Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p49070 Brassica napus HOM05D003356 ORTHO05D019431 1.7e-142 509.2 242 100.0
BolC1t04870H Brassica oleracea HOM05D003356 ORTHO05D019431 3.1e-91 339.0 256 71.1
BraA01t03913Z Brassica rapa HOM05D003356 ORTHO05D019431 2.7e-26 123.2 249 40.2
BcaB06g29569 Brassica carinata HOM05D003356 ORTHO05D004362 5.5e-24 115.5 95 65.3
A05p34020 Brassica napus HOM05D003356 ORTHO05D004362 5.5e-24 115.5 95 65.3
BraA05t22224Z Brassica rapa HOM05D003356 ORTHO05D004362 5.5e-24 115.5 95 65.3
Thhalv10020171m.g Eutrema salsugineum HOM05D003356 ORTHO05D004362 7.2e-24 115.2 95 64.2
Sp3g13630 Schrenkiella parvula HOM05D003356 ORTHO05D004362 9.4e-24 114.8 95 64.2
AL3G27880 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 1.2e-23 114.4 95 63.2
AT3G15380 Arabidopsis thaliana HOM05D003356 ORTHO05D004362 1.2e-23 114.4 95 63.2
CARHR090420 Cardamine hirsuta HOM05D003356 ORTHO05D004362 1.2e-23 114.4 95 63.2
BcaC05g28976 Brassica carinata HOM05D003356 ORTHO05D004362 1.6e-23 114.0 95 64.2
C05p51790 Brassica napus HOM05D003356 ORTHO05D004362 1.6e-23 114.0 95 64.2
BolC5t33865H Brassica oleracea HOM05D003356 ORTHO05D004362 1.6e-23 114.0 95 64.2
A03p39290 Brassica napus HOM05D003356 ORTHO05D004362 2.7e-23 113.2 95 62.1
C03p47660 Brassica napus HOM05D003356 ORTHO05D004362 2.7e-23 113.2 95 62.1
BolC3t17043H Brassica oleracea HOM05D003356 ORTHO05D004362 2.7e-23 113.2 95 62.1
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 2.7e-23 113.2 95 62.1
Aa31LG8G2610 Aethionema arabicum HOM05D003356 ORTHO05D004362 6.1e-23 112.1 95 62.1
Carub.0003s1510 Capsella rubella HOM05D003356 ORTHO05D004362 1.8e-22 110.5 95 62.1
A01p38720 Brassica napus HOM05D003356 ORTHO05D019431 2.3e-22 110.2 56 94.6
Sabra11G0105100 Salix brachista HOM05D003356 ORTHO05D004362 2.3e-22 110.2 95 58.9
Cpa.g.sc80.47 Carica papaya HOM05D003356 ORTHO05D004362 3.0e-22 109.8 95 58.9
THA.LOC104818067 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 6.8e-22 108.6 95 57.9
BcaC01g03876 Brassica carinata HOM05D003356 ORTHO05D004362 8.8e-22 108.2 91 61.5
QL08p020494 Quercus lobata HOM05D003356 ORTHO05D004362 8.8e-22 108.2 95 57.9
Atru.chr2.2711 Acer truncatum HOM05D003356 ORTHO05D004362 1.2e-21 107.8 95 57.9
Aqoxy4G00927 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 1.5e-21 107.5 95 55.8
THA.LOC104810480 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 1.5e-21 107.5 95 58.9
Aqoxy1G02485 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 2.0e-21 107.1 95 56.8
COL.COLO4_09421 Corchorus olitorius HOM05D003356 ORTHO05D004362 2.0e-21 107.1 95 55.8
Dinv07551 Davidia involucrata HOM05D003356 ORTHO05D004362 2.0e-21 107.1 95 54.7
TWI39G1274 Tripterygium wilfordii HