Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p01710 Brassica napus HOM05D007309 ORTHO05D010099 1.2e-296 1022.3 490 100.0
BolC2t06164H Brassica oleracea HOM05D007309 ORTHO05D021684 2.3e-231 805.4 404 94.8
C02p02060 Brassica napus HOM05D007309 ORTHO05D021684 8.9e-231 803.5 404 94.6
BolC2t06133H Brassica oleracea HOM05D007309 ORTHO05D021684 8.9e-231 803.5 403 94.0
BolC2t06167H Brassica oleracea HOM05D007309 ORTHO05D021684 4.3e-225 784.6 427 89.2
BcaC03g13128 Brassica carinata HOM05D007309 ORTHO05D021684 3.8e-221 771.5 393 93.6
BcaC03g13124 Brassica carinata HOM05D007309 ORTHO05D021684 3.9e-218 761.5 393 92.4
BcaC03g12964 Brassica carinata HOM05D007309 ORTHO05D010099 1.7e-173 613.2 390 79.7
BcaB05g21746 Brassica carinata HOM05D007309 ORTHO05D010099 1.7e-160 570.1 377 73.2
BcaC06g31633 Brassica carinata HOM05D007309 ORTHO05D010099 3.9e-109 399.4 280 70.4
BolC2t07109H Brassica oleracea HOM05D007309 ORTHO05D040036 4.9e-88 329.3 394 48.2
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 1.1e-84 318.2 384 47.1
BraA02t04794Z Brassica rapa HOM05D007309 ORTHO05D010099 4.8e-75 286.2 395 46.6
C02p01790 Brassica napus HOM05D007309 ORTHO05D010099 3.1e-74 283.5 382 46.1
BcaB05g21772 Brassica carinata HOM05D007309 ORTHO05D010099 5.3e-74 282.7 408 44.9
BcaC03g12956 Brassica carinata HOM05D007309 ORTHO05D010099 6.9e-74 282.3 430 43.0
BolC2t06135H Brassica oleracea HOM05D007309 ORTHO05D010099 9.0e-74 282.0 382 46.1
C02p01630 Brassica napus HOM05D007309 ORTHO05D010099 2.0e-73 280.8 382 44.0
BcaC03g12970 Brassica carinata HOM05D007309 ORTHO05D010099 1.3e-72 278.1 377 43.8
C02p01480 Brassica napus HOM05D007309 ORTHO05D010099 1.2e-70 271.6 382 45.8
BcaC03g12963 Brassica carinata HOM05D007309 ORTHO05D010099 1.0e-69 268.5 383 45.4
BcaB05g21792 Brassica carinata HOM05D007309 ORTHO05D010099 8.7e-69 265.4 384 44.5
BcaB05g21775 Brassica carinata HOM05D007309 ORTHO05D010099 3.3e-68 263.5 390 43.8
BcaC03g12986 Brassica carinata HOM05D007309 ORTHO05D010099 4.3e-68 263.1 395 43.3
C02p01750 Brassica napus HOM05D007309 ORTHO05D010099 9.7e-68 261.9 380 43.7
C02p01340 Brassica napus HOM05D007309 ORTHO05D010099 1.6e-67 261.2 395 43.0
C02p01720 Brassica napus HOM05D007309 ORTHO05D010099 2.8e-67 260.4 398 43.5
BolC2t06110H Brassica oleracea HOM05D007309 ORTHO05D010099 6.3e-67 259.2 366 44.8
BcaC03g12960 Brassica carinata HOM05D007309 ORTHO05D010099 2.6e-65 253.8 366 43.4
BcaC03g17362 Brassica carinata HOM05D007309 ORTHO05D032575 1.0e-64 251.9 388 39.7
C02p53010 Brassica napus HOM05D007309 ORTHO05D032575 1.0e-64 251.9 388 39.7
BcaC03g12961 Brassica carinata HOM05D007309 ORTHO05D010099 1.3e-64 251.5 380 42.4
