Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 2.4e-87 325.5 165 100.0
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 2.3e-74 282.3 143 99.3
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 6.1e-67 257.7 143 93.0
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 2.7e-62 242.3 144 86.8
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 2.7e-62 242.3 144 86.8
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 1.0e-61 240.4 144 85.4
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 1.0e-61 240.4 144 85.4
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 1.7e-61 239.6 150 84.7
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 4.3e-60 235.0 147 83.7
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 4.7e-59 231.5 149 81.9
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 8.0e-59 230.7 149 81.2
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 1.0e-58 230.3 149 80.5
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 6.8e-58 227.6 149 80.5
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 1.5e-57 226.5 145 82.1
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 5.8e-57 224.6 159 76.7
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 3.2e-55 218.8 146 82.2
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 2.3e-53 212.6 144 76.4
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 4.7e-51 204.9 145 74.5
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 6.2e-51 204.5 149 70.5
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 6.2e-51 204.5 149 70.5
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 1.8e-50 203.0 148 70.9
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 4.0e-50 201.8 148 70.9
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 4.0e-50 201.8 148 70.9
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 1.2e-49 200.3 149 70.5
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 1.5e-49 199.9 149 69.1
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 7.5e-49 197.6 142 71.8
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 7.5e-49 197.6 149 69.8
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 7.5e-49 197.6 150 70.7
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 1.7e-48 196.4 149 69.1
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 1.7e-48 196.4 149 68.5
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 2.2e-48 196.1 145 71.0
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 2.9e-48 195.7 146 70.5
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 2.9e-48 195.7 145 71.0
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 4.9e-48 194.9 149 67.8
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 8.3e-48 194.1 149 66.4
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 1.1e-47 193.7 145 71.0
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 1.4e-47 193.4 149 66.4
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 1.9e-47 193.0 144 70.8
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 2.4e-47 192.6 145 69.7
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 2.4e-47 192.6 145 69.7
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 2.4e-47 192.6 144 68.8
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 2.4e-47 192.6 144 68.1
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 3.2e-47 192.2 145 68.3
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 4.1e-47 191.8 145 66.9
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 4.1e-47 191.8 145 69.0
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 5.4e-47 191.4 145 66.9
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 7.1e-47 191.0 149 67.1
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 9.2e-47 190.7 144 67.4
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 9.2e-47 190.7 148 67.6
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.2e-46 190.3 145 68.3
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 1.2e-46 190.3 146 67.8
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 1.6e-46 189.9 145 66.9
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 2.1e-46 189.5 149 68.5
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 2.1e-46 189.5 148 64.9
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 2.7e-46 189.1 147 66.0
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 2.7e-46 189.1 149 66.4
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 3.5e-46 188.7 144 68.8
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 4.6e-46 188.3 149 64.4
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 4.6e-46 188.3 149 65.8
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 4.6e-46 188.3 144 68.1
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 6.0e-46 188.0 149 65.8
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 7.8e-46 187.6 149 63.1
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 1.0e-45 187.2 149 65.8
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 1.3e-45 186.8 149 65.8
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 1.7e-45 186.4 149 63.8
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 1.7e-45 186.4 144 67.4
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 2.3e-45 186.0 145 67.6
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 3.0e-45 185.7 144 68.1
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 3.0e-45 185.7 149 65.1
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 3.9e-45 185.3 149 63.1
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 3.9e-45 185.3 146 65.8
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 5.1e-45 184.9 149 64.4
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 8.6e-45 184.1 144 65.3
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 8.6e-45 184.1 147 66.7
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 1.1e-44 183.7 146 65.8
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 1.5e-44 183.3 149 62.4
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 1.5e-44 183.3 147 63.9
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 1.9e-44 183.0 147 65.3
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 1.9e-44 183.0 144 65.3
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 2.5e-44 182.6 144 67.4
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 2.5e-44 182.6 145 65.5
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 4.3e-44 181.8 150 65.3
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 4.3e-44 181.8 146 63.0
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 7.3e-44 181.0 147 64.6
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 9.5e-44 180.6 145 64.8
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 2.1e-43 179.5 185 56.2
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 2.8e-43 179.1 146 63.7
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 4.7e-43 178.3 158 60.8
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 1.8e-42 176.4 134 70.1
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 3.1e-42 175.6 134 69.4
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 4.0e-42 175.3 149 63.1
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 4.0e-42 175.3 149 63.1
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 4.0e-42 175.3 146 63.7
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 1.2e-41 173.7 134 69.4
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 1.5e-41 173.3 138 64.5
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 1.5e-41 173.3 149 61.7
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 1.5e-41 173.3 149 61.7
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 4.4e-41 171.8 145 60.0
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 1.7e-40 169.9 145 61.4
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 2.7e-38 162.5 195 50.3
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 6.6e-37 157.9 119 66.4
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 6.6e-37 157.9 119 66.4
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 5.6e-36 154.8 142 57.7
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 4.7e-35 151.8 129 63.6
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 2.4e-34 149.4 143 52.4
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 2.0e-33 146.4 114 63.2
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 3.4e-33 145.6 119 58.8
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 5.8e-33 144.8 119 58.8
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 5.8e-33 144.8 145 52.4
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 2.9e-32 142.5 115 60.0
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 2.4e-31 139.4 144 50.0
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 7.1e-31 137.9 109 62.4
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 2.1e-30 136.3 109 60.6
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 1.3e-29 133.7 149 52.3
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 1.7e-29 133.3 146 49.3
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 1.6e-27 126.7 102 61.8
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 1.6e-27 126.7 147 53.7
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 2.1e-27 126.3 104 68.3
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 3.6e-27 125.6 105 66.7
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.8e-27 125.2 184 42.9
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 4.0e-26 122.1 106 62.3
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 9.0e-26 120.9 147 51.7
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 1.2e-25 120.6 72 88.9
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 4.5e-25 118.6 104 63.5
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 1.3e-24 117.1 114 54.4
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 1.7e-24 116.7 116 58.6
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 7.1e-23 111.3 121 55.4
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 5.1e-21 105.1 71 77.5
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 6.7e-21 104.8 150 42.7
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 4.8e-19 98.6 140 47.1
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 6.9e-18 94.7 136 41.9
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 1.5e-17 93.6 78 57.7
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.6e-17 92.8 119 49.6
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 1.7e-16 90.1 162 37.7
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 2.9e-16 89.4 88 53.4
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 7.1e-15 84.7 166 33.7
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 1.5e-12 77.0 95 48.4
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 2.5e-12 76.3 67 49.3
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 2.1e-11 73.2 73 58.9
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 4.8e-11 72.0 149 36.2
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.0e-10 68.9 39 84.6
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 6.9e-10 68.2 143 35.0


User provided reference genes

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