Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p00140 Brassica napus HOM05D004340 ORTHO05D006363 8.3e-91 337.0 171 100.0
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 5.3e-90 334.3 171 98.8
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 5.3e-90 334.3 171 98.8
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 1.5e-87 326.2 171 96.5
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 1.0e-85 320.1 171 97.1
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 7.0e-82 307.4 171 91.2
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 4.5e-81 304.7 171 90.6
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 2.8e-78 295.4 171 87.1
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 4.0e-77 291.6 171 87.7
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 3.4e-76 288.5 171 86.5
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 3.7e-75 285.0 172 86.0
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 1.0e-72 276.9 171 79.5
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 1.1e-71 273.5 176 79.5
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 2.1e-70 269.2 176 76.1
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 6.1e-70 267.7 176 75.6
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 6.1e-70 267.7 176 75.6
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 1.4e-69 266.5 176 76.1
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 2.3e-69 265.8 176 76.1
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 6.8e-69 264.2 176 75.0
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 2.0e-68 262.7 173 80.9
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 4.4e-68 261.5 176 73.3
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 4.4e-68 261.5 176 74.4
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 9.8e-68 260.4 176 73.3
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 9.8e-68 260.4 176 71.6
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 3.7e-67 258.5 176 73.3
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 4.9e-67 258.1 176 73.3
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 6.4e-67 257.7 176 72.7
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 8.3e-67 257.3 171 80.1
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.1e-66 256.9 176 71.0
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 1.4e-66 256.5 176 71.6
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 1.9e-66 256.1 171 80.1
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 1.9e-66 256.1 176 71.6
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 2.4e-66 255.8 174 73.6
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 3.2e-66 255.4 176 71.0
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 4.1e-66 255.0 176 70.5
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 4.1e-66 255.0 176 70.5
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 4.1e-66 255.0 176 70.5
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 5.4e-66 254.6 171 79.5
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 5.4e-66 254.6 175 71.4
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 5.4e-66 254.6 176 70.5
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 7.0e-66 254.2 176 70.5
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 7.0e-66 254.2 176 70.5
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 7.0e-66 254.2 171 79.5
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 7.0e-66 254.2 176 69.9
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 9.2e-66 253.8 176 69.3
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 1.2e-65 253.4 176 69.9
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 1.6e-65 253.1 176 71.0
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 1.6e-65 253.1 175 70.3
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 2.0e-65 252.7 176 69.9
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 4.6e-65 251.5 175 72.0
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 4.6e-65 251.5 176 70.5
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 4.6e-65 251.5 176 70.5
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 4.6e-65 251.5 176 71.0
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 6.0e-65 251.1 176 71.6
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 7.8e-65 250.8 176 70.5
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 2.3e-64 249.2 176 69.3
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 3.0e-64 248.8 175 69.7
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 3.0e-64 248.8 176 69.3
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 3.9e-64 248.4 176 69.3
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 3.9e-64 248.4 174 70.1
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 5.0e-64 248.1 176 68.2
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 5.0e-64 248.1 175 68.0
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 6.6e-64 247.7 176 69.3
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 1.1e-63 246.9 174 70.1
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 1.1e-63 246.9 176 68.8
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 1.1e-63 246.9 176 68.8
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 1.1e-63 246.9 176 70.5
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 1.5e-63 246.5 176 68.8
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 5.6e-63 244.6 176 68.2
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 5.6e-63 244.6 176 67.0
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 9.5e-63 243.8 176 68.2
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 9.5e-63 243.8 176 68.2
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 6.2e-62 241.1 176 68.2
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 8.0e-62 240.7 176 68.2
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 1.1e-61 240.4 175 68.6
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.4e-61 240.0 176 68.2
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 1.8e-61 239.6 176 67.0
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 2.3e-61 239.2 175 68.0
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 4.0e-61 238.4 172 66.3
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 5.2e-61 238.0 175 68.0
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 1.2e-60 236.9 176 67.0
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 1.2e-60 236.9 176 65.9
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 5.8e-60 234.6 172 66.9
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 9.8e-60 233.8 176 66.5
Prupe.1G191200 Prunus persica HOM05D004340 ORTHO05D006363 1.3e-59 233.4 176 66.5
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 3.7e-59 231.9 172 65.7
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 3.7e-59 231.9 175 66.3
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 6.4e-59 231.1 176 64.8
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 6.4e-59 231.1 176 66.5
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 1.9e-58 229.6 174 65.5
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 1.9e-58 229.6 172 63.4
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 3.2e-58 228.8 176 64.8
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 3.2e-58 228.8 176 64.8
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 4.1e-58 228.4 176 64.2
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.6e-57 226.5 172 64.0
Ca_30738_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.6e-57 226.5 172 64.0
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 2.7e-57 225.7 170 64.7
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 3.5e-57 225.3 167 65.3
HPP92_022008 Vanilla planifolia HOM05D004340 ORTHO05D006363 6.0e-57 224.6 170 64.1
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 7.8e-57 224.2 172 64.5
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 1.3e-56 223.4 176 63.1
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 1.5e-55 219.9 174 63.2
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 3.3e-55 218.8 156 69.2
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 1.2e-52 210.3 206 54.9
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 5.8e-52 208.0 171 59.6
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 2.4e-50 202.6 173 59.0
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 1.6e-49 199.9 176 59.7
TPR.G26175 Trifolium pratense HOM05D004340 ORTHO05D006363 2.7e-49 199.1 174 60.3
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 5.1e-48 194.9 169 56.8
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 6.2e-46 188.0 162 58.6
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 2.4e-45 186.0 136 66.9
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 5.8e-44 181.4 173 52.6
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 4.6e-41 171.8 173 50.9
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 8.7e-40 167.5 173 49.7
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 5.6e-39 164.9 173 52.0
Nn1g04521 Nelumbo nucifera HOM05D004340 ORTHO05D006363 6.2e-38 161.4 107 78.5
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 1.1e-37 160.6 176 46.6
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 6.9e-37 157.9 135 57.8
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.9e-34 149.8 201 43.8
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 4.3e-31 138.7 113 59.3
PRCOL_00002008 Prasinoderma coloniale HOM05D004340 ORTHO05D006363 4.3e-31 138.7 163 43.6
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 1.8e-24 116.7 110 53.6
MCO02G279 Micromonas commoda HOM05D004340 ORTHO05D006363 1.3e-22 110.5 167 38.3
RcHm_v2.0_Chr1g0372981 Rosa chinensis HOM05D004340 ORTHO05D013606 3.8e-19 99.0 73 60.3
Cre10.g460532 Chlamydomonas reinhardtii HOM05D004340 ORTHO05D006363 9.6e-15 84.3 203 25.1
CBR_g545 Chara braunii HOM05D004340 ORTHO05D006363 1.3e-14 84.0 114 33.3
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 3.7e-14 82.4 71 63.4
PSO423G0166 Papaver somniferum HOM05D004340 ORTHO05D006363 4.1e-13 79.0 105 41.0
SEGI_17726 Sequoiadendron giganteum HOM05D004340 ORTHO05D006363 1.3e-08 63.9 47 53.2
Medtr0073s0020 Medicago truncatula HOM05D001042 ORTHO05D007836 6.7e-08 61.6 40 75.0
Medtr7g022050 Medicago truncatula HOM05D001042 ORTHO05D007836 8.7e-08 61.2 41 73.2
Nn1g04519 Nelumbo nucifera HOM05D004340 ORTHO05D006363 8.2e-06 54.7 39 56.4


User provided reference genes

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