Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 0.0e+00 1517.3 847 100.0
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 0.0e+00 1320.1 831 90.3
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 0.0e+00 1315.8 828 90.3
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 0.0e+00 1303.5 846 86.9
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 0.0e+00 1271.1 827 86.9
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 0.0e+00 1195.3 836 81.8
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 0.0e+00 1164.4 842 79.1
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 7.8e-283 977.2 850 69.2
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 9.5e-281 970.3 784 73.1
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 1.3e-274 949.9 849 67.7
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 4.0e-271 938.3 784 71.2
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 1.4e-268 929.9 785 70.3
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 3.0e-234 815.8 847 62.2
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 8.3e-184 648.3 871 52.6
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 1.6e-110 404.8 935 39.8
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 1.1e-103 382.1 928 38.1
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 1.6e-102 378.3 906 38.1
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 3.9e-101 373.6 854 39.5
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 4.4e-100 370.2 945 38.2
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 3.7e-99 367.1 924 38.4
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 4.8e-99 366.7 942 38.9
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 6.3e-99 366.3 927 38.4
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 3.1e-98 364.0 913 37.7
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 4.1e-98 363.6 928 37.7
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 1.2e-97 362.1 921 36.5
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 5.9e-97 359.8 946 36.8
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.3e-96 358.6 925 37.6
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 4.7e-94 350.1 900 37.7
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 3.9e-93 347.1 910 38.2
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 5.2e-93 346.7 951 36.8
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 1.1e-92 345.5 941 36.8
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.1e-92 345.5 951 36.5
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 1.4e-90 338.6 981 35.4
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 3.1e-90 337.4 902 37.0
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 3.1e-90 337.4 933 36.4
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 9.1e-90 335.9 918 36.9
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 1.2e-89 335.5 891 36.6
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.0e-88 332.4 910 36.5
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 2.9e-88 330.9 801 37.6
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 2.9e-88 330.9 918 35.7
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 5.5e-87 326.6 915 36.0
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 9.4e-87 325.9 948 35.4
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.6e-86 323.9 948 35.4
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 4.7e-86 323.6 937 35.9
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.8e-85 321.6 926 36.1
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 5.2e-85 320.1 924 34.6
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 1.2e-84 318.9 926 34.2
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 9.8e-84 315.8 923 35.6
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 2.2e-83 314.7 982 33.9
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 1.8e-82 311.6 914 33.7
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 3.1e-82 310.8 902 36.3
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 7.0e-82 309.7 906 33.8
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 7.0e-82 309.7 874 33.4
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 5.9e-81 306.6 807 35.9
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 5.9e-81 306.6 948 33.4
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 1.0e-80 305.8 914 34.8
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 1.3e-80 305.4 938 35.2
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 6.5e-80 303.1 932 34.8
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 8.5e-80 302.8 905 35.5
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 1.9e-79 301.6 934 35.3
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 2.5e-79 301.2 914 32.7
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 2.7e-78 297.7 798 35.5
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 3.6e-78 297.4 933 35.6
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 4.7e-78 297.0 873 35.4
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 8.0e-78 296.2 816 35.3
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 1.0e-77 295.8 856 32.9
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 1.4e-77 295.4 813 33.8
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 1.4e-77 295.4 953 34.1
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 8.8e-77 292.7 827 34.8
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 8.8e-77 292.7 911 33.2
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 2.0e-76 291.6 830 36.6
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 2.0e-76 291.6 981 31.7
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 2.6e-76 291.2 872 34.7
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 3.4e-76 290.8 909 36.3
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 1.7e-75 288.5 895 32.7
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 1.2e-73 282.3 907 32.9
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 2.0e-73 281.6 928 34.4
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 4.5e-73 280.4 916 33.7
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 2.9e-72 277.7 908 33.1
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 6.6e-72 276.6 816 36.0
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 2.1e-70 271.6 937 32.8
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 4.7e-70 270.4 797 35.5
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 4.4e-68 263.8 847 33.9
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 5.7e-68 263.5 924 33.7
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 3.2e-66 257.7 908 32.4
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 4.1e-66 257.3 880 31.1
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 1.2e-65 255.8 910 31.0
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 1.3e-64 252.3 1025 31.7
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 1.9e-63 248.4 957 33.9
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.0e-61 242.7 938 32.8
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 8.9e-61 239.6 964 32.2
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 1.2e-60 239.2 742 35.3
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 1.5e-60 238.8 856 33.2
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 3.4e-60 237.7 859 33.1
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 3.4e-60 237.7 894 32.2
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 2.9e-59 234.6 802 34.7
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 4.1e-58 230.7 985 30.1
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 9.5e-55 219.5 877 32.0
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 8.1e-54 216.5 918 31.2
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 5.4e-50 203.8 872 32.1
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 5.4e-50 203.8 689 35.3
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 9.2e-50 203.0 880 30.8
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 6.0e-49 200.3 820 30.6
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 2.1e-46 191.8 917 29.3
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 5.8e-44 183.7 1026 29.0
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 9.9e-44 183.0 154 63.0
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 1.7e-43 182.2 872 30.8
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 3.7e-43 181.0 885 28.0
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 3.3e-39 167.9 866 31.2
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 8.1e-38 163.3 159 59.7
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 3.8e-35 154.5 753 29.1
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 6.6e-32 143.7 159 50.9
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 5.3e-29 134.0 402 31.6
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 6.9e-29 133.7 405 31.1
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 5.8e-28 130.6 181 45.9
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.9e-23 115.5 1007 24.2
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 3.3e-23 114.8 250 39.2
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 1.8e-21 109.0 158 43.0
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 1.5e-20 105.9 475 29.3
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 2.2e-19 102.1 161 41.0
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 1.8e-13 82.4 97 47.4
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 3.4e-12 78.2 157 36.3
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 1.7e-11 75.9 187 31.0
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 1.4e-10 72.8 73 47.9
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 5.5e-10 70.9 301 30.6
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 8.2e-06 57.0 452 28.3


User provided reference genes

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