Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p01030 Brassica napus HOM05D006544 ORTHO05D008757 9.4e-127 456.8 226 100.0
BolC2t06093H Brassica oleracea HOM05D006544 ORTHO05D008757 1.4e-125 453.0 226 98.7
BcaC03g13011 Brassica carinata HOM05D006544 ORTHO05D008757 5.0e-120 434.5 219 98.6
BcaB05g21832 Brassica carinata HOM05D006544 ORTHO05D008757 3.4e-108 395.2 225 88.0
BraA02t04758Z Brassica rapa HOM05D006544 ORTHO05D008757 3.2e-106 388.7 225 88.0
Sp6g39380 Schrenkiella parvula HOM05D006544 ORTHO05D008757 1.5e-103 379.8 223 88.3
AL8G27480 Arabidopsis lyrata HOM05D006544 ORTHO05D008757 5.4e-98 361.3 223 83.9
Thhalv10014610m.g Eutrema salsugineum HOM05D006544 ORTHO05D008757 1.6e-97 359.8 221 85.1
Carub.0008s1316 Capsella rubella HOM05D006544 ORTHO05D008757 3.5e-97 358.6 222 84.2
AT5G52970 Arabidopsis thaliana HOM05D006544 ORTHO05D008757 6.0e-97 357.8 224 83.5
CARHR265950 Cardamine hirsuta HOM05D006544 ORTHO05D008757 4.4e-92 341.7 225 79.6
Aa31LG1G21780 Aethionema arabicum HOM05D006544 ORTHO05D008757 9.2e-90 334.0 223 79.8
THA.LOC104816347 Tarenaya hassleriana HOM05D006544 ORTHO05D008757 3.9e-88 328.6 214 77.6
Duzib093G0756 Durio zibethinus HOM05D006544 ORTHO05D008757 5.6e-87 324.7 225 74.2
Potri.016G092300 Populus trichocarpa HOM05D006544 ORTHO05D008757 2.1e-86 322.8 182 88.5
Thecc.05G065700 Theobroma cacao HOM05D006544 ORTHO05D008757 1.4e-85 320.1 225 74.7
Ciclev10012670m.g Citrus clementina HOM05D006544 ORTHO05D008757 5.2e-85 318.2 216 75.0
RcHm_v2.0_Chr3g0470171 Rosa chinensis HOM05D006544 ORTHO05D008757 1.2e-84 317.0 210 76.2
PSO339G0933 Papaver somniferum HOM05D006544 ORTHO05D008757 3.4e-84 315.5 216 72.2
ClCG04G009280 Citrullus lanatus HOM05D006544 ORTHO05D008757 4.4e-84 315.1 215 75.8
MD12G1113500 Malus domestica HOM05D006544 ORTHO05D008757 5.8e-84 314.7 187 82.9
Dinv37314 Davidia involucrata HOM05D006544 ORTHO05D008757 9.9e-84 313.9 218 72.9
TWI74G1602 Tripterygium wilfordii HOM05D006544 ORTHO05D008757 9.9e-84 313.9 187 82.9
Sed0018427 Sechium edule HOM05D006544 ORTHO05D008757 1.3e-83 313.5 205 77.6
Gohir.A09G147100 Gossypium hirsutum HOM05D006544 ORTHO05D008757 1.7e-83 313.2 215 74.9
HanXRQChr13g0401051 Helianthus annuus HOM05D006544 ORTHO05D008757 1.7e-83 313.2 188 83.5
TAR636G3123 Trochodendron aralioides HOM05D006544 ORTHO05D008757 2.9e-83 312.4 222 73.4
CsaV3_6G039870 Cucumis sativus L. HOM05D006544 ORTHO05D008757 4.9e-83 311.6 215 74.9
PGSC0003DMG400010472 Solanum tuberosum HOM05D006544 ORTHO05D008757 1.4e-82 310.1 179 86.6
FvH4_6g16320 Fragaria vesca HOM05D006544 ORTHO05D008757 4.2e-82 308.5 182 84.1
