Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p00820 Brassica napus HOM05D020236 ORTHO05D018443 2.4e-122 442.2 222 100.0
BcaC03g13027 Brassica carinata HOM05D020236 ORTHO05D018443 2.1e-118 429.1 222 96.4
BolC2t06080H Brassica oleracea HOM05D020236 ORTHO05D018443 2.1e-118 429.1 222 96.4
BolC1t02684H Brassica oleracea HOM05D020236 ORTHO05D018443 7.2e-63 244.6 222 59.0
BcaC09g50246 Brassica carinata HOM05D020236 ORTHO05D018443 1.4e-26 124.0 137 62.8
C09p72960 Brassica napus HOM05D021205 ORTHO05D031731 2.4e-26 123.2 172 41.9
BolC9t60032H Brassica oleracea HOM05D021205 ORTHO05D031731 2.4e-26 123.2 172 41.9
C09p73290 Brassica napus HOM05D004310 ORTHO05D040128 2.5e-23 113.2 178 40.4
C09p72920 Brassica napus HOM05D007779 ORTHO05D009863 4.7e-22 109.0 166 40.4
BolC9t60029H Brassica oleracea HOM05D004310 ORTHO05D040128 4.7e-22 109.0 166 40.4
CARHR172850 Cardamine hirsuta HOM05D021205 ORTHO05D018443 2.7e-17 93.2 189 32.3
BcaC06g32070 Brassica carinata HOM05D021205 ORTHO05D031731 8.7e-16 88.2 133 42.1
AL5G44670 Arabidopsis lyrata HOM05D021205 ORTHO05D018443 1.1e-15 87.8 213 29.1
Carub.0004s1897 Capsella rubella HOM05D007309 ORTHO05D015909 3.6e-14 82.8 135 33.3
AL4G33320 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 4.8e-14 82.4 160 30.6
CARHR167770 Cardamine hirsuta HOM05D001456 ORTHO05D011781 1.5e-12 77.4 172 29.7
CARHR172830 Cardamine hirsuta HOM05D001456 ORTHO05D011865 3.4e-12 76.3 133 34.6
A04p22460 Brassica napus HOM05D007309 ORTHO05D010099 4.5e-12 75.9 151 29.8
AL5G41570 Arabidopsis lyrata HOM05D001456 ORTHO05D011865 1.7e-11 73.9 154 34.4
Oeu044758.1 Olea europaea HOM05D001456 ORTHO05D002799 4.2e-10 69.3 182 26.9
Dinv30943 Davidia involucrata HOM05D001456 ORTHO05D002799 7.1e-10 68.6 185 27.6
AL5G39260 Arabidopsis lyrata HOM05D001456 ORTHO05D012451 2.1e-09 67.0 153 30.1
Carub.0001s3469 Capsella rubella HOM05D001456 ORTHO05D010099 2.1e-09 67.0 144 31.2
Thecc.01G323400 Theobroma cacao HOM05D001456 ORTHO05D002799 2.1e-09 67.0 165 29.7
BraA09t38661Z Brassica rapa HOM05D007309 ORTHO05D010099 2.7e-09 66.6 143 29.4
AL7G51710 Arabidopsis lyrata HOM05D001456 ORTHO05D012451 4.6e-09 65.9 165 26.7
BraA09t40691Z Brassica rapa HOM05D001456 ORTHO05D011781 6.0e-09 65.5 205 23.9
CANSAT25G0904 Cannabis sativa HOM05D001456 ORTHO05D002799 6.0e-09 65.5 166 27.7
Actinidia21350 Actinidia chinensis HOM05D001456 ORTHO05D002799 7.9e-09 65.1 175 28.0
Carub.0001s2895 Capsella rubella HOM05D011679 ORTHO05D012451 1.8e-08 63.9 193 27.5
AL1G58410 Arabidopsis lyrata HOM05D021205 ORTHO05D010099 2.3e-08 63.5 158 27.8
A09p52620 Brassica napus HOM05D001456 ORTHO05D011781 3.0e-08 63.2 204 24.0
BolC4t25347H Brassica oleracea HOM05D010965 ORTHO05D016023 3.0e-08 63.2 189 25.9
MSTRG.16424 Avicennia marina HOM05D001456 ORTHO05D002799 3.9e-08 62.8 166 27.7
BraA01t03637Z Brassica rapa HOM05D012545 ORTHO05D013730 3.9e-08 62.8 162 26.5
A01p35550 Brassica napus HOM05D012545 ORTHO05D013730 5.1e-08 62.4 162 26.5
Migut.N00970 Erythranthe guttata HOM05D001456 ORTHO05D002799 5.1e-08 62.4 166 28.9
AL5G39230 Arabidopsis lyrata HOM05D001456 ORTHO05D012451 6.7e-08 62.0 115 32.2
BraA04t16224Z Brassica rapa HOM05D010965 ORTHO05D016023 6.7e-08 62.0 188 25.5
AL1G58420 Arabidopsis lyrata HOM05D001456 ORTHO05D010099 8.7e-08 61.6 134 35.1
BcaB02g08393 Brassica carinata HOM05D010965 ORTHO05D016023 1.1e-07 61.2 182 25.8
Carub.0004s1446 Capsella rubella HOM05D007309 ORTHO05D015909 1.1e-07 61.2 141 27.7
Carub.0004s1451 Capsella rubella HOM05D007309 ORTHO05D015909 1.1e-07 61.2 141 27.7
BcaB02g08391 Brassica carinata HOM05D000018 ORTHO05D016023 1.5e-07 60.8 176 27.3
C04p37700 Brassica napus HOM05D010965 ORTHO05D016023 1.5e-07 60.8 184 24.5
BcaB02g08395 Brassica carinata HOM05D010965 ORTHO05D016023 1.9e-07 60.5 178 26.4
A04p05130 Brassica napus HOM05D010965 ORTHO05D016023 2.5e-07 60.1 181 25.4
C04p58600 Brassica napus HOM05D007309 ORTHO05D010099 4.3e-07 59.3 147 27.9
SGA_v2.0_scaffold5G02913 Striga asiatica HOM05D001456 ORTHO05D002799 5.6e-07 58.9 163 27.0
C02p00870 Brassica napus HOM05D020236 ORTHO05D018443 9.6e-07 58.2 35 74.3
BolC4t27378H Brassica oleracea HOM05D007309 ORTHO05D010099 1.3e-06 57.8 142 27.5
AL5G20610 Arabidopsis lyrata HOM05D001456 ORTHO05D019698 6.2e-06 55.5 165 23.0


User provided reference genes

Program Settings