BraA02t04799Z Brassica rapa HOM05D007309 ORTHO05D010099 7.2e-63 245.7 383 43.1
C02p01800 Brassica napus HOM05D007309 ORTHO05D010099 9.4e-63 245.4 416 40.9
C02p01380 Brassica napus HOM05D007309 ORTHO05D010099 8.8e-61 238.8 305 48.2
BcaC03g12957 Brassica carinata HOM05D007309 ORTHO05D010099 2.6e-57 227.3 410 40.0
BcaC03g12955 Brassica carinata HOM05D007309 ORTHO05D010099 1.1e-55 221.9 351 43.0
C02p01780 Brassica napus HOM05D007309 ORTHO05D010099 1.1e-55 221.9 406 40.6
BolC2t11370H Brassica oleracea HOM05D007309 ORTHO05D032575 5.5e-55 219.5 388 37.6
BcaC09g51621 Brassica carinata HOM05D007309 ORTHO05D010099 1.6e-54 218.0 397 36.8
BcaB05g21785 Brassica carinata HOM05D007309 ORTHO05D010099 2.1e-54 217.6 314 46.5
BraA01t00916Z Brassica rapa HOM05D007309 ORTHO05D010099 4.7e-54 216.5 401 36.9
BraA01t00993Z Brassica rapa HOM05D007309 ORTHO05D010099 5.7e-52 209.5 415 35.9
BolC2t06134H Brassica oleracea HOM05D007309 ORTHO05D010099 2.2e-51 207.6 349 40.4
BcaC03g12991 Brassica carinata HOM05D007309 ORTHO05D010099 1.4e-50 204.9 387 39.5
A01p10480 Brassica napus HOM05D007309 ORTHO05D010099 2.4e-50 204.1 401 36.2
A01p09730 Brassica napus HOM05D007309 ORTHO05D010099 9.1e-50 202.2 395 35.7
BcaC03g12967 Brassica carinata HOM05D003180 ORTHO05D014840 4.4e-44 183.3 357 36.7
BcaC05g26633 Brassica carinata HOM05D007309 ORTHO05D010099 4.0e-37 160.2 377 32.9
C02p01460 Brassica napus HOM05D007309 ORTHO05D010099 1.7e-35 154.8 188 44.7
C02p01240 Brassica napus HOM05D007309 ORTHO05D010099 3.7e-35 153.7 226 45.1
Thhalv10014127m.g Eutrema salsugineum HOM05D007309 ORTHO05D010099 7.7e-33 146.0 287 36.2
C02p01200 Brassica napus HOM05D007309 ORTHO05D010099 2.5e-31 141.0 166 46.4
BolC2t06111H Brassica oleracea HOM05D007309 ORTHO05D010099 2.1e-30 137.9 166 45.8
BcaB05g21793 Brassica carinata HOM05D007309 ORTHO05D010099 4.7e-30 136.7 148 49.3
AL4G33320 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 1.8e-29 134.8 374 31.6
C02p01680 Brassica napus HOM05D007309 ORTHO05D014840 8.8e-29 132.5 159 44.7
BolC2t07383H Brassica oleracea HOM05D000026 ORTHO05D027236 4.4e-28 130.2 69 87.0
BolC3t14123H Brassica oleracea HOM05D000589 ORTHO05D000401 2.8e-27 127.5 73 79.5
BolC2t06143H Brassica oleracea HOM05D007309 ORTHO05D010099 2.4e-26 124.4 135 48.1
BolC6t37666H Brassica oleracea HOM05D000214 ORTHO05D000131 2.0e-25 121.3 71 78.9
BolC1t01104H Brassica oleracea HOM05D007309 ORTHO05D010099 2.7e-25 120.9 274 38.3
Carub.0004s1446 Capsella rubella HOM05D007309 ORTHO05D015909 5.9e-25 119.8 375 29.9
AL5G13820 Arabidopsis lyrata HOM05D007309 ORTHO05D010099 1.0e-24 119.0 169 39.6