QL07p043583 Quercus lobata HOM05D006544 ORTHO05D008757 9.3e-82 307.4 212 76.4
GSVIVG01025731001 Vitis vinifera HOM05D006544 ORTHO05D008757 1.6e-81 306.6 190 81.1
Actinidia28904 Actinidia chinensis HOM05D006544 ORTHO05D008757 2.1e-81 306.2 181 84.0
CiPaw.09G172700 Carya illinoinensis HOM05D006544 ORTHO05D008757 2.1e-81 306.2 217 72.8
Gohir.D09G142700 Gossypium hirsutum HOM05D006544 ORTHO05D008757 2.1e-81 306.2 215 73.0
Solyc10g084040.2 Solanum lycopersicum HOM05D006544 ORTHO05D008757 2.1e-81 306.2 179 85.5
Sopen10g033470 Solanum pennellii HOM05D006544 ORTHO05D008757 2.1e-81 306.2 179 85.5
PGR004G0128 Punica granatum HOM05D006544 ORTHO05D008757 2.7e-81 305.8 204 74.0
Lj5g0006333 Lotus japonicus HOM05D006544 ORTHO05D008757 3.5e-81 305.4 209 73.2
MELO3C024463.2 Cucumis melo HOM05D006544 ORTHO05D008757 4.6e-81 305.1 213 73.7
ECA233G4064 Erigeron canadensis HOM05D006544 ORTHO05D008757 6.0e-81 304.7 187 81.3
Lsat_1_v5_gn_6_25121 Lactuca sativa HOM05D006544 ORTHO05D008757 6.0e-81 304.7 188 80.9
Gorai.006G164200 Gossypium raimondii HOM05D006544 ORTHO05D008757 7.8e-81 304.3 220 72.3
CAN.G1169.17 Capsicum annuum HOM05D006544 ORTHO05D008757 1.0e-80 303.9 179 84.4
Glyma.10G056700 Glycine max HOM05D006544 ORTHO05D008757 1.0e-80 303.9 174 85.1
MBI18_g04983_MAGBIO Magnolia biondii HOM05D006544 ORTHO05D008757 1.0e-80 303.9 182 81.9
FAN05G5519 Fragaria x ananassa HOM05D006544 ORTHO05D008757 1.3e-80 303.5 191 80.6
Manes.09G066600 Manihot esculenta HOM05D006544 ORTHO05D008757 1.7e-80 303.1 226 70.4
FAN09G3810 Fragaria x ananassa HOM05D006544 ORTHO05D008757 2.3e-80 302.8 225 71.1
DCAR_020819 Daucus carota HOM05D006544 ORTHO05D008757 3.0e-80 302.4 192 79.7
Eucgr.A01683 Eucalyptus grandis HOM05D006544 ORTHO05D008757 3.0e-80 302.4 188 80.9
Nitab4.5_0000063g0030 Nicotiana tabacum HOM05D006544 ORTHO05D008757 3.0e-80 302.4 179 84.4
Lalb_Chr06g0171711 Lupinus albus HOM05D006544 ORTHO05D008757 3.9e-80 302.0 189 79.9
PSO801G0526 Papaver somniferum HOM05D006544 ORTHO05D008757 1.1e-79 300.4 181 81.2
Cfa017605 Carpinus fangiana HOM05D006544 ORTHO05D008757 1.5e-79 300.1 221 71.5
Psat6g072960 Pisum sativum HOM05D006544 ORTHO05D008757 1.9e-79 299.7 222 69.8
SGA_v2.0_scaffold224G42946 Striga asiatica HOM05D006544 ORTHO05D008757 3.3e-79 298.9 188 79.8
arahy.Tifrunner.gnm1.ann1.4P9CL0 Arachis hypogaea HOM05D006544 ORTHO05D008757 4.3e-79 298.5 192 76.6
arahy.Tifrunner.gnm1.ann1.8Z8BZM Arachis hypogaea HOM05D006544 ORTHO05D008757 4.3e-79 298.5 192 76.6
Nn2g11585 Nelumbo nucifera HOM05D006544 ORTHO05D008757 4.3e-79 298.5 182 83.0
