Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 2.3e-176 622.1 309 100.0
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 2.3e-176 622.1 309 100.0
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 4.1e-141 505.0 258 97.7
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 4.6e-140 501.5 258 96.9
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 1.0e-139 500.4 250 100.0
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 1.5e-130 469.9 250 93.6
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 1.1e-125 453.8 249 89.2
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 3.5e-124 448.7 254 86.2
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 7.8e-124 447.6 249 87.6
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 1.3e-123 446.8 249 87.1
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 1.3e-123 446.8 249 87.1
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 4.8e-121 438.3 247 87.0
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 4.2e-117 425.2 251 82.5
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 1.0e-115 420.6 251 81.3
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 3.9e-115 418.7 247 83.4
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 3.3e-114 415.6 247 83.0
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 7.6e-111 404.4 247 81.0
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 5.4e-109 398.3 247 79.8
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 7.6e-103 377.9 254 73.6
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 9.6e-98 360.9 248 75.0
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 3.1e-96 355.9 230 74.8
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 7.9e-92 341.3 256 67.6
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 7.9e-92 341.3 238 71.0
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 7.9e-92 341.3 241 70.5
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 1.0e-91 340.9 237 70.9
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 1.0e-91 340.9 228 72.4
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 1.0e-91 340.9 241 69.7
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 3.0e-91 339.3 227 72.2
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 6.7e-91 338.2 227 72.7
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 1.9e-90 336.7 226 73.5
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 2.5e-90 336.3 217 74.7
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 4.3e-90 335.5 230 73.0
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 5.7e-90 335.1 226 72.1
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 7.4e-90 334.7 230 71.3
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 1.6e-89 333.6 225 73.3
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 2.2e-89 333.2 220 70.5
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 2.2e-89 333.2 225 72.0
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 4.8e-89 332.0 245 67.3
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 6.3e-89 331.6 222 73.0
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 8.2e-89 331.3 240 67.9
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 1.1e-88 330.9 214 74.8
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 1.1e-88 330.9 213 74.2
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 1.4e-88 330.5 223 70.9
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 1.4e-88 330.5 230 68.7
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 1.4e-88 330.5 245 66.9
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 1.4e-88 330.5 255 63.9
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 2.4e-88 329.7 244 68.4
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 2.4e-88 329.7 244 67.2
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 3.1e-88 329.3 216 72.7
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 4.1e-88 328.9 214 74.3
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 4.1e-88 328.9 216 73.6
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 4.1e-88 328.9 227 71.4
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 5.3e-88 328.6 231 70.1
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 5.3e-88 328.6 240 68.8
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 5.3e-88 328.6 227 71.4
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 5.3e-88 328.6 213 73.2
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 9.0e-88 327.8 214 73.8
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.2e-87 327.4 235 68.9
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 1.2e-87 327.4 228 71.1
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 1.5e-87 327.0 226 71.2
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 3.4e-87 325.9 228 70.2
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 4.5e-87 325.5 244 66.0
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 5.9e-87 325.1 246 67.9
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 5.9e-87 325.1 239 67.4
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 5.9e-87 325.1 234 67.1
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 7.7e-87 324.7 218 73.9
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 1.7e-86 323.6 253 66.8
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 1.7e-86 323.6 242 68.2
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 2.9e-86 322.8 227 68.7
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 3.8e-86 322.4 228 69.7
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 3.8e-86 322.4 218 72.5
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 3.8e-86 322.4 225 71.1
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 1.1e-85 320.9 240 65.8
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 1.9e-85 320.1 219 71.7
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 2.5e-85 319.7 227 67.4
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 2.5e-85 319.7 216 72.2
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 3.2e-85 319.3 216 72.7
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 4.2e-85 318.9 218 72.0
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 9.4e-85 317.8 227 70.9
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 1.2e-84 317.4 218 70.2
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 2.7e-84 316.2 241 65.1
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 1.0e-83 314.3 214 70.1
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 1.8e-83 313.5 216 70.8
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 2.3e-83 313.2 242 64.0
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 5.1e-83 312.0 225 68.0
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 5.1e-83 312.0 246 63.8
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 6.7e-83 311.6 216 70.4
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 1.1e-82 310.8 218 70.2
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 2.5e-82 309.7 221 69.2
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 2.5e-82 309.7 242 63.6
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 4.3e-82 308.9 230 67.4
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 5.7e-82 308.5 245 63.7
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 1.7e-81 307.0 219 68.9
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 2.2e-81 306.6 246 63.0
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 2.8e-81 306.2 217 70.0
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 3.7e-81 305.8 228 65.4
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 3.7e-81 305.8 225 65.8
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 3.7e-81 305.8 241 63.5
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 8.2e-81 304.7 219 68.0
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 1.1e-80 304.3 252 61.9
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 1.4e-80 303.9 228 64.9
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 3.1e-80 302.8 225 63.6
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 5.9e-79 298.5 228 63.2
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 6.5e-78 295.0 215 67.4
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 1.9e-77 293.5 213 64.8
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 1.9e-77 293.5 239 59.8
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 1.2e-76 290.8 219 64.4
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 2.1e-76 290.0 232 60.8
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 3.9e-75 285.8 246 58.9
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 2.2e-73 280.0 217 61.3
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 6.3e-73 278.5 210 63.8
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 8.2e-73 278.1 244 57.8
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 2.4e-72 276.6 236 58.5
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 8.5e-70 268.1 249 55.4
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 9.4e-69 264.6 242 55.4
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 2.3e-67 260.0 231 57.1
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 8.8e-67 258.1 179 69.3
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 2.7e-63 246.5 219 59.4
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 9.8e-58 228.0 190 58.9
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 7.2e-53 211.8 168 61.9
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 3.3e-45 186.4 220 46.8
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 2.9e-41 173.3 162 58.0
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 3.2e-40 169.9 144 58.3
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 2.7e-39 166.8 105 73.3
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 2.6e-34 150.2 115 64.3
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 1.1e-32 144.8 174 44.8
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 3.6e-28 129.8 198 38.9
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 1.7e-25 120.9 109 55.0
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 1.2e-10 71.6 56 60.7
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 1.6e-07 61.2 47 57.4


User provided reference genes

Program Settings