Carub.0004s1451 Capsella rubella HOM05D007309 ORTHO05D015909 1.0e-24 119.0 389 29.6
BolC6t36374H Brassica oleracea HOM05D000214 ORTHO05D027157 2.9e-24 117.5 73 78.1
BolC6t36376H Brassica oleracea HOM05D042146 ORTHO05D027157 2.9e-24 117.5 73 78.1
BolC9t58094H Brassica oleracea HOM05D000214 ORTHO05D000131 2.9e-24 117.5 73 72.6
AL4G34490 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 1.9e-23 114.8 355 31.0
Carub.0004s1897 Capsella rubella HOM05D007309 ORTHO05D015909 1.9e-23 114.8 375 28.5
AL4G19130 Arabidopsis lyrata HOM05D007309 ORTHO05D010099 9.5e-23 112.5 168 39.9
C01p11350 Brassica napus HOM05D007309 ORTHO05D010099 9.5e-23 112.5 271 37.6
A04p22460 Brassica napus HOM05D007309 ORTHO05D010099 1.2e-22 112.1 173 38.2
BolC1t02777H Brassica oleracea HOM05D000214 ORTHO05D000131 2.1e-22 111.3 67 76.1
BcaB04g19150 Brassica carinata HOM05D000214 ORTHO05D000131 2.8e-22 110.9 80 68.8
BolC2t06128H Brassica oleracea HOM05D007309 ORTHO05D010099 4.7e-22 110.2 171 41.5
CARHR100300 Cardamine hirsuta HOM05D000214 ORTHO05D013285 4.0e-21 107.1 73 64.4
BolC6t36891H Brassica oleracea HOM05D000214 ORTHO05D000131 8.9e-21 105.9 73 65.8
BcaC01g05143 Brassica carinata HOM05D007309 ORTHO05D031751 1.2e-20 105.5 184 39.1
BcaC02g07711 Brassica carinata HOM05D000214 ORTHO05D000131 2.6e-20 104.4 73 64.4
CARHR051840 Cardamine hirsuta HOM05D000214 ORTHO05D000131 2.6e-20 104.4 73 63.0
CARHR271650 Cardamine hirsuta HOM05D000214 ORTHO05D000131 3.4e-20 104.0 73 65.8
CARHR096030 Cardamine hirsuta HOM05D000214 ORTHO05D013285 1.3e-19 102.1 73 63.0
BcaC03g12974 Brassica carinata HOM05D007309 ORTHO05D006097 2.2e-19 101.3 204 36.8
CARHR064670 Cardamine hirsuta HOM05D000214 ORTHO05D013285 2.2e-19 101.3 72 61.1
C02p01690 Brassica napus HOM05D007309 ORTHO05D010099 2.9e-19 100.9 131 45.8
CARHR058310 Cardamine hirsuta HOM05D000214 ORTHO05D013285 3.7e-19 100.5 72 62.5
BolC1t01103H Brassica oleracea HOM05D007309 ORTHO05D010099 1.1e-18 99.0 158 39.2
C09p19340 Brassica napus HOM05D000214 ORTHO05D028072 1.8e-18 98.2 73 58.9
CARHR129000 Cardamine hirsuta HOM05D000214 ORTHO05D013285 1.8e-18 98.2 72 59.7
CARHR263110 Cardamine hirsuta HOM05D000214 ORTHO05D013285 3.2e-18 97.4 72 59.7
BolC7t43042H Brassica oleracea HOM05D000214 ORTHO05D000131 4.1e-18 97.1 57 78.9
AL4G34290 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 5.4e-18 96.7 371 29.1
BcaB03g11600 Brassica carinata HOM05D000214 ORTHO05D000131 5.4e-18 96.7 73 57.5
CARHR032440 Cardamine hirsuta HOM05D000214 ORTHO05D000131 7.0e-18 96.3 69 62.3
AL5G13790 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 9.2e-18 95.9 176 40.9
