Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 5.0e-174 614.4 319 100.0
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 4.4e-170 601.3 320 98.8
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.5e-162 576.2 326 91.7
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 5.5e-157 557.8 319 89.3
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 5.2e-155 551.2 319 88.1
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 1.5e-154 549.7 316 88.3
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 2.4e-152 542.3 316 87.7
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 3.2e-152 542.0 316 87.3
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 8.6e-150 533.9 313 87.5
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 3.3e-149 531.9 319 85.3
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 1.6e-148 529.6 315 86.0
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 6.8e-147 524.2 339 81.1
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 8.6e-142 507.3 319 82.4
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.1e-139 500.4 319 81.5
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.1e-133 480.3 330 75.8
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 6.0e-127 458.0 297 79.5
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.3e-118 430.3 311 69.8
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.1e-117 427.2 310 68.4
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.5e-117 426.8 310 68.7
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.5e-117 426.8 310 68.7
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 4.3e-117 425.2 309 68.9
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 1.2e-114 417.2 311 67.2
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 1.3e-113 413.7 315 67.0
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 2.1e-111 406.4 322 64.0
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 3.5e-111 405.6 317 64.0
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.7e-110 403.3 303 65.3
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 3.9e-110 402.1 303 65.3
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 5.1e-110 401.7 305 65.6
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 8.7e-110 401.0 310 64.8
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 8.7e-110 401.0 303 64.7
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.9e-109 399.8 312 64.4
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 3.3e-109 399.1 306 65.4
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 5.6e-109 398.3 304 66.1
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 5.6e-109 398.3 305 64.6
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 6.2e-108 394.8 309 64.7
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 6.2e-108 394.8 315 63.5
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.1e-107 394.0 306 65.4
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.1e-107 394.0 305 64.3
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 1.4e-107 393.7 304 64.1
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.4e-107 393.7 305 65.2
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.8e-107 393.3 305 64.9
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 5.3e-107 391.7 307 61.9
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 5.3e-107 391.7 304 64.8
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 6.9e-107 391.3 305 63.9
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 1.5e-106 390.2 310 62.6
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 2.6e-106 389.4 310 64.5
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 2.6e-106 389.4 306 65.0
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 3.4e-106 389.0 310 64.5
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 3.4e-106 389.0 310 63.9
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 4.5e-106 388.7 304 63.2
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 5.8e-106 388.3 307 61.9
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 7.6e-106 387.9 311 64.0
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 7.6e-106 387.9 312 64.4
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 7.6e-106 387.9 304 64.5
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.2e-105 386.3 310 61.9
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 2.2e-105 386.3 306 62.7
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.2e-105 386.3 306 63.7
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.9e-105 386.0 309 60.8
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 6.4e-105 384.8 310 61.6
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 1.1e-104 384.0 305 64.6
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 1.1e-104 384.0 304 64.1
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 1.4e-104 383.6 307 61.6
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.9e-104 383.3 321 62.0
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 3.2e-104 382.5 307 63.2
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 5.4e-104 381.7 308 62.3
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 7.1e-104 381.3 332 59.9
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.2e-103 380.6 307 63.5
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 2.7e-103 379.4 310 61.0
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 2.7e-103 379.4 315 61.6
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 2.7e-103 379.4 312 62.8
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 3.5e-103 379.0 311 61.4
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 3.5e-103 379.0 312 61.2
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 4.6e-103 378.6 307 62.5
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 2.3e-102 376.3 307 62.5
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 3.9e-102 375.6 297 63.0
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 3.9e-102 375.6 306 62.7
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 3.9e-102 375.6 334 60.2
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 5.1e-102 375.2 306 62.7
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 5.1e-102 375.2 264 69.7
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 6.7e-102 374.8 305 62.6
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 8.7e-102 374.4 306 60.8
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 8.7e-102 374.4 307 62.2
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 8.7e-102 374.4 310 61.3
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 1.1e-101 374.0 327 58.7
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.1e-101 374.0 308 61.0
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 3.3e-101 372.5 346 58.1
