Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p49400 Brassica napus HOM05D008621 ORTHO05D010242 9.6e-184 646.7 336 100.0
BcaC09g48475 Brassica carinata HOM05D008621 ORTHO05D010242 3.4e-181 638.3 336 98.8
BolC1t04897H Brassica oleracea HOM05D008621 ORTHO05D010242 3.4e-181 638.3 336 98.8
A01p38850 Brassica napus HOM05D008621 ORTHO05D010242 3.0e-169 598.6 337 93.5
BraA01t03931Z Brassica rapa HOM05D008621 ORTHO05D010242 5.8e-165 584.3 332 92.8
BcaB04g20947 Brassica carinata HOM05D008621 ORTHO05D010242 6.7e-161 570.9 337 89.0
Thhalv10021100m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 3.9e-145 518.5 339 82.9
AT3G15115 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 3.2e-131 472.2 344 77.6
CARHR090090 Cardamine hirsuta HOM05D008621 ORTHO05D010242 2.3e-129 466.1 343 76.7
BraA05t22253Z Brassica rapa HOM05D008621 ORTHO05D010242 1.0e-124 450.7 341 76.8
AL3G27470 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 8.5e-124 447.6 342 75.1
C05p52100 Brassica napus HOM05D008621 ORTHO05D010242 8.8e-121 437.6 339 74.0
A05p34320 Brassica napus HOM05D008621 ORTHO05D010242 1.7e-116 423.3 341 73.6
BcaB06g29537 Brassica carinata HOM05D008621 ORTHO05D010242 2.1e-114 416.4 338 71.6
Sp3g13320 Schrenkiella parvula HOM05D008621 ORTHO05D010242 4.7e-114 415.2 304 75.3
Carub.0003s1476 Capsella rubella HOM05D008621 ORTHO05D010242 2.0e-93 346.7 234 82.9
Aa31LG8G2330 Aethionema arabicum HOM05D008621 ORTHO05D010242 4.1e-86 322.4 341 61.0
BolC5t33895H Brassica oleracea HOM05D008621 ORTHO05D010242 1.8e-81 307.0 238 76.5
THA.LOC104810457 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 7.9e-53 211.8 336 44.9
AT1G53180 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 3.5e-45 186.4 408 39.7
AL1G61580 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 1.9e-43 180.6 388 39.9
Thhalv10011625m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 4.3e-43 179.5 384 40.1
Sp1g39760 Schrenkiella parvula HOM05D008621 ORTHO05D010242 6.2e-42 175.6 387 38.8
Carub.0001s4237 Capsella rubella HOM05D008621 ORTHO05D010242 3.1e-41 173.3 394 39.3
BcaB04g17107 Brassica carinata HOM05D008621 ORTHO05D010242 6.9e-41 172.2 385 38.2
THA.LOC104798755 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 4.5e-40 169.5 338 40.2
A08p01770 Brassica napus HOM05D008621 ORTHO05D010242 5.0e-39 166.0 389 39.8
BcaB02g10936 Brassica carinata HOM05D008621 ORTHO05D010242 6.5e-39 165.6 383 38.1
BcaC08g44053 Brassica carinata HOM05D008621 ORTHO05D010242 1.1e-38 164.9 392 38.8
C03p91210 Brassica napus HOM05D008621 ORTHO05D010242 1.1e-38 164.9 388 39.9
BolC6t36635H Brassica oleracea HOM05D008621 ORTHO05D010242 1.1e-38 164.9 392 38.8
BraA05t20746Z Brassica rapa HOM05D008621 ORTHO05D010242 9.3e-38 161.8 393 38.7
C06p14570 Brassica napus HOM05D008621 ORTHO05D010242 1.2e-37 161.4 392 38.0
A05p18520 Brassica napus HOM05D008621 ORTHO05D010242 4.6e-37 159.5 393 37.9
BolC3t21434H Brassica oleracea HOM05D008621 ORTHO05D010242 4.6e-37 159.5 390 39.0
BcaC01g01366 Brassica carinata HOM05D008621 ORTHO05D010242 7.4e-35 152.1 389 37.0
CARHR043410 Cardamine hirsuta HOM05D008621 ORTHO05D010242 2.9e-31 140.2 285 41.8
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 9.7e-27 125.2 353 34.8
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 1.8e-25 120.9 330 35.5
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 6.9e-25 119.0 352 34.1
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 1.1e-22 111.7 343 34.1
Aa31LG10G1950 Aethionema arabicum HOM05D008621 ORTHO05D010242 2.5e-22 110.5 446 29.1
Potri.001G372800 Populus trichocarpa HOM05D008621 ORTHO05D010242 6.7e-20 102.4 349 31.8
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 2.0e-19 100.9 360 30.8
Manes.03G104500 Manihot esculenta HOM05D008621 ORTHO05D010242 7.4e-19 99.0 334 29.9
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 2.8e-18 97.1 351 32.8
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 8.2e-18 95.5 350 33.7
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 1.1e-17 95.1 340 32.1