Phvul.007G219800 Phaseolus vulgaris HOM05D006544 ORTHO05D008757 5.6e-79 298.1 203 74.9
Sc02g0001640 Simmondsia chinensis HOM05D006544 ORTHO05D008757 7.3e-79 297.7 191 78.5
Aqoxy2G01774 Aquilegia oxysepala HOM05D006544 ORTHO05D008757 1.6e-78 296.6 179 84.4
CDE09G0170 Ceratophyllum demersum HOM05D006544 ORTHO05D008757 2.1e-78 296.2 204 70.1
Medtr1g063350 Medicago truncatula HOM05D006544 ORTHO05D008757 3.6e-78 295.4 180 81.1
COL.COLO4_26969 Corchorus olitorius HOM05D006544 ORTHO05D008757 6.2e-78 294.7 242 66.9
Peaxi162Scf00311g00059 Petunia axillaris HOM05D006544 ORTHO05D008757 6.2e-78 294.7 212 71.2
VMungo0720G1694 Vigna mungo HOM05D006544 ORTHO05D008757 6.2e-78 294.7 173 83.8
SalBow5G2848 Salvia bowleyana HOM05D006544 ORTHO05D008757 1.1e-77 293.9 181 79.6
Ca_11495_v3 Cicer arietinum L. HOM05D006544 ORTHO05D008757 1.8e-77 293.1 222 68.5
TPR.G11258 Trifolium pratense HOM05D006544 ORTHO05D008757 1.8e-77 293.1 214 69.6
EL10Ac7g16625 Beta vulgaris HOM05D006544 ORTHO05D008757 3.1e-77 292.4 182 79.1
Oeu016983.1 Olea europaea HOM05D006544 ORTHO05D008757 4.0e-77 292.0 218 71.1
Cc06_g04210 Coffea canephora HOM05D006544 ORTHO05D008757 5.3e-77 291.6 181 79.6
CANSAT80G1747 Cannabis sativa HOM05D006544 ORTHO05D008757 2.6e-76 289.3 179 79.9
unitig_578.g16041 Utricularia gibba HOM05D006544 ORTHO05D008757 2.6e-76 289.3 181 77.9
Migut.L01701 Erythranthe guttata HOM05D006544 ORTHO05D008757 3.4e-76 288.9 175 81.7
ATR1093G019 Amborella trichopoda HOM05D006544 ORTHO05D008757 4.4e-76 288.5 181 79.6
Nitab4.5_0010279g0020 Nicotiana tabacum HOM05D006544 ORTHO05D008757 4.4e-76 288.5 206 73.3
MSTRG.10320 Avicennia marina HOM05D006544 ORTHO05D008757 7.6e-76 287.7 183 77.6
Sabra16G0097900 Salix brachista HOM05D006544 ORTHO05D008757 1.1e-74 283.9 323 54.2
HPP92_009890 Vanilla planifolia HOM05D006544 ORTHO05D008757 5.4e-74 281.6 192 75.0
FAN14G3080 Fragaria x ananassa HOM05D006544 ORTHO05D008757 4.6e-73 278.5 184 77.2
vmacro07290 Vaccinium macrocarpon HOM05D006544 ORTHO05D008757 1.3e-72 276.9 163 84.0
AUR62042496 Chenopodium quinoa HOM05D006544 ORTHO05D008757 3.9e-72 275.4 228 65.8
Lj2A122G33 Lonicera japonica HOM05D006544 ORTHO05D008757 1.5e-71 273.5 156 85.3
AUR62040358 Chenopodium quinoa HOM05D006544 ORTHO05D008757 2.1e-70 269.6 172 80.2
Prupe.6G232400 Prunus persica HOM05D006544 ORTHO05D008757 4.8e-70 268.5 159 84.3
Ah.15g092510 Amaranthus hybridus HOM05D006544 ORTHO05D008757 1.4e-69 266.9 156 83.3
SEGI_38453 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 4.0e-69 265.4 182 72.0
Zm00001eb088350 Zea mays HOM05D006544 ORTHO05D008757 2.0e-68 263.1 170 76.5