BolC6t37380H Brassica oleracea HOM05D000214 ORTHO05D000131 1.6e-17 95.1 61 73.8
CARHR052510 Cardamine hirsuta HOM05D000214 ORTHO05D000131 2.7e-17 94.4 75 57.3
BraA09t38661Z Brassica rapa HOM05D007309 ORTHO05D010099 4.6e-17 93.6 192 34.4
CARHR060220 Cardamine hirsuta HOM05D000214 ORTHO05D000131 1.0e-16 92.4 68 63.2
BolC2t09138H Brassica oleracea HOM05D000214 ORTHO05D000131 2.3e-16 91.3 55 78.2
CARHR221620 Cardamine hirsuta HOM05D000214 ORTHO05D000131 2.3e-16 91.3 68 58.8
A04p04180 Brassica napus HOM05D010965 ORTHO05D024278 8.6e-16 89.4 365 25.2
C04p58600 Brassica napus HOM05D007309 ORTHO05D010099 1.5e-15 88.6 166 35.5
Sp5g15613 Schrenkiella parvula HOM05D000214 ORTHO05D000131 1.5e-15 88.6 72 54.2
AL4G19150 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 4.3e-15 87.0 176 37.5
BolC4t27378H Brassica oleracea HOM05D007309 ORTHO05D010099 7.3e-15 86.3 166 35.5
BraA04t16224Z Brassica rapa HOM05D010965 ORTHO05D016023 1.2e-14 85.5 348 25.9
BcaB05g21784 Brassica carinata HOM05D000214 ORTHO05D000131 1.6e-14 85.1 73 54.8
BolC2t06144H Brassica oleracea HOM05D007309 ORTHO05D027345 4.7e-14 83.6 80 51.2
BolC3t17509H Brassica oleracea HOM05D001696 ORTHO05D040189 4.7e-14 83.6 46 84.8
CARHR156020 Cardamine hirsuta HOM05D000214 ORTHO05D000131 1.0e-13 82.4 59 62.7
AL9U11090 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 1.4e-13 82.0 163 38.0
CARHR150730 Cardamine hirsuta HOM05D000214 ORTHO05D000131 1.4e-13 82.0 68 52.9
C02p01450 Brassica napus HOM05D007309 ORTHO05D010099 1.8e-13 81.6 138 40.6
Thhalv10014870m.g Eutrema salsugineum HOM05D007309 ORTHO05D014840 5.2e-13 80.1 168 33.9
BcaC03g12971 Brassica carinata HOM05D007309 ORTHO05D010099 6.8e-13 79.7 130 38.5
A05p24100 Brassica napus HOM05D000075 ORTHO05D014840 6.8e-13 79.7 164 34.8
BcaB02g08395 Brassica carinata HOM05D010965 ORTHO05D016023 8.9e-13 79.3 345 26.1
A04p22450 Brassica napus HOM05D000075 ORTHO05D014840 1.5e-12 78.6 166 31.9
A04p05130 Brassica napus HOM05D010965 ORTHO05D016023 2.0e-12 78.2 255 27.5
BcaB08g35779 Brassica carinata HOM05D000214 ORTHO05D000131 2.6e-12 77.8 61 65.6
BolC4t25347H Brassica oleracea HOM05D010965 ORTHO05D016023 7.5e-12 76.3 353 23.8
BraA05t21290Z Brassica rapa HOM05D000075 ORTHO05D014840 7.5e-12 76.3 164 34.1
BcaC02g09040 Brassica carinata HOM05D010965 ORTHO05D016023 2.2e-11 74.7 352 23.3
C04p37700 Brassica napus HOM05D010965 ORTHO05D016023 6.4e-11 73.2 308 25.0
AL4G34570 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 8.3e-11 72.8 167 33.5
BcaC02g08085 Brassica carinata HOM05D000075 ORTHO05D014840 1.4e-10 72.0 97 43.3
BolC4t24671H Brassica oleracea HOM05D000405 ORTHO05D000974 2.4e-10 71.2 54 55.6
C07p13270 Brassica napus HOM05D023794 ORTHO05D028264 5.4e-10 70.1 185 29.2
AL4G33400 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 2.7e-09 67.8 351 24.5
BolC3t15958H Brassica oleracea HOM05D000214 ORTHO05D000131 2.7e-09 67.8 73 45.2
BolC3t15909H Brassica oleracea HOM05D000214 ORTHO05D000131 6.0e-09 66.6 51 62.7
BolC4t28446H Brassica oleracea HOM05D036964 ORTHO05D033459 6.0e-09 66.6 51 58.8
CARHR216040 Cardamine hirsuta HOM05D000214 ORTHO05D000131 1.0e-08 65.9 50 60.0
BolC8t50968H Brassica oleracea HOM05D000214 ORTHO05D000131 1.3e-08 65.5 73 47.9
CARHR099640 Cardamine hirsuta HOM05D000214 ORTHO05D000131 1.3e-08 65.5 48 62.5
BolC3t12646H Brassica oleracea HOM05D000214 ORTHO05D041722 1.7e-08 65.1 73 46.6
A01p09740 Brassica napus HOM05D007309 ORTHO05D027345 3.0e-08 64.3 67 55.2
BraA01t00917Z Brassica rapa HOM05D007309 ORTHO05D027345 3.9e-08 63.9 71 52.1
Carub.0001s3469 Capsella rubella HOM05D001456 ORTHO05D010099 3.9e-08 63.9 156 30.1
BcaB02g08391 Brassica carinata HOM05D000018 ORTHO05D016023 8.6e-08 62.8 238 26.1
BcaB05g22427 Brassica carinata HOM05D007309 ORTHO05D093831 8.6e-08 62.8 125 36.8
BcaB08g35561 Brassica carinata HOM05D000214 ORTHO05D000131 1.5e-07 62.0 69 43.5
BolC6t36645H Brassica oleracea HOM05D000214 ORTHO05D000131 2.5e-07 61.2 74 41.9
TPR.G31250 Trifolium pratense HOM05D000214 ORTHO05D013285 2.5e-07 61.2 73 42.5
CARHR057030 Cardamine hirsuta HOM05D000214 ORTHO05D000131 7.3e-07 59.7 58 50.0
Medtr1g075047 Medicago truncatula HOM05D000214 ORTHO05D013285 7.3e-07 59.7 76 43.4
Sp5g15125 Schrenkiella parvula HOM05D000214 ORTHO05D000131 7.3e-07 59.7 47 55.3
BcaB06g28307 Brassica carinata HOM05D000075 ORTHO05D014840 9.5e-07 59.3 147 32.0
CARHR262640 Cardamine hirsuta HOM05D000214 ORTHO05D013285 9.5e-07 59.3 73 43.8
C03p38220 Brassica napus HOM05D007309 ORTHO05D032970 2.1e-06 58.2 99 41.4
BolC4t22989H Brassica oleracea HOM05D000214 ORTHO05D000131 2.8e-06 57.8 73 46.6
BolC6t39701H Brassica oleracea HOM05D007344 ORTHO05D041415 2.8e-06 57.8 42 57.1
BcaC09g51620 Brassica carinata HOM05D007309 ORTHO05D027345 3.6e-06 57.4 86 44.2
BraA01t03637Z Brassica rapa HOM05D012545 ORTHO05D013730 3.6e-06 57.4 142 31.7
TPR.G39998 Trifolium pratense HOM05D000214 ORTHO05D000131 3.6e-06 57.4 77 44.2
CARHR121710 Cardamine hirsuta HOM05D000214 ORTHO05D000131 4.7e-06 57.0 72 41.7
BcaNung03654 Brassica carinata HOM05D000214 ORTHO05D000131 6.2e-06 56.6 75 40.0
A01p35550 Brassica napus HOM05D012545 ORTHO05D013730 6.2e-06 56.6 142 33.1
A01p33450 Brassica napus HOM05D011241 ORTHO05D016779 8.1e-06 56.2 290 24.1


User provided reference genes

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