Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p52430 Brassica napus HOM05D003545 ORTHO05D024095 2.4e-101 372.1 179 100.0
C09p36080 Brassica napus HOM05D003545 ORTHO05D024095 3.0e-91 338.6 166 96.4
BolC9t56447H Brassica oleracea HOM05D003545 ORTHO05D024095 2.1e-89 332.4 162 97.5
BolC5t31394H Brassica oleracea HOM05D003545 ORTHO05D024095 9.9e-87 323.6 176 89.8
C01p23170 Brassica napus HOM05D001404 ORTHO05D004720 6.4e-70 267.7 170 80.0
BcaC04g21066 Brassica carinata HOM05D000458 ORTHO05D000951 2.5e-53 212.6 118 86.4
BcaC05g29263 Brassica carinata HOM05D003545 ORTHO05D024095 4.8e-49 198.4 128 78.1
BcaC03g16226 Brassica carinata HOM05D003545 ORTHO05D011382 2.2e-33 146.4 147 57.1
Eucgr.E04344 Eucalyptus grandis HOM05D003545 ORTHO05D004720 1.9e-29 133.3 111 61.3
BcaB02g08203 Brassica carinata HOM05D003545 ORTHO05D004720 2.5e-29 132.9 117 64.1
BcaC08g45018 Brassica carinata HOM05D003545 ORTHO05D004720 5.5e-29 131.7 117 63.2
A09p52330 Brassica napus HOM05D003545 ORTHO05D004720 5.5e-29 131.7 117 63.2
C06p26500 Brassica napus HOM05D003545 ORTHO05D004720 5.5e-29 131.7 117 63.2
BolC6t37813H Brassica oleracea HOM05D003545 ORTHO05D004720 5.5e-29 131.7 117 63.2
BraA09t40662Z Brassica rapa HOM05D003545 ORTHO05D004720 5.5e-29 131.7 117 63.2
BolC8t51103H Brassica oleracea HOM05D003545 ORTHO05D004720 7.2e-29 131.3 115 63.5
BcaB02g07435 Brassica carinata HOM05D003545 ORTHO05D004720 1.2e-28 130.6 117 62.4
BraA07t30135Z Brassica rapa HOM05D003545 ORTHO05D004720 1.2e-28 130.6 117 62.4
BcaC07g40404 Brassica carinata HOM05D003545 ORTHO05D004720 1.6e-28 130.2 115 63.5
A07p24930 Brassica napus HOM05D003545 ORTHO05D004720 1.6e-28 130.2 117 62.4
C08p34990 Brassica napus HOM05D003545 ORTHO05D004720 1.6e-28 130.2 115 63.5
AT3G59990 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 3.6e-28 129.0 120 60.0
A04p01940 Brassica napus HOM05D003545 ORTHO05D004720 4.7e-28 128.6 117 61.5
BraA04t15918Z Brassica rapa HOM05D003545 ORTHO05D004720 4.7e-28 128.6 117 61.5
AL5G42170 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 1.8e-27 126.7 120 59.2
Carub.0005s2672 Capsella rubella HOM05D003545 ORTHO05D004720 2.3e-27 126.3 120 59.2
Sp5g03190 Schrenkiella parvula HOM05D003545 ORTHO05D004720 3.0e-27 125.9 117 59.8
EL10Ac3g06198 Beta vulgaris HOM05D003545 ORTHO05D004720 5.2e-27 125.2 116 56.0
Thhalv10005983m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 6.7e-27 124.8 120 58.3
Hund22664 Selenicereus undatus HOM05D003545 ORTHO05D004720 6.7e-27 124.8 117 59.0
CARHR170310 Cardamine hirsuta HOM05D003545 ORTHO05D004720 8.8e-27 124.4 120 58.3
ClCG05G010600 Citrullus lanatus HOM05D003545 ORTHO05D004720 8.8e-27 124.4 117 59.0
THA.LOC104804455 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 8.8e-27 124.4 117 59.0
Aa31LG10G14210 Aethionema arabicum HOM05D003545 ORTHO05D004720 1.5e-26 123.6 117 59.0
AUR62002514 Chenopodium quinoa HOM05D003545 ORTHO05D004720 1.5e-26 123.6 117 59.0
