Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.8e-176 622.5 320 100.0
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.8e-176 622.5 320 100.0
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.8e-176 622.5 320 100.0
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-168 596.7 319 96.2
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 3.1e-168 595.1 320 96.6
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 5.0e-158 561.2 320 91.2
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 5.0e-158 561.2 320 91.2
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 1.5e-157 559.7 317 91.5
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.5e-157 559.7 323 89.5
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.9e-157 559.3 320 89.1
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 2.1e-156 555.8 320 90.0
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 2.1e-156 555.8 320 90.0
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 2.1e-156 555.8 320 90.0
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.8e-155 552.7 321 90.0
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.8e-155 552.7 321 90.0
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 5.2e-155 551.2 321 90.0
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 6.8e-155 550.8 321 89.7
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 2.6e-154 548.9 321 89.1
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 4.4e-154 548.1 323 87.6
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 7.5e-154 547.4 320 89.4
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.6e-151 539.7 323 86.7
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.8e-148 528.9 323 85.4
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 3.2e-144 515.4 323 83.6
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.3e-142 510.0 323 81.1
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.5e-141 505.8 320 81.9
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 7.3e-141 504.2 323 79.6
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.7e-140 501.5 321 79.8
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.7e-137 493.0 324 79.0
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 3.6e-132 475.3 320 78.4
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.1e-125 453.8 313 73.8
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.2e-122 443.7 322 72.0
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 2.2e-89 333.2 322 55.9
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 2.5e-88 329.7 320 55.3
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.2e-88 329.3 322 54.3
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 2.1e-87 326.6 316 54.1
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.7e-87 326.2 320 54.7
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 2.7e-87 326.2 322 54.0
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 6.1e-87 325.1 316 56.3
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.4e-86 323.9 330 53.6
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.3e-86 323.2 323 53.6
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 5.1e-86 322.0 317 54.3
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 8.8e-86 321.2 321 53.6
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 5.7e-85 318.5 324 53.7
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 9.7e-85 317.8 325 51.4
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.1e-83 312.4 324 50.6
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 4.5e-82 308.9 323 52.9
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 5.9e-82 308.5 306 55.6
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.3e-81 307.4 324 52.5
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.2e-81 306.6 320 52.5
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 3.8e-81 305.8 214 75.2
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.4e-80 301.2 323 52.6
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 9.4e-80 301.2 324 50.0
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 1.2e-79 300.8 315 54.6
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.6e-79 300.4 306 52.6
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.6e-79 300.4 330 50.9
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 6.1e-79 298.5 324 49.4
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 2.3e-78 296.6 330 49.1
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 8.8e-78 294.7 320 49.4
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.3e-76 290.8 324 47.5
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 1.7e-76 290.4 321 49.8
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 2.2e-76 290.0 319 50.5
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 6.3e-76 288.5 328 49.4
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 8.2e-76 288.1 325 48.9
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.1e-75 287.7 291 52.9
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.1e-75 287.7 321 49.5
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 2.4e-75 286.6 320 48.8
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 4.1e-75 285.8 319 48.3
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 5.3e-75 285.4 280 52.5
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 9.1e-75 284.6 319 49.5
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.2e-74 284.3 324 48.8
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 2.0e-74 283.5 323 50.5
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 7.7e-74 281.6 327 48.6
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 1.3e-73 280.8 362 47.8
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 3.8e-73 279.3 334 50.6
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 5.0e-73 278.9 318 47.8
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 5.0e-73 278.9 320 47.2
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 6.5e-73 278.5 323 48.9
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 8.5e-73 278.1 316 49.4
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.9e-72 276.9 273 53.5
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.9e-72 276.9 321 48.9
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 1.9e-72 276.9 314 47.5
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 4.2e-72 275.8 290 51.0
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 7.2e-72 275.0 317 48.3
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 7.2e-72 275.0 290 50.7
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 9.4e-72 274.6 318 47.5
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.6e-71 273.9 319 48.0
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.6e-71 273.9 319 48.3
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 2.7e-71 273.1 322 47.5
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 2.7e-71 273.1 321 46.4
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 2.7e-71 273.1 324 46.6
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.6e-71 272.7 317 47.3
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 4.7e-71 272.3 323 47.7
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.0e-70 271.2 319 47.6
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.4e-70 270.8 325 47.7
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 3.0e-70 269.6 323 47.4
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 3.3e-69 266.2 324 47.8
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 3.3e-69 266.2 322 47.8
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 4.4e-69 265.8 322 45.7
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 4.4e-69 265.8 320 47.2
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 7.5e-69 265.0 324 45.7
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 2.2e-68 263.5 284 49.6
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 3.7e-68 262.7 322 45.0
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 6.3e-68 261.9 317 44.5
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 6.3e-68 261.9 317 47.0
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 8.2e-68 261.5 325 47.4
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.1e-67 261.2 327 45.0
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.8e-67 260.4 316 45.6
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 3.1e-67 259.6 297 47.1
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 3.1e-67 259.6 317 45.7
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 4.1e-67 259.2 322 43.5
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.2e-66 257.7 314 47.1
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 2.7e-66 256.5 425 38.8
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 7.7e-66 255.0 317 45.4
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 7.7e-66 255.0 324 47.2
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.9e-64 250.4 296 46.3
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 3.2e-64 249.6 293 47.1
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 9.4e-64 248.1 323 43.7
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 2.1e-63 246.9 317 43.5
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 6.1e-63 245.4 324 45.7
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 1.0e-62 244.6 315 45.1
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 4.0e-62 242.7 324 42.9
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 5.7e-61 238.8 389 41.6
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.7e-60 237.3 259 51.0
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 6.3e-60 235.3 324 44.1
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.8e-59 233.8 259 50.6
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.4e-59 233.4 325 43.7
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 1.2e-58 231.1 259 47.5
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.9e-58 228.8 261 48.7
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.7e-57 227.3 287 43.9
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.7e-57 227.3 321 43.0
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 2.3e-57 226.9 318 42.1
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.9e-56 223.8 328 42.4
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 2.8e-55 219.9 322 43.8
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.0e-54 218.0 315 41.3
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 6.8e-54 215.3 317 40.7
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 9.8e-53 211.5 129 85.3
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.8e-52 209.9 129 84.5
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 6.6e-49 198.7 331 39.3
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 3.2e-43 179.9 225 44.0
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 5.6e-40 169.1 247 38.1
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.7e-36 156.4 331 32.3
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 7.0e-35 152.1 170 48.8
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.0e-34 150.6 120 67.5
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 6.0e-34 149.1 301 34.6
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 4.3e-32 142.9 161 50.3
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 6.8e-30 135.6 329 31.0
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.6e-29 133.7 168 45.2
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 2.9e-28 130.2 314 32.8
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 6.2e-23 112.5 193 36.8
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.9e-20 103.6 119 48.7
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.6e-16 88.6 90 52.2
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.6e-16 88.6 90 52.2
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.6e-15 87.8 95 47.4
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.1e-14 83.6 100 47.0
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 4.2e-11 73.2 81 48.1
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 5.4e-11 72.8 98 40.8
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 2.1e-10 70.9 68 48.5
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 2.1e-10 70.9 68 48.5
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 2.3e-09 67.4 137 32.8
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.1e-08 65.1 68 44.1
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 3.6e-07 60.1 93 33.3
Cre09.g392616 Chlamydomonas reinhardtii HOM05D004300 ORTHO05D005171 1.1e-06 58.5 323 22.0


User provided reference genes

Program Settings