Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 5.0e-102 374.4 183 100.0
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 6.6e-62 241.1 208 63.5
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 3.3e-61 238.8 208 63.0
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 3.3e-61 238.8 208 63.0
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 7.3e-61 237.7 208 63.0
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 1.2e-60 236.9 208 62.5
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 1.6e-60 236.5 208 63.0
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 2.8e-60 235.7 209 63.2
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 6.2e-60 234.6 209 62.7
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 6.2e-60 234.6 209 62.7
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 1.4e-59 233.4 209 62.2
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 8.9e-59 230.7 208 61.5
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 4.4e-58 228.4 209 61.7
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 4.4e-58 228.4 208 59.6
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 6.6e-54 214.5 208 56.7
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 6.6e-54 214.5 208 56.7
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 6.6e-54 214.5 208 57.7
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 1.1e-53 213.8 207 58.0
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 1.1e-53 213.8 208 57.7
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 1.5e-53 213.4 208 56.7
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 1.5e-53 213.4 208 56.7
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 1.9e-53 213.0 208 56.7
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 1.9e-53 213.0 208 56.7
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 1.9e-53 213.0 208 56.7
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 1.9e-53 213.0 209 56.5
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 2.5e-53 212.6 208 57.2
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.5e-53 212.6 208 57.2
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.5e-53 212.6 208 57.2
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.5e-53 212.6 208 57.2
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 2.5e-53 212.6 208 57.2
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 3.3e-53 212.2 208 56.2
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 4.3e-53 211.8 208 57.2
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 4.3e-53 211.8 208 56.2
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 7.3e-53 211.1 208 56.7
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 7.3e-53 211.1 208 56.7
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 7.3e-53 211.1 208 55.8
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 9.5e-53 210.7 208 56.7
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 1.2e-52 210.3 208 55.8
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 1.2e-52 210.3 208 56.7
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 2.8e-52 209.1 208 55.3
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 2.8e-52 209.1 208 55.8
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 3.6e-52 208.8 208 56.2
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 3.6e-52 208.8 208 55.8
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 3.6e-52 208.8 208 55.3
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 4.7e-52 208.4 208 55.3
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 4.7e-52 208.4 208 55.8
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 6.2e-52 208.0 208 55.8
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 8.1e-52 207.6 208 55.3
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 8.1e-52 207.6 208 55.8
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 1.1e-51 207.2 207 54.6
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 1.1e-51 207.2 208 54.8
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 1.4e-51 206.8 208 55.8
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 1.4e-51 206.8 208 55.8
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 1.4e-51 206.8 207 55.1
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 1.8e-51 206.5 209 55.5
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 1.8e-51 206.5 208 56.7
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 3.1e-51 205.7 208 55.3
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 3.1e-51 205.7 208 55.3
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 3.1e-51 205.7 208 55.3
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 3.1e-51 205.7 207 54.6
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 4.0e-51 205.3 208 55.3
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 4.0e-51 205.3 208 54.8
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 4.0e-51 205.3 208 56.2
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 6.8e-51 204.5 208 56.2
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 6.8e-51 204.5 184 61.4
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 6.8e-51 204.5 209 55.5
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 6.8e-51 204.5 207 56.0
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 6.8e-51 204.5 208 55.3
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 8.9e-51 204.1 208 54.8
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 8.9e-51 204.1 208 55.3
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 8.9e-51 204.1 208 55.3
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 1.2e-50 203.8 208 55.3
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 1.2e-50 203.8 207 54.1
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 1.2e-50 203.8 208 55.3
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 1.2e-50 203.8 207 54.1
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 2.6e-50 202.6 208 54.3
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 3.4e-50 202.2 208 53.8
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 4.4e-50 201.8 208 53.4
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 5.8e-50 201.4 208 53.8
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 1.3e-49 200.3 208 51.4
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 1.3e-49 200.3 208 54.3
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 1.7e-49 199.9 208 53.4
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 1.7e-49 199.9 207 54.1
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.7e-49 199.9 207 54.1
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 2.2e-49 199.5 208 54.3
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 2.2e-49 199.5 208 53.8
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 2.2e-49 199.5 208 53.8
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 2.2e-49 199.5 208 53.8
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 2.2e-49 199.5 208 52.9
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 2.9e-49 199.1 208 53.8
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 3.8e-49 198.7 208 53.4
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 8.4e-49 197.6 214 53.7
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 1.1e-48 197.2 208 53.4
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 1.1e-48 197.2 208 53.4
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 2.4e-48 196.1 208 54.3
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 2.4e-48 196.1 210 53.3
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 3.2e-48 195.7 207 54.1
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 4.1e-48 195.3 207 53.6
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 9.2e-48 194.1 207 52.2
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 6.0e-47 191.4 208 52.4
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 1.3e-46 190.3 207 52.7
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 1.3e-46 190.3 208 52.4
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 1.3e-46 190.3 208 51.9
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 3.0e-46 189.1 207 51.7
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 3.0e-46 189.1 207 51.7
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 9.6e-45 184.1 252 45.2
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 2.8e-44 182.6 196 53.1
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 8.1e-44 181.0 207 48.8
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 1.1e-43 180.6 208 48.6
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 1.4e-43 180.3 196 52.6
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 5.2e-43 178.3 189 54.5
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 1.2e-42 177.2 208 47.6
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 5.8e-42 174.9 210 51.0
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 1.7e-41 173.3 218 49.1
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 2.2e-41 172.9 192 51.0
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 2.4e-40 169.5 208 48.1
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 3.2e-40 169.1 197 49.7
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 1.6e-39 166.8 201 50.2
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 9.6e-37 157.5 195 51.3
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 2.8e-36 156.0 209 44.0
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 3.6e-36 155.6 182 48.9
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 4.8e-36 155.2 86 91.9
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 2.4e-35 152.9 85 91.8
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 7.6e-34 147.9 173 48.6
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.4e-32 143.7 177 49.2
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 4.2e-32 142.1 176 47.2
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 6.0e-31 138.3 144 54.2
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 6.0e-31 138.3 171 46.8
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 2.3e-30 136.3 127 62.2
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 1.6e-28 130.2 172 47.7
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 2.1e-28 129.8 217 38.2
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 7.6e-26 121.3 208 36.5
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 2.4e-24 116.3 78 78.2
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 7.9e-23 111.3 230 34.3
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 3.9e-22 109.0 216 33.3
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 8.7e-22 107.8 174 41.4
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 4.0e-19 99.0 60 81.7
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 1.2e-18 97.4 141 41.8
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 3.8e-17 92.4 63 77.8
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 4.9e-17 92.0 57 82.5
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.2e-15 87.4 84 58.3
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 1.9e-13 80.1 139 36.0
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 5.7e-13 78.6 127 37.8
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 2.2e-12 76.6 38 86.8
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 6.5e-09 65.1 85 45.9


User provided reference genes

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