AUR62023680 Chenopodium quinoa HOM05D003545 ORTHO05D004720 1.5e-26 123.6 117 59.0
Sed0004430 Sechium edule HOM05D003545 ORTHO05D004720 1.5e-26 123.6 117 58.1
GSVIVG01027489001 Vitis vinifera HOM05D003545 ORTHO05D004720 1.5e-26 123.6 120 57.5
Eucgr.H00238 Eucalyptus grandis HOM05D003545 ORTHO05D004720 2.0e-26 123.2 120 56.7
SalBow3G0142 Salvia bowleyana HOM05D003545 ORTHO05D004720 2.0e-26 123.2 117 59.0
Eucgr.E00006 Eucalyptus grandis HOM05D003545 ORTHO05D004720 3.3e-26 122.5 120 56.7
MELO3C020334.2 Cucumis melo HOM05D003545 ORTHO05D004720 5.7e-26 121.7 117 57.3
CsaV3_3G017890 Cucumis sativus L. HOM05D003545 ORTHO05D004720 5.7e-26 121.7 117 57.3
PGR042G1967 Punica granatum HOM05D003545 ORTHO05D004720 5.7e-26 121.7 120 55.8
Gorai.007G172000 Gossypium raimondii HOM05D003545 ORTHO05D004720 7.4e-26 121.3 117 57.3
Ciclev10020270m.g Citrus clementina HOM05D003545 ORTHO05D004720 9.7e-26 120.9 120 56.7
Manes.01G007800 Manihot esculenta HOM05D003545 ORTHO05D004720 9.7e-26 120.9 117 56.4
QL02p099802 Quercus lobata HOM05D003545 ORTHO05D004720 9.7e-26 120.9 120 55.8
QL02p099813 Quercus lobata HOM05D003545 ORTHO05D004720 9.7e-26 120.9 120 55.8
Nn1g09395 Nelumbo nucifera HOM05D003545 ORTHO05D004720 1.3e-25 120.6 117 56.4
Sed0011009 Sechium edule HOM05D003545 ORTHO05D004720 1.3e-25 120.6 117 56.4
TAR636G2827 Trochodendron aralioides HOM05D003545 ORTHO05D004720 1.3e-25 120.6 119 52.1
Haze_01811 Corylus avellana HOM05D003545 ORTHO05D004720 1.7e-25 120.2 117 56.4
arahy.Tifrunner.gnm1.ann1.J1JEGY Arachis hypogaea HOM05D003545 ORTHO05D004720 2.2e-25 119.8 116 55.2
CANSAT64G0507 Cannabis sativa HOM05D003545 ORTHO05D004720 2.2e-25 119.8 118 55.1
Lj1A1040G36 Lonicera japonica HOM05D003545 ORTHO05D004720 2.2e-25 119.8 120 55.0
Lj6g0020499 Lotus japonicus HOM05D003545 ORTHO05D004720 2.2e-25 119.8 117 55.6
RcHm_v2.0_Chr1g0328111 Rosa chinensis HOM05D003545 ORTHO05D004720 2.2e-25 119.8 122 53.3
Sabra04G0056000 Salix brachista HOM05D003545 ORTHO05D004720 2.2e-25 119.8 117 57.3
Atru.chr11.677 Acer truncatum HOM05D003545 ORTHO05D004720 2.8e-25 119.4 117 55.6
arahy.Tifrunner.gnm1.ann1.UV5XRQ Arachis hypogaea HOM05D003545 ORTHO05D004720 2.8e-25 119.4 117 56.4
Cc03_g16230 Coffea canephora HOM05D003545 ORTHO05D004720 2.8e-25 119.4 117 55.6
Dinv14603 Davidia involucrata HOM05D003545 ORTHO05D004720 2.8e-25 119.4 117 54.7
Gohir.A11G154800 Gossypium hirsutum HOM05D003545 ORTHO05D004720 2.8e-25 119.4 117 56.4
Lalb_Chr24g0392661 Lupinus albus HOM05D003545 ORTHO05D004720 2.8e-25 119.4 116 53.4
MSTRG.24538 Avicennia marina HOM05D003545 ORTHO05D004720 3.7e-25 119.0 115 57.4
CiPaw.05G050600 Carya illinoinensis HOM05D003545 ORTHO05D004720 3.7e-25 119.0 117 55.6
Zm00001eb173260 Zea mays HOM05D003545 ORTHO05D004720 3.7e-25 119.0 117 56.4
Aqoxy5G02074 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 4.8e-25 118.6 117 54.7
Cc03_g16260 Coffea canephora HOM05D003545 ORTHO05D004720 4.8e-25 118.6 117 55.6
