Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p51720 Brassica napus HOM05D003079 ORTHO05D003461 3.6e-214 748.0 394 100.0
BolC1t05117H Brassica oleracea HOM05D003079 ORTHO05D003461 1.5e-207 726.1 394 97.0
BcaC09g48303 Brassica carinata HOM05D003079 ORTHO05D003461 4.2e-207 724.5 394 97.0
BraA01t04061Z Brassica rapa HOM05D003079 ORTHO05D003461 4.7e-158 561.6 424 77.4
A01p40240 Brassica napus HOM05D003079 ORTHO05D003461 2.4e-157 559.3 424 77.1
BcaB04g21010 Brassica carinata HOM05D003079 ORTHO05D003461 7.3e-151 537.7 414 76.1
Sp3g11560 Schrenkiella parvula HOM05D003079 ORTHO05D003461 2.2e-139 499.6 445 68.5
BcaC01g03997 Brassica carinata HOM05D003079 ORTHO05D003461 3.5e-129 465.7 419 67.5
C03p46320 Brassica napus HOM05D003079 ORTHO05D003461 1.5e-127 460.3 420 66.9
A03p38160 Brassica napus HOM05D003079 ORTHO05D003461 3.3e-127 459.1 418 67.5
BolC3t16901H Brassica oleracea HOM05D003079 ORTHO05D003461 3.3e-127 459.1 419 67.1
BraA03t12969Z Brassica rapa HOM05D003079 ORTHO05D003461 3.3e-127 459.1 418 67.5
Thhalv10020643m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 1.4e-125 453.8 435 64.6
BcaB04g18754 Brassica carinata HOM05D003079 ORTHO05D003461 1.1e-122 444.1 414 66.2
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.8e-120 436.8 438 64.8
CARHR087980 Cardamine hirsuta HOM05D003079 ORTHO05D003461 6.5e-115 418.3 422 63.0
AT3G13360 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 1.1e-106 391.0 438 59.4
Carub.0003s1274 Capsella rubella HOM05D003079 ORTHO05D003461 1.4e-106 390.6 443 59.1
Aa31LG8G580 Aethionema arabicum HOM05D003079 ORTHO05D003461 5.2e-96 355.5 412 57.3
THA.LOC104815679 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 2.2e-62 243.8 424 45.0
THA.LOC104810573 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 3.8e-46 189.9 417 40.3
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 2.3e-35 154.1 444 32.2
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 2.1e-33 147.5 433 33.0
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 3.6e-33 146.7 440 32.7
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 1.4e-29 134.8 550 30.9
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 5.4e-29 132.9 432 31.5
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 2.1e-28 131.0 550 31.6
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 3.5e-28 130.2 533 30.4
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 1.0e-27 128.6 427 30.0
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 5.1e-27 126.3 548 29.6
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 8.7e-27 125.6 522 28.4
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 1.1e-26 125.2 474 30.6
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 1.9e-26 124.4 328 34.1
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.9e-26 124.4 541 29.8
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 9.6e-26 122.1 328 34.1
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 1.3e-25 121.7 541 29.2
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 4.8e-25 119.8 545 28.6
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 4.8e-25 119.8 541 29.2
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 4.8e-25 119.8 547 27.8
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 6.2e-25 119.4 539 28.9
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 8.1e-25 119.0 533 31.1
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 2.0e-23 114.4 450 30.4
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 2.6e-23 114.0 472 28.8
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 4.5e-23 113.2 525 28.0
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 5.8e-23 112.8 430 29.3
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 7.6e-23 112.5 431 29.2
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 7.6e-23 112.5 546 27.7
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 1.3e-22 111.7 520 28.1
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 1.7e-22 111.3 402 30.8
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 2.2e-22 110.9 418 31.1
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 2.2e-22 110.9 535 27.7
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 6.4e-22 109.4 493 28.0
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 6.4e-22 109.4 546 28.8
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 2.5e-21 107.5 333 31.8
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 4.2e-21 106.7 523 27.5
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 1.2e-20 105.1 332 31.3
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 1.6e-20 104.8 443 29.3
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.7e-20 104.0 536 28.4
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 4.6e-20 103.2 520 28.1
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 3.9e-19 100.1 443 28.4
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 3.9e-19 100.1 536 27.1
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 5.1e-19 99.8 417 30.2
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 6.7e-19 99.4 548 28.1
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 8.7e-19 99.0 565 25.7
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.5e-18 98.2 543 25.2
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.9e-18 97.8 519 26.4
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 2.5e-18 97.4 530 28.1
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 2.5e-18 97.4 438 28.8
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 3.3e-18 97.1 546 28.2
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 3.3e-18 97.1 516 29.3
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 3.3e-18 97.1 543 25.0
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 4.3e-18 96.7 432 28.5
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 4.3e-18 96.7 535 28.6
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 5.6e-18 96.3 530 27.9
