Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 2.3e-93 345.5 171 100.0
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 6.8e-93 344.0 171 99.4
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 5.3e-90 334.3 171 95.3
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 5.3e-90 334.3 171 95.3
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 5.3e-90 334.3 171 95.3
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 7.0e-90 334.0 171 95.3
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 2.7e-89 332.0 171 94.7
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 2.2e-88 328.9 169 93.5
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 5.0e-88 327.8 169 95.9
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 5.0e-88 327.8 169 92.9
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 4.0e-85 318.2 171 88.3
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 5.7e-84 314.3 169 88.8
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 3.7e-83 311.6 172 87.2
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 4.1e-82 308.1 171 86.0
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.4e-74 283.1 167 79.0
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 2.2e-51 206.1 147 65.3
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 4.9e-51 204.9 147 65.3
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 3.2e-50 202.2 147 63.9
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 4.1e-50 201.8 147 63.3
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 7.1e-50 201.1 147 63.3
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 3.5e-49 198.7 147 63.9
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 4.6e-49 198.4 147 61.9
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 1.3e-48 196.8 142 64.1
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 2.3e-48 196.1 143 63.6
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 2.3e-48 196.1 143 63.6
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.3e-48 196.1 142 64.1
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 3.0e-48 195.7 142 64.1
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 5.1e-48 194.9 147 61.2
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 6.6e-48 194.5 142 63.4
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 6.6e-48 194.5 142 63.4
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 6.6e-48 194.5 142 63.4
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 6.6e-48 194.5 142 63.4
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 6.6e-48 194.5 142 63.4
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 1.5e-47 193.4 142 62.7
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 1.9e-47 193.0 147 61.2
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 2.5e-47 192.6 149 60.4
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 3.3e-47 192.2 147 61.2
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 5.6e-47 191.4 142 62.7
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 5.6e-47 191.4 147 60.5
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 7.3e-47 191.0 147 60.5
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 9.6e-47 190.7 142 61.3
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 1.6e-46 189.9 144 61.1
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.1e-46 189.5 147 59.9
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 2.1e-46 189.5 144 61.1
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.1e-45 187.2 147 57.8
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 1.4e-45 186.8 144 59.7
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 1.4e-45 186.8 147 59.9
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.4e-45 186.8 144 60.4
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 2.4e-45 186.0 147 58.5
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 2.4e-45 186.0 147 59.2
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 4.0e-45 185.3 147 59.2
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 4.0e-45 185.3 147 58.5
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 4.0e-45 185.3 147 60.5
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 4.0e-45 185.3 149 58.4
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 5.2e-45 184.9 140 60.7
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 5.2e-45 184.9 147 57.8
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 5.2e-45 184.9 147 58.5
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 5.2e-45 184.9 147 58.5
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 6.8e-45 184.5 147 60.5
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 8.9e-45 184.1 147 57.1
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.5e-44 183.3 149 59.1
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.5e-44 183.3 147 59.2
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 1.5e-44 183.3 147 57.8
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 2.0e-44 183.0 142 62.0
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.0e-44 183.0 147 59.2
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 2.0e-44 183.0 147 59.2
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 3.4e-44 182.2 140 61.4
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 4.4e-44 181.8 139 60.4
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 4.4e-44 181.8 139 60.4
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 4.4e-44 181.8 144 58.3
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 4.4e-44 181.8 147 59.2
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 4.4e-44 181.8 147 60.5
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 5.8e-44 181.4 139 61.2
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 7.6e-44 181.0 140 60.7
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 9.9e-44 180.6 139 60.4
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 2.2e-43 179.5 140 59.3
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 2.2e-43 179.5 149 57.7
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 3.8e-43 178.7 140 61.4
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 3.8e-43 178.7 135 63.0
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 4.9e-43 178.3 139 59.7
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 6.4e-43 177.9 140 60.7
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 8.4e-43 177.6 140 60.0
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 8.4e-43 177.6 135 61.5
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 8.4e-43 177.6 135 61.5
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 8.4e-43 177.6 135 60.7
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 1.4e-42 176.8 141 58.9
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.4e-42 176.8 145 57.2
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.9e-42 176.4 132 62.9
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 2.4e-42 176.0 142 58.5
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 2.4e-42 176.0 140 58.6
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 2.4e-42 176.0 132 61.4
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 3.2e-42 175.6 138 58.7
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 4.2e-42 175.3 140 58.6
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 4.2e-42 175.3 145 56.6
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 5.4e-42 174.9 135 60.7
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 5.4e-42 174.9 139 59.7
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 7.1e-42 174.5 141 57.4
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.2e-41 173.7 135 61.5
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 1.6e-41 173.3 140 57.1
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.6e-41 173.3 132 59.8
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 2.1e-41 172.9 139 57.6
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 2.1e-41 172.9 139 57.6
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 2.1e-41 172.9 139 56.8
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 4.6e-41 171.8 139 59.0
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 6.0e-41 171.4 140 57.9
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 6.0e-41 171.4 148 57.4
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 6.0e-41 171.4 138 60.1
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.0e-40 170.6 137 59.1
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 1.3e-40 170.2 138 59.4
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.3e-40 169.5 140 58.6
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 2.3e-40 169.5 140 57.9
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 2.3e-40 169.5 142 57.0
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 3.9e-40 168.7 162 53.1
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 8.7e-40 167.5 140 56.4
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 1.9e-39 166.4 136 54.4
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 1.3e-38 163.7 140 55.7
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 1.8e-37 159.8 144 53.5
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 4.0e-37 158.7 142 52.1
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 6.9e-37 157.9 132 55.3
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 3.4e-36 155.6 115 60.0
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 4.9e-35 151.8 140 51.4
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 1.9e-34 149.8 132 55.3
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 3.2e-34 149.1 107 68.2
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 3.3e-31 139.0 170 42.4
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 6.2e-30 134.8 164 41.5
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 9.0e-29 131.0 110 61.8
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 4.9e-27 125.2 161 39.8
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 1.3e-24 117.1 150 41.3
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 1.9e-23 113.2 81 60.5
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.4e-21 106.3 143 39.9
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 4.5e-20 102.1 163 35.0
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 1.0e-19 100.9 111 51.4
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 1.0e-19 100.9 79 55.7
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 4.9e-19 98.6 155 35.5
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.9e-18 96.7 142 38.7
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 6.0e-17 91.7 153 32.7
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 7.9e-17 91.3 159 36.5
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 1.5e-15 87.0 163 31.9
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 9.6e-15 84.3 133 32.3
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 9.0e-13 77.8 71 47.9
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.5e-12 77.0 116 37.1
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.5e-12 77.0 65 60.0
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.3e-11 73.9 67 53.7
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 5.0e-11 72.0 63 54.0
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 3.2e-10 69.3 69 47.8
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.3e-06 57.4 96 34.4
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.3e-06 57.4 96 34.4
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.8e-06 56.2 86 37.2


User provided reference genes

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