Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 2.7e-291 1004.6 502 100.0
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 8.7e-290 999.6 502 99.6
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 2.2e-277 958.4 504 95.6
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 3.0e-274 948.0 502 95.0
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 3.0e-274 948.0 502 95.0
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 9.6e-273 943.0 503 94.6
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 6.9e-271 936.8 502 93.8
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 9.0e-271 936.4 503 94.0
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 9.0e-271 936.4 503 94.0
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 5.9e-270 933.7 502 93.4
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 7.6e-270 933.3 500 93.8
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.1e-267 925.2 510 91.8
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 3.6e-267 924.5 502 93.2
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 1.3e-266 922.5 502 93.0
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.1e-265 919.5 502 92.8
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 1.1e-265 919.5 502 92.8
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 2.4e-263 911.8 502 92.0
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 5.3e-263 910.6 502 91.6
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 3.4e-262 907.9 502 91.2
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 7.7e-262 906.7 502 91.8
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 9.7e-257 889.8 445 99.6
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.8e-255 885.6 499 88.2
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.7e-253 879.0 476 93.5
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 9.1e-247 856.7 509 84.5
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.7e-245 852.4 497 87.7
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 5.7e-233 810.8 501 81.8
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 3.8e-221 771.5 511 75.3
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 5.0e-221 771.2 505 75.8
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 1.1e-220 770.0 506 76.7
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 7.3e-220 767.3 511 74.8
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 4.0e-218 761.5 511 74.4
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 4.0e-218 761.5 511 74.6
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 5.2e-218 761.1 502 76.1
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 5.2e-218 761.1 505 75.0
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 3.4e-217 758.4 507 75.0
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 2.2e-216 755.7 513 73.5
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 2.2e-216 755.7 510 72.7
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 2.2e-216 755.7 509 74.1
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 6.4e-216 754.2 509 74.1
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 8.3e-216 753.8 511 73.6
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 8.3e-216 753.8 509 74.1
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.4e-215 753.1 505 74.3
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 3.2e-215 751.9 510 72.0
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 1.6e-214 749.6 504 73.6
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 2.3e-213 745.7 515 72.0
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 5.0e-213 744.6 509 73.7
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 5.6e-212 741.1 508 72.2
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 7.3e-212 740.7 509 71.5
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.8e-210 736.1 512 72.9
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 2.3e-210 735.7 511 70.6
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.0e-210 734.9 512 71.9
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 6.8e-210 734.2 508 72.2
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 6.8e-210 734.2 511 71.8
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 8.9e-210 733.8 506 72.5
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 1.5e-209 733.0 505 71.7
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 1.5e-209 733.0 507 71.0
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.0e-209 732.6 510 73.1
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.7e-208 729.6 511 69.7
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 1.1e-207 726.9 515 70.1
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 4.6e-206 721.5 506 70.9
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.3e-205 719.2 513 70.0
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 3.0e-205 718.8 504 70.8
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 1.1e-204 716.8 512 69.7
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.5e-204 715.7 549 66.1
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 3.3e-204 715.3 507 70.4
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 7.3e-204 714.1 515 69.1
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.2e-203 713.4 510 70.2
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.8e-203 712.2 510 70.0
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 3.6e-203 711.8 511 70.1
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 4.7e-203 711.4 514 69.6
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 8.1e-203 710.7 513 69.2
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 8.1e-203 710.7 510 70.6
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.1e-203 710.7 493 72.0
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.8e-202 709.5 478 73.4
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 2.0e-201 706.1 514 67.3
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 9.9e-201 703.7 549 65.4
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 2.2e-200 702.6 549 65.9
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.9e-199 699.5 509 70.3
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 7.1e-199 697.6 513 68.4
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 2.7e-198 695.7 513 67.8
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 3.5e-198 695.3 473 72.9
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.0e-198 694.5 509 69.9
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.0e-197 693.7 511 67.5
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 1.0e-197 693.7 474 73.2
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 2.3e-197 692.6 474 72.4
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 3.0e-197 692.2 500 70.0
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 6.6e-197 691.0 514 67.5
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.6e-197 691.0 499 69.9
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.1e-196 690.3 499 69.9
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 9.5e-196 687.2 514 67.3
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.8e-194 682.9 506 66.8
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 8.9e-194 680.6 506 68.6
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 2.6e-193 679.1 510 67.1
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.6e-193 679.1 602 59.8
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 3.4e-193 678.7 514 67.1
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 2.9e-192 675.6 503 67.2
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 2.4e-191 672.5 527 63.8
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 4.1e-191 671.8 507 66.3
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.5e-190 668.7 513 66.9
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.7e-189 666.4 509 68.4
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 3.0e-189 665.6 461 71.1
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.9e-189 665.2 509 68.2
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 1.5e-188 663.3 453 74.2
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 3.6e-187 658.7 567 61.4
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.4e-185 652.1 535 65.0
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 2.2e-184 649.4 506 64.6
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 2.2e-184 649.4 447 72.5
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 4.9e-184 648.3 583 58.5
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 4.9e-184 648.3 496 64.7
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.6e-182 643.3 507 65.7
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 3.5e-182 642.1 505 63.6
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.3e-181 640.2 506 65.4
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 5.1e-181 638.3 497 65.4
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 8.7e-181 637.5 507 62.9
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 4.3e-180 635.2 529 62.8
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 5.6e-180 634.8 508 65.2
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.4e-178 630.2 529 63.3
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 6.9e-178 627.9 509 62.3
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 1.4e-175 620.2 515 63.3
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 7.9e-174 614.4 511 61.4
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.3e-173 613.6 506 62.3
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 2.0e-169 599.7 473 64.5
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 7.1e-159 564.7 405 69.4
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 4.6e-158 562.0 400 69.5
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 5.7e-156 555.1 541 53.8
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 1.7e-147 526.9 533 51.8
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 3.1e-146 522.7 493 58.8
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 1.5e-145 520.4 665 47.2
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 1.6e-142 510.4 416 61.1
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.6e-134 483.8 454 58.8
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 4.8e-131 472.2 439 57.9
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 2.6e-129 466.5 339 68.4
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 5.2e-117 425.6 300 73.3
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 7.7e-113 411.8 274 74.8
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 2.3e-101 373.6 280 67.5
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 8.9e-85 318.5 244 66.8
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.9e-82 310.8 211 69.2
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 3.5e-81 306.6 251 61.0
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 2.6e-76 290.4 263 57.4
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 3.0e-72 276.9 497 38.0
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 3.4e-68 263.5 214 62.6
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 9.9e-60 235.3 559 31.3
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.1e-53 215.3 390 35.1
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 9.3e-42 175.6 175 53.7
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 1.0e-40 172.2 135 63.0
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 4.8e-38 163.3 106 76.4
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 7.2e-34 149.4 184 41.8
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.6e-33 146.7 122 66.4
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.8e-30 136.7 246 39.4
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.4e-29 135.2 246 39.0
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 1.3e-27 128.6 68 86.8
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 2.5e-26 124.4 113 50.4
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 9.7e-23 112.5 63 85.7
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 2.7e-17 94.4 183 28.4
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 4.5e-12 77.0 76 56.6
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 7.7e-12 76.3 114 43.0
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.5e-10 72.0 76 52.6
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 1.6e-09 68.6 80 48.8
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 1.8e-08 65.1 254 26.0
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.8e-08 65.1 110 35.5
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.2e-08 63.5 105 41.9
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 1.2e-07 62.4 127 29.9
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.2e-07 62.4 36 80.6
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.4e-07 60.8 36 75.0


User provided reference genes

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