Mapoly0064s0090 Marchantia polymorpha HOM05D006544 ORTHO05D008757 5.1e-64 248.4 172 69.8
Pp3c13_11800 Physcomitrium patens HOM05D006544 ORTHO05D008757 8.7e-64 247.7 168 73.2
Rhsim03G0092100 Rhododendron simsii HOM05D006544 ORTHO05D008757 9.6e-63 244.2 237 57.4
SMO118G0079 Selaginella moellendorffii HOM05D006544 ORTHO05D008757 4.0e-61 238.8 146 76.7
AagrBONN_evm.TU.Sc2ySwM_228.4577 Anthoceros agrestis HOM05D006544 ORTHO05D008757 9.3e-58 227.6 157 73.9
Cre15.g636050 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D008757 1.0e-56 224.2 164 68.9
Cpa.g.sc54.75 Carica papaya HOM05D006544 ORTHO05D008757 5.1e-56 221.9 174 67.2
CBR_g11899 Chara braunii HOM05D006544 ORTHO05D008757 1.3e-54 217.2 175 61.7
SEGI_20985 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 4.1e-53 212.2 121 81.0
MCO09G250 Micromonas commoda HOM05D006544 ORTHO05D008757 2.3e-48 196.4 188 53.7
AagrBONN_evm.TU.Sc2ySwM_344.816 Anthoceros agrestis HOM05D006544 ORTHO05D008757 3.0e-48 196.1 121 73.6
PRCOL_00002491 Prasinoderma coloniale HOM05D006544 ORTHO05D008757 6.7e-48 194.9 181 56.9
Os07g0534000 Oryza sativa ssp. japonica HOM05D006544 ORTHO05D008757 3.0e-40 169.5 119 68.1
Cpa.g.sc4277.1 Carica papaya HOM05D006544 ORTHO05D008757 6.7e-40 168.3 116 75.0
Cpa.g.sc54.73 Carica papaya HOM05D006544 ORTHO05D008757 6.7e-40 168.3 116 75.0
Lj5g0024591 Lotus japonicus HOM05D006544 ORTHO05D008757 5.7e-39 165.2 95 81.1
CSS0000889 Camellia sinensis var. sinensis HOM05D006544 ORTHO05D008757 7.4e-39 164.9 168 54.8
Medtr5g037320 Medicago truncatula HOM05D006544 ORTHO05D008757 5.9e-28 128.6 97 71.1
HPP92_009894 Vanilla planifolia HOM05D006544 ORTHO05D008757 3.6e-25 119.4 71 77.5
Hund20313 Selenicereus undatus HOM05D006544 ORTHO05D008757 2.6e-23 113.2 73 79.5
AagrBONN_evm.TU.Sc2ySwM_368.258 Anthoceros agrestis HOM05D006544 ORTHO05D021234 9.4e-18 94.7 148 35.1
CBR_g20266 Chara braunii HOM05D006544 ORTHO05D021234 6.1e-17 92.0 166 33.7
Nn2g13777 Nelumbo nucifera HOM05D006544 ORTHO05D008757 4.4e-15 85.9 63 69.8
SalBow5G0971 Salvia bowleyana HOM05D008540 ORTHO05D009454 3.7e-14 82.8 48 77.1
Cpa.g.sc54.74 Carica papaya HOM05D006544 ORTHO05D008757 1.1e-13 81.3 102 50.0
HPP92_009893 Vanilla planifolia HOM05D006544 ORTHO05D008757 3.1e-13 79.7 72 65.3
SEGI_36386 Sequoiadendron giganteum HOM05D006544 ORTHO05D021234 5.4e-13 79.0 130 33.1
MCO12G278 Micromonas commoda HOM05D006544 ORTHO05D021234 1.2e-07 61.2 124 29.8
Cre03.g154600 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D021234 3.4e-07 59.7 162 25.3


User provided reference genes

Program Settings