Migut.N01930 Erythranthe guttata HOM05D003545 ORTHO05D004720 4.8e-25 118.6 119 56.3
Rhsim09G0000700 Rhododendron simsii HOM05D003545 ORTHO05D004720 4.8e-25 118.6 153 45.1
TWI75G0601 Tripterygium wilfordii HOM05D003545 ORTHO05D004720 4.8e-25 118.6 117 54.7
Aqoxy5G02072 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 6.3e-25 118.2 117 55.6
Gohir.D11G161700 Gossypium hirsutum HOM05D003545 ORTHO05D004720 6.3e-25 118.2 117 56.4
QL02p098432 Quercus lobata HOM05D003545 ORTHO05D004720 6.3e-25 118.2 128 52.3
BolC2t10031H Brassica oleracea HOM05D003545 ORTHO05D011382 8.2e-25 117.9 136 49.3
CSS0015354 Camellia sinensis var. sinensis HOM05D003545 ORTHO05D004720 8.2e-25 117.9 120 54.2
Potri.004G084800 Populus trichocarpa HOM05D003545 ORTHO05D004720 8.2e-25 117.9 117 56.4
Sc10g0003580 Simmondsia chinensis HOM05D003545 ORTHO05D004720 8.2e-25 117.9 117 55.6
HanXRQChr12g0379661 Helianthus annuus HOM05D003545 ORTHO05D004720 1.1e-24 117.5 117 55.6
MD17G1285400 Malus domestica HOM05D003545 ORTHO05D004720 1.1e-24 117.5 120 53.3
Prupe.2G330300 Prunus persica HOM05D003545 ORTHO05D004720 1.1e-24 117.5 122 51.6
Sopen01g002780 Solanum pennellii HOM05D003545 ORTHO05D004720 1.1e-24 117.5 117 55.6
C02p40050 Brassica napus HOM05D003545 ORTHO05D011382 1.4e-24 117.1 136 49.3
COL.COLO4_20004 Corchorus olitorius HOM05D003545 ORTHO05D004720 1.4e-24 117.1 117 56.4
Oeu050295.1 Olea europaea HOM05D003545 ORTHO05D004720 1.4e-24 117.1 115 53.9
Psat6g212640 Pisum sativum HOM05D003545 ORTHO05D004720 1.8e-24 116.7 117 54.7
SGA_v2.0_scaffold334G49082 Striga asiatica HOM05D003545 ORTHO05D004720 1.8e-24 116.7 117 54.7
ATR0594G119 Amborella trichopoda HOM05D003545 ORTHO05D004720 2.4e-24 116.3 117 55.6
PSO782G1687 Papaver somniferum HOM05D003545 ORTHO05D004720 2.4e-24 116.3 117 55.6
Carub.0004s2675 Capsella rubella HOM05D003545 ORTHO05D004720 3.1e-24 115.9 117 57.3
Cpa.g.sc9.232 Carica papaya HOM05D003545 ORTHO05D004720 3.1e-24 115.9 117 52.1
Potri.017G133200 Populus trichocarpa HOM05D003545 ORTHO05D004720 3.1e-24 115.9 120 55.8
SGA_v2.0_scaffold286G47136 Striga asiatica HOM05D003545 ORTHO05D004720 3.1e-24 115.9 115 53.0
CAN.G911.7 Capsicum annuum HOM05D003545 ORTHO05D004720 4.1e-24 115.5 115 55.7
Thhalv10001459m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 4.1e-24 115.5 117 56.4
Nitab4.5_0002417g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 4.1e-24 115.5 115 55.7
Nitab4.5_0011686g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 4.1e-24 115.5 115 55.7
SEGI_07894 Sequoiadendron giganteum HOM05D003545 ORTHO05D004720 4.1e-24 115.5 117 54.7
BcaC01g05183 Brassica carinata HOM05D003545 ORTHO05D004720 5.3e-24 115.2 117 56.4
C03p29450 Brassica napus HOM05D003545 ORTHO05D004720 5.3e-24 115.2 117 56.4
BolC3t15293H Brassica oleracea HOM05D003545 ORTHO05D004720 5.3e-24 115.2 117 56.4
A03p24710 Brassica napus HOM05D003545 ORTHO05D004720 7.0e-24 114.8 117 56.4