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 5.6e-18 96.3 556 27.5
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 7.4e-18 95.9 432 28.5
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 9.6e-18 95.5 515 26.8
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 9.6e-18 95.5 552 28.6
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 9.6e-18 95.5 552 27.7
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 9.6e-18 95.5 552 28.6
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 1.6e-17 94.7 529 26.5
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 3.7e-17 93.6 551 27.4
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 3.7e-17 93.6 529 27.0
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 3.7e-17 93.6 539 26.3
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 4.8e-17 93.2 435 29.2
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 1.8e-16 91.3 396 28.8
C03p63130 Brassica napus HOM05D003079 ORTHO05D003461 3.1e-16 90.5 81 63.0
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 3.1e-16 90.5 539 26.2
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 5.3e-16 89.7 547 28.7
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 6.9e-16 89.4 540 28.5
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 6.9e-16 89.4 539 26.0
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 6.9e-16 89.4 509 25.1
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 9.0e-16 89.0 548 26.8
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 9.0e-16 89.0 531 24.5
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.2e-15 88.6 510 27.1
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 1.2e-15 88.6 547 25.8
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 3.4e-15 87.0 527 27.1
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 7.6e-15 85.9 529 28.2
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 7.6e-15 85.9 413 29.8
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 1.0e-14 85.5 539 27.6
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 1.3e-14 85.1 512 27.0
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.7e-14 84.7 546 25.5
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 1.7e-14 84.7 519 27.7
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 3.8e-14 83.6 538 26.8
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 3.8e-14 83.6 551 25.0
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 6.5e-14 82.8 528 26.3
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 6.5e-14 82.8 464 28.4
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 1.9e-13 81.3 519 27.2
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.9e-13 81.3 538 26.2
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 3.2e-13 80.5 531 24.9
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 4.2e-13 80.1 540 27.4
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 4.2e-13 80.1 512 26.0
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 9.3e-13 79.0 499 26.7
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 3.5e-12 77.0 378 29.1
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 3.5e-12 77.0 565 25.3
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 4.6e-12 76.6 443 26.6
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 7.9e-12 75.9 433 27.3
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 1.3e-11 75.1 380 26.8
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 1.8e-11 74.7 459 25.7
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 2.3e-11 74.3 381 27.3
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 3.0e-11 73.9 543 25.2
BcaC01g05490 Brassica carinata HOM05D041398 ORTHO05D032673 3.9e-11 73.6 63 63.5
C03p25880 Brassica napus HOM05D041398 ORTHO05D032673 3.9e-11 73.6 63 63.5
BolC3t14974H Brassica oleracea HOM05D041398 ORTHO05D032673 3.9e-11 73.6 63 63.5
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 3.9e-11 73.6 413 27.6
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 5.1e-11 73.2 414 26.3
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 6.7e-11 72.8 518 26.1
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 8.7e-11 72.4 540 23.9
BcaC04g20138 Brassica carinata HOM05D003079 ORTHO05D003461 2.8e-09 67.4 169 33.7
BolC9t57600H Brassica oleracea HOM05D003079 ORTHO05D003461 2.8e-09 67.4 169 33.7
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 2.8e-09 67.4 528 23.9
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 8.2e-09 65.9 486 25.9
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 8.2e-09 65.9 426 24.9
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 1.1e-08 65.5 510 25.1
C09p47450 Brassica napus HOM05D003079 ORTHO05D003461 1.4e-08 65.1 170 32.4
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 4.1e-08 63.5 497 23.1
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 4.1e-08 63.5 480 23.8
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 5.3e-08 63.2 301 27.9
CDE02G1968 Ceratophyllum demersum HOM05D000308 ORTHO05D003461 9.0e-08 62.4 373 26.3
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 1.2e-07 62.0 348 26.4
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 2.0e-07 61.2 284 26.1
A10p13440 Brassica napus HOM05D003079 ORTHO05D003461 2.6e-07 60.8 205 29.3
BraA10t43447Z Brassica rapa HOM05D003079 ORTHO05D003461 2.6e-07 60.8 205 29.3
TAR626G0479 Trochodendron aralioides HOM05D003079 ORTHO05D003461 5.9e-07 59.7 125 38.4
CARHR269610 Cardamine hirsuta HOM05D003079 ORTHO05D003461 7.7e-07 59.3 196 28.1
BcaB08g35981 Brassica carinata HOM05D003079 ORTHO05D003461 1.3e-06 58.5 221 28.5
ECA236G4881 Erigeron canadensis HOM05D003079 ORTHO05D003461 1.3e-06 58.5 368 26.9
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 1.7e-06 58.2 364 25.5
COL.COLO4_07791 Corchorus olitorius HOM05D003079 ORTHO05D003461 2.9e-06 57.4 287 28.2
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 2.9e-06 57.4 277 29.2


User provided reference genes

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