Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 1.7e-73 279.3 141 100.0
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 1.7e-73 279.3 141 100.0
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 4.6e-71 271.2 141 97.2
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 1.5e-69 266.2 141 94.3
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 5.6e-69 264.2 141 93.6
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 1.9e-61 239.2 144 85.4
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 2.5e-61 238.8 143 84.6
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 3.2e-56 221.9 144 79.9
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 3.2e-56 221.9 144 79.9
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 3.2e-56 221.9 144 79.9
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 3.2e-56 221.9 144 81.2
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 9.3e-56 220.3 143 81.1
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 1.6e-55 219.5 145 79.3
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 1.3e-54 216.5 143 80.4
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 3.9e-54 214.9 143 78.3
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 6.7e-54 214.2 144 79.2
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 1.9e-53 212.6 144 79.9
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 1.6e-47 193.0 124 82.3
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 2.2e-41 172.6 144 66.0
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 3.3e-37 158.7 141 56.7
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.4e-35 153.3 142 58.5
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.3e-33 146.7 142 56.3
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 6.1e-15 84.7 83 53.0
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 3.0e-14 82.4 95 48.4
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 5.2e-14 81.6 107 45.8
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 2.6e-13 79.3 125 39.2
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 3.3e-13 79.0 100 46.0
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 4.4e-13 78.6 87 44.8
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 5.7e-13 78.2 140 38.6
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 7.4e-13 77.8 100 47.0
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 7.4e-13 77.8 140 40.0
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 9.7e-13 77.4 115 40.0
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 9.7e-13 77.4 115 41.7
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.7e-12 76.6 87 47.1
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.2e-12 76.3 73 47.9
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 2.2e-12 76.3 69 53.6
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 2.8e-12 75.9 120 40.8
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 3.7e-12 75.5 113 39.8
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 3.7e-12 75.5 80 46.2
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 4.8e-12 75.1 100 42.0
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 4.8e-12 75.1 84 46.4
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 6.3e-12 74.7 137 34.3
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 6.3e-12 74.7 117 39.3
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 8.2e-12 74.3 110 44.5
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 1.4e-11 73.6 107 42.1
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.8e-11 73.2 88 53.4
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 2.4e-11 72.8 79 46.8
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 3.1e-11 72.4 107 43.0
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 3.1e-11 72.4 85 40.0
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 4.1e-11 72.0 88 52.3
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 4.1e-11 72.0 67 49.3
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 5.3e-11 71.6 106 42.5
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 5.3e-11 71.6 84 44.0
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 7.0e-11 71.2 79 46.8
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 7.0e-11 71.2 92 44.6
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 7.0e-11 71.2 92 44.6
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 7.0e-11 71.2 92 45.7
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 9.1e-11 70.9 92 44.6
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 9.1e-11 70.9 92 44.6
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 9.1e-11 70.9 102 45.1
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 9.1e-11 70.9 102 45.1
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 9.1e-11 70.9 111 38.7
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 9.1e-11 70.9 94 39.4
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.2e-10 70.5 100 37.0
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 1.6e-10 70.1 130 36.9
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.6e-10 70.1 92 44.6
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 1.6e-10 70.1 103 44.7
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 1.6e-10 70.1 105 41.9
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 1.6e-10 70.1 104 41.3
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 2.0e-10 69.7 89 40.4
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 2.0e-10 69.7 95 41.1
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 2.6e-10 69.3 107 38.3
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 3.5e-10 68.9 107 37.4
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 3.5e-10 68.9 85 42.4
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 4.5e-10 68.6 81 43.2
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 1.0e-09 67.4 116 41.4
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 1.0e-09 67.4 121 38.8
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 1.7e-09 66.6 116 37.1
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.7e-09 66.6 90 45.6
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 1.7e-09 66.6 72 50.0
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 2.2e-09 66.2 79 48.1
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 2.2e-09 66.2 58 56.9
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 2.2e-09 66.2 65 47.7
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.2e-09 66.2 84 44.0
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 2.2e-09 66.2 100 39.0
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 2.2e-09 66.2 88 37.5
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 2.2e-09 66.2 90 40.0
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 2.9e-09 65.9 135 35.6
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 2.9e-09 65.9 119 36.1
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 3.8e-09 65.5 107 40.2
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 5.0e-09 65.1 95 43.2
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 5.0e-09 65.1 84 40.5
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 6.5e-09 64.7 100 41.0
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 6.5e-09 64.7 54 51.9
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 6.5e-09 64.7 70 51.4
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 8.5e-09 64.3 108 38.0
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 8.5e-09 64.3 67 44.8
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 1.1e-08 63.9 53 56.6
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 1.5e-08 63.5 118 36.4
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 1.9e-08 63.2 115 36.5
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.9e-08 63.2 107 39.3
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.5e-08 62.8 107 39.3
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 3.2e-08 62.4 78 46.2
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 5.5e-08 61.6 64 48.4
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 5.5e-08 61.6 80 41.2
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 1.2e-07 60.5 115 37.4
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 1.2e-07 60.5 80 45.0
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 1.2e-07 60.5 111 38.7
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 1.2e-07 60.5 55 47.3
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 1.2e-07 60.5 55 47.3
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 1.2e-07 60.5 89 42.7
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 1.6e-07 60.1 108 38.9
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 1.6e-07 60.1 64 51.6
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 1.6e-07 60.1 116 32.8
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 2.1e-07 59.7 118 33.1
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 2.1e-07 59.7 79 44.3
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 2.7e-07 59.3 62 50.0
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 6.1e-07 58.2 42 54.8
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 8.0e-07 57.8 42 64.3
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 1.0e-06 57.4 75 38.7
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 1.4e-06 57.0 82 41.5
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 1.4e-06 57.0 53 49.1
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 1.8e-06 56.6 103 37.9
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 1.8e-06 56.6 127 32.3
Os02g0782900 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 1.8e-06 56.6 66 45.5
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 2.3e-06 56.2 118 33.1
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 3.0e-06 55.8 74 40.5
Zm00001eb203790 Zea mays HOM05D005200 ORTHO05D005760 3.0e-06 55.8 31 71.0
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 4.0e-06 55.5 116 33.6
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 6.7e-06 54.7 104 42.3


User provided reference genes

Program Settings