Glyma.19G001700 Glycine max HOM05D003545 ORTHO05D004720 7.0e-24 114.8 117 53.0
Medtr1g105940 Medicago truncatula HOM05D003545 ORTHO05D004720 7.0e-24 114.8 117 53.0
Medtr4g109100 Medicago truncatula HOM05D003545 ORTHO05D004720 7.0e-24 114.8 117 53.0
DCAR_005465 Daucus carota HOM05D003545 ORTHO05D004720 9.1e-24 114.4 117 54.7
ECA246G2273 Erigeron canadensis HOM05D003545 ORTHO05D004720 9.1e-24 114.4 117 53.8
Glyma.05G001900 Glycine max HOM05D003545 ORTHO05D004720 9.1e-24 114.4 117 53.0
PSO063G3599 Papaver somniferum HOM05D003545 ORTHO05D004720 9.1e-24 114.4 117 53.8
Peaxi162Scf00184g00109 Petunia axillaris HOM05D003545 ORTHO05D004720 9.1e-24 114.4 115 54.8
PGSC0003DMG400021374 Solanum tuberosum HOM05D003545 ORTHO05D004720 9.1e-24 114.4 115 54.8
VMungo1080G0943 Vigna mungo HOM05D003545 ORTHO05D004720 9.1e-24 114.4 117 53.8
BcaC04g21064 Brassica carinata HOM05D003545 ORTHO05D000065 1.2e-23 114.0 58 91.4
Duzib138G0328 Durio zibethinus HOM05D003545 ORTHO05D004720 1.2e-23 114.0 117 54.7
Lsat_1_v5_gn_5_37781 Lactuca sativa HOM05D003545 ORTHO05D004720 1.2e-23 114.0 117 53.8
Rhsim09G0038700 Rhododendron simsii HOM05D003545 ORTHO05D004720 1.2e-23 114.0 128 48.4
FvH4_5g31110 Fragaria vesca HOM05D003545 ORTHO05D004720 1.6e-23 113.6 115 53.0
FvH4_5g31120 Fragaria vesca HOM05D003545 ORTHO05D004720 1.6e-23 113.6 115 53.0
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.6e-23 113.6 115 53.0
Os08g0542000 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 1.6e-23 113.6 117 54.7
RcHm_v2.0_Chr1g0332011 Rosa chinensis HOM05D003545 ORTHO05D004720 1.6e-23 113.6 108 53.7
Sp4g26260 Schrenkiella parvula HOM05D003545 ORTHO05D004720 1.6e-23 113.6 117 55.6
TPR.G21147 Trifolium pratense HOM05D003545 ORTHO05D004720 1.6e-23 113.6 117 53.0
AL4G43110 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 2.0e-23 113.2 117 55.6
Duzib133G1379 Durio zibethinus HOM05D003545 ORTHO05D004720 2.0e-23 113.2 117 53.0
RcHm_v2.0_Chr1g0328121 Rosa chinensis HOM05D003545 ORTHO05D004720 2.0e-23 113.2 115 53.0
MSTRG.22061 Avicennia marina HOM05D003545 ORTHO05D004720 2.6e-23 112.8 115 54.8
CDE07G0638 Ceratophyllum demersum HOM05D003545 ORTHO05D004720 2.6e-23 112.8 117 53.0
CiPaw.06G144300 Carya illinoinensis HOM05D003545 ORTHO05D004720 3.5e-23 112.5 117 55.6
Ca_11016_v3 Cicer arietinum L. HOM05D003545 ORTHO05D004720 3.5e-23 112.5 117 51.3
Os12g0628500 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 4.5e-23 112.1 117 52.1
AT2G44180 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 5.9e-23 111.7 115 53.0
Aa31LG1G25840 Aethionema arabicum HOM05D003545 ORTHO05D004720 1.0e-22 110.9 117 54.7
FAN13G2420 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.0e-22 110.9 115 52.2
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.3e-22 110.5 115 52.2
Mapoly0009s0208 Marchantia polymorpha HOM05D003545 ORTHO05D004720 1.3e-22 110.5 119 50.4
Pp3c18_2250 Physcomitrium patens HOM05D003545 ORTHO05D004720 1.7e-22 110.2 117 51.3
Pp3c18_2370 Physcomitrium patens HOM05D003545 ORTHO05D004720 1.7e-22 110.2 117 51.3
Thecc.01G176200 Theobroma cacao HOM05D003545 ORTHO05D004720 2.9e-22 109.4 117 51.3
Mapoly0009s0058 Marchantia polymorpha HOM05D003545 ORTHO05D004720 8.5e-22 107.8 119 48.7
SMO230G0032 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 1.5e-21 107.1 117 50.4
SMO340G0246 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 1.5e-21 107.1 117 50.4
SMO367G0222 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 1.5e-21 107.1 117 50.4
CARHR139340 Cardamine hirsuta HOM05D003545 ORTHO05D004720 1.9e-21 106.7 117 53.0
C03p30540 Brassica napus HOM05D003545 ORTHO05D031779 5.5e-21 105.1 92 62.0
BcaC08g45078 Brassica carinata HOM05D003545 ORTHO05D004720 1.2e-20 104.0 124 50.0
C06p26870 Brassica napus HOM05D003545 ORTHO05D004720 1.2e-20 104.0 124 50.0
BolC6t37861H Brassica oleracea HOM05D003545 ORTHO05D004720 1.2e-20 104.0 124 50.0
CBR_g52643 Chara braunii HOM05D003545 ORTHO05D004720 1.2e-20 104.0 114 47.4
MBI03_g28950_MAGBIO Magnolia biondii HOM05D003545 ORTHO05D004720 2.7e-20 102.8 151 40.4
AagrBONN_evm.TU.Sc2ySwM_362.208 Anthoceros agrestis HOM05D003545 ORTHO05D004720 3.6e-20 102.4 117 48.7
Rhsim09G0038900 Rhododendron simsii HOM05D009719 ORTHO05D003904 1.0e-19 100.9 168 37.5
THA.LOC104802530 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 1.8e-19 100.1 69 71.0
CDE04G0368 Ceratophyllum demersum HOM05D003545 ORTHO05D004720 3.0e-19 99.4 106 51.9
C04p32790 Brassica napus HOM05D003545 ORTHO05D004720 5.2e-19 98.6 117 54.7
BcaC02g10099 Brassica carinata HOM05D003545 ORTHO05D004720 2.6e-18 96.3 117 53.8
BolC4t24842H Brassica oleracea HOM05D003545 ORTHO05D004720 2.6e-18 96.3 117 53.8
RcHm_v2.0_Chr2g0090851 Rosa chinensis HOM05D003545 ORTHO05D011382 1.7e-17 93.6 53 77.4
vmacro00738 Vaccinium macrocarpon HOM05D003545 ORTHO05D004720 1.7e-17 93.6 68 66.2
BraA03t11677Z Brassica rapa HOM05D003545 ORTHO05D004720 4.8e-17 92.0 69 68.1
HPP92_003411 Vanilla planifolia HOM05D003545 ORTHO05D004720 3.1e-16 89.4 56 67.9
A02p20960 Brassica napus HOM05D003545 ORTHO05D031779 1.2e-15 87.4 108 50.9
PRCOL_00002364 Prasinoderma coloniale HOM05D003545 ORTHO05D004720 1.2e-15 87.4 114 41.2
Cre16.g652100 Chlamydomonas reinhardtii HOM05D003545 ORTHO05D004720 1.6e-15 87.0 115 39.1
MCO01G510 Micromonas commoda HOM05D003545 ORTHO05D004720 6.5e-14 81.6 110 40.9
Haze_26740 Corylus avellana HOM05D003545 ORTHO05D004720 2.7e-12 76.3 111 36.0
AL1G66220 Arabidopsis lyrata HOM05D003545 ORTHO05D079241 6.8e-11 71.6 57 56.1
Solyc01g006800.4 Solanum lycopersicum HOM05D003545 ORTHO05D004720 6.8e-11 71.6 40 80.0
AL4G43130 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 5.9e-07 58.5 75 44.0
BcaB06g28787 Brassica carinata HOM05D000084 ORTHO05D000065 6.6e-06 55.1 31 80.6


User provided reference genes

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