Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 2.2e-280 968.4 513 100.0
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 6.0e-278 960.3 513 99.0
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 2.0e-265 918.7 513 95.3
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.5e-241 839.3 524 85.7
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 4.2e-239 831.2 524 82.4
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 5.5e-239 830.9 524 84.4
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 5.5e-239 830.9 525 85.1
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 7.1e-239 830.5 524 81.1
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 3.0e-237 825.1 522 85.1
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 8.7e-237 823.5 524 81.7
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 1.5e-236 822.8 518 84.9
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 5.3e-234 814.3 522 84.1
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 5.3e-234 814.3 522 84.1
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 9.0e-234 813.5 538 82.3
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.6e-227 792.7 524 80.7
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 1.1e-223 780.0 504 85.5
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 3.8e-216 755.0 522 75.3
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 6.5e-192 674.5 519 67.4
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.7e-187 659.8 522 66.5
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 2.2e-187 659.4 522 66.5
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 6.3e-187 657.9 528 65.0
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 8.3e-187 657.5 529 65.6
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.1e-186 657.1 529 64.8
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 3.1e-186 655.6 528 64.8
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 9.1e-186 654.1 521 65.5
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 1.0e-184 650.6 523 65.0
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 2.9e-184 649.0 526 65.0
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 3.8e-184 648.7 522 64.9
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 5.0e-184 648.3 516 67.4
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 6.6e-184 647.9 528 65.0
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 6.6e-184 647.9 519 65.7
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 6.6e-184 647.9 519 65.7
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-183 647.1 521 64.7
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 2.5e-183 646.0 527 65.3
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 9.5e-183 644.0 537 63.3
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 9.5e-183 644.0 522 64.9
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 2.8e-182 642.5 543 63.0
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.7e-182 641.7 521 65.1
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 8.0e-182 641.0 543 63.2
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.3e-181 639.4 518 64.9
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 3.0e-181 639.0 539 63.6
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 8.9e-181 637.5 521 65.5
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 1.2e-180 637.1 525 65.0
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.2e-180 637.1 518 64.7
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 1.5e-180 636.7 524 64.5
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 2.0e-180 636.3 528 62.7
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 3.4e-180 635.6 516 64.9
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 3.4e-180 635.6 522 63.8
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.7e-180 634.8 532 63.7
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.3e-179 633.6 533 65.1
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.7e-179 633.3 514 64.8
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 2.2e-179 632.9 517 64.2
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 4.9e-179 631.7 522 63.6
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 6.4e-179 631.3 517 63.2
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 1.4e-178 630.2 524 62.0
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.4e-178 630.2 525 64.6
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.8e-178 629.8 534 64.2
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.2e-178 629.0 518 63.1
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 5.9e-177 624.8 535 62.2
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 5.9e-177 624.8 532 65.2
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.0e-176 624.0 475 68.2
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.0e-176 624.0 527 63.9
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 4.3e-175 618.6 532 65.4
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.2e-174 617.1 519 63.2
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 2.1e-174 616.3 592 56.9
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 3.6e-174 615.5 533 61.2
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 6.2e-174 614.8 452 71.2
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 2.3e-173 612.8 516 65.5
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 2.3e-173 612.8 532 62.0
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 3.1e-173 612.5 518 62.0
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 4.0e-173 612.1 434 70.7
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.2e-172 610.5 525 63.2
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 3.4e-172 609.0 535 61.7
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.3e-171 607.1 526 61.6
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 1.6e-169 600.1 482 69.1
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 4.6e-169 598.6 548 58.6
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 7.8e-169 597.8 434 71.0
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 3.3e-167 592.4 493 61.7
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 3.3e-167 592.4 434 68.7
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 2.8e-166 589.3 527 58.1
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 8.1e-166 587.8 524 62.4
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 2.4e-162 576.2 525 60.0
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 4.1e-162 575.5 531 59.5
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.2e-161 573.9 521 59.3
