner.gnm1.ann1.CDD4S1 Arachis hypogaea HOM05D000529 ORTHO05D000472 4.3e-07 59.3 78 44.9
arahy.Tifrunner.gnm1.ann1.EUC3GX Arachis hypogaea HOM05D000529 ORTHO05D000472 4.3e-07 59.3 78 44.9
Peaxi162Scf01092g00129 Petunia axillaris HOM05D000529 ORTHO05D000472 2.8e-06 56.6 148 27.7
Carub.0006s2702 Capsella rubella HOM05D000083 ORTHO05D001732 3.6e-06 56.2 92 37.0


User provided reference genes

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