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 3.3e-101 372.5 321 59.8
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.6e-100 370.2 309 65.7
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.6e-100 370.2 317 58.4
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.1e-100 369.8 325 59.4
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 4.8e-100 368.6 263 68.8
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 6.2e-100 368.2 373 53.6
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.1e-99 365.9 342 56.4
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 4.0e-99 365.5 307 59.9
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 9.0e-99 364.4 307 62.5
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 9.0e-99 364.4 308 60.1
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 1.5e-98 363.6 307 60.6
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.3e-97 360.5 352 54.5
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.2e-97 359.8 306 62.4
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.9e-96 356.7 270 66.3
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 4.2e-96 355.5 264 66.3
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 5.5e-96 355.1 265 67.2
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 9.3e-96 354.4 264 65.9
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 2.3e-94 349.7 327 56.9
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 9.6e-93 344.4 287 62.4
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 2.1e-92 343.2 273 63.4
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 6.2e-92 341.7 311 56.3
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.1e-91 340.9 307 60.3
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.8e-90 335.1 307 57.3
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 7.6e-90 334.7 203 82.8
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.2e-89 333.2 317 56.5
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.5e-89 331.6 306 56.9
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 6.5e-89 331.6 251 65.7
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.5e-88 329.7 306 54.2
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 3.2e-88 329.3 174 97.7
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 9.3e-88 327.8 307 54.7
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.6e-87 327.0 185 91.4
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 4.6e-87 325.5 237 65.4
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 6.1e-87 325.1 307 54.4
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 1.1e-85 320.9 302 53.0
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 4.3e-85 318.9 324 53.4
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 3.7e-84 315.8 313 55.9
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 7.7e-82 308.1 314 51.6
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 2.5e-80 303.1 233 63.1
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.2e-76 290.0 257 57.2
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 8.2e-76 288.1 232 62.1
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 1.8e-75 287.0 226 65.0
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.5e-73 278.1 304 49.7
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.1e-69 267.7 309 47.9
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 4.8e-68 262.3 301 47.8
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 3.5e-66 256.1 441 37.9
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.4e-62 244.2 192 65.1
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 4.1e-59 232.6 311 44.4
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 7.0e-59 231.9 325 43.7
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.5e-58 229.6 267 49.8
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.3e-57 227.6 153 70.6
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.7e-55 219.9 205 57.6
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 1.4e-54 217.6 173 64.7
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 9.8e-53 211.5 221 49.3
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 2.2e-52 210.3 172 63.4
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 5.0e-49 199.1 290 40.0
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 7.2e-48 195.3 225 46.7
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 9.4e-48 194.9 213 50.7
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 8.0e-47 191.8 233 47.2
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 2.3e-46 190.3 147 63.3
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 6.8e-46 188.7 164 61.0
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 8.8e-46 188.3 132 70.5
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 4.4e-45 186.0 192 47.9
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.2e-44 183.7 173 56.1
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 6.3e-44 182.2 305 41.6
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 8.3e-44 181.8 140 63.6
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.5e-40 171.0 193 49.7
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 2.5e-40 170.2 137 62.0
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 2.6e-37 160.2 121 65.3
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.6e-37 160.2 149 57.0
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 3.7e-36 156.4 116 66.4
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 3.2e-35 153.3 166 46.4
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 1.4e-30 137.9 106 65.1
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.6e-29 133.7 176 44.9
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 4.1e-27 126.3 113 59.3
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.8e-22 110.9 134 47.0
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 1.8e-22 110.9 116 54.3
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.9e-17 93.2 126 41.3
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 9.5e-16 88.6 54 74.1
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 2.8e-15 87.0 81 55.6
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 4.7e-15 86.3 81 53.1
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.4e-11 73.9 45 77.8
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 7.1e-11 72.4 90 43.3
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 3.9e-09 66.6 80 43.8
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 6.6e-09 65.9 46 65.2
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 2.5e-08 63.9 62 53.2
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 9.6e-08 62.0 62 51.6


User provided reference genes

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