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 1.2e-161 573.9 483 60.9
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.9e-159 566.6 453 62.3
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 4.3e-159 565.5 405 70.6
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.8e-158 562.8 517 63.1
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 1.6e-153 547.0 468 64.5
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.3e-152 543.9 534 59.4
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.1e-151 540.8 403 67.7
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 7.3e-151 538.1 411 65.5
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.8e-149 533.5 469 61.6
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 6.8e-149 531.6 393 67.2
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 5.8e-148 528.5 392 66.8
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.7e-147 526.9 806 41.6
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 5.4e-146 521.9 450 63.8
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 6.6e-144 515.0 433 63.0
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 9.6e-143 511.1 605 51.6
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 2.1e-142 510.0 529 55.0
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.9e-138 496.9 476 58.0
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 5.6e-135 485.3 548 50.9
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 6.2e-134 481.9 409 64.1
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 3.1e-133 479.6 405 62.7
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 2.4e-130 469.9 351 69.8
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 7.1e-130 468.4 452 55.1
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.1e-129 466.8 453 58.1
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 1.9e-127 460.3 450 53.3
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 3.8e-123 446.0 543 48.8
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 3.5e-121 439.5 439 52.8
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.2e-113 414.5 449 50.3
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 4.6e-113 412.5 491 46.4
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 3.3e-111 406.4 555 44.9
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.3e-107 394.4 379 60.4
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 5.0e-107 392.5 452 51.3
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 2.7e-84 317.0 439 41.2
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 1.1e-82 311.6 437 41.6
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 2.7e-81 307.0 214 71.0
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 4.4e-79 299.7 280 58.9
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 6.3e-78 295.8 159 96.2
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.8e-77 294.3 402 46.5
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 1.2e-76 291.6 297 51.9
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 3.5e-76 290.0 415 40.2
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 3.5e-76 290.0 365 49.9
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 8.6e-59 232.3 229 59.0
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 1.3e-51 208.4 187 61.5
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 3.6e-49 200.3 265 43.8
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.2e-45 187.2 249 44.6
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 2.7e-44 184.1 245 44.1
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.2e-40 169.9 158 55.7
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 2.9e-38 164.1 251 45.4
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 7.1e-37 159.5 139 66.2
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-36 158.7 169 55.0
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 3.5e-36 157.1 168 55.4
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 7.8e-36 156.0 236 44.5
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.7e-35 154.8 116 60.3
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.1e-35 153.3 163 56.4
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.9e-34 151.4 241 42.3
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.3e-34 150.2 161 55.9
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.3e-34 150.2 241 41.5
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 5.6e-34 149.8 164 56.7
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 7.3e-34 149.4 131 58.8
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 1.4e-32 145.2 100 66.0
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 2.6e-31 141.0 97 68.0
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 4.6e-28 130.2 116 57.8
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.6e-25 121.7 96 62.5
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.8e-24 118.2 140 47.9
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 1.3e-22 112.1 128 53.1
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 1.7e-22 111.7 241 34.9
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 6.4e-22 109.8 79 68.4
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 2.1e-20 104.8 124 53.2
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 6.0e-20 103.2 227 33.9
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 2.3e-19 101.3 227 32.6
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 1.4e-16 92.0 128 46.9
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 4.0e-16 90.5 94 46.8
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 1.3e-14 85.5 132 34.1
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 4.9e-14 83.6 123 50.4
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 3.2e-13 80.9 74 54.1
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 2.7e-12 77.8 63 58.7
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.9e-11 73.9 84 44.0
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 3.3e-10 70.9 38 89.5
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 3.3e-10 70.9 43 90.7
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 3.3e-10 70.9 38 89.5
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 3.3e-10 70.9 38 89.5
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 3.3e-10 70.9 38 89.5
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 2.8e-09 67.8 45 77.8
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 2.8e-09 67.8 45 77.8
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 2.8e-09 67.8 45 77.8
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 2.0e-07 61.6 105 38.1


User provided reference genes

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