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 1.1e-17 95.1 334 29.0
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 1.4e-17 94.7 359 30.4
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 3.1e-17 93.6 348 32.2
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 3.1e-17 93.6 348 31.6
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 7.0e-17 92.4 343 32.7
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 4.5e-16 89.7 348 32.2
Manes.15G090300 Manihot esculenta HOM05D008621 ORTHO05D010242 1.7e-15 87.8 359 28.7
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 5.0e-15 86.3 367 29.2
Sabra16G0245400 Salix brachista HOM05D008621 ORTHO05D010242 1.5e-14 84.7 339 31.9
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 2.7e-13 80.5 359 30.6
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 3.6e-13 80.1 360 29.7
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 4.7e-13 79.7 350 30.9
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 8.0e-13 79.0 365 29.3
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 2.3e-12 77.4 352 29.8
FAN16G1511 Fragaria x ananassa HOM05D001501 ORTHO05D001329 3.0e-12 77.0 349 31.8
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 5.2e-12 76.3 354 29.1
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 8.8e-12 75.5 358 30.7
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 8.8e-12 75.5 347 30.0
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 8.8e-12 75.5 352 28.7
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 1.1e-11 75.1 381 29.4
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 2.6e-11 73.9 346 31.2
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 1.3e-10 71.6 345 29.3
FAN21G4066 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.7e-10 71.2 343 31.5
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 1.7e-10 71.2 372 27.2
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 2.8e-10 70.5 344 28.8
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 4.8e-10 69.7 206 35.0
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 8.2e-10 68.9 143 41.3
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.8e-09 67.8 345 28.1
HanXRQChr10g0302501 Helianthus annuus HOM05D016023 ORTHO05D010242 2.4e-09 67.4 336 25.9
RcHm_v2.0_Chr5g0032271 Rosa chinensis HOM05D001501 ORTHO05D001329 3.1e-09 67.0 349 32.4
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 7.0e-09 65.9 142 40.8
FvH4_3g19190 Fragaria vesca HOM05D001501 ORTHO05D001329 1.2e-08 65.1 348 29.9
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 2.0e-08 64.3 356 28.4
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 3.5e-08 63.5 355 27.9
Nitab4.5_0000246g0060 Nicotiana tabacum HOM05D010484 ORTHO05D010242 5.9e-08 62.8 322 28.3
FAN25G3082 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.3e-07 61.6 351 31.1
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 2.2e-07 60.8 226 31.9
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 2.2e-07 60.8 205 33.2
Peaxi162Scf00069g01925 Petunia axillaris HOM05D010484 ORTHO05D010242 3.8e-07 60.1 333 27.0
Nitab4.5_0000831g0120 Nicotiana tabacum HOM05D010484 ORTHO05D010242 5.0e-07 59.7 322 27.6
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 6.5e-07 59.3 351 29.3
ClCG05G009220 Citrullus lanatus HOM05D001501 ORTHO05D001329 8.5e-07 58.9 301 28.2
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 8.5e-07 58.9 326 27.0
PGR031G3944 Punica granatum HOM05D001501 ORTHO05D001329 1.5e-06 58.2 367 27.2
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 1.5e-06 58.2 180 32.2
CsaV3_3G019560 Cucumis sativus L. HOM05D001501 ORTHO05D001329 3.2e-06 57.0 265 29.1
FAN11G0392 Fragaria x ananassa HOM05D001501 ORTHO05D001329 3.2e-06 57.0 347 30.0
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 3.2e-06 57.0 324 27.2
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 3.2e-06 57.0 235 31.1
CANSAT35G0828 Cannabis sativa HOM05D001501 ORTHO05D001329 4.2e-06 56.6 367 26.7


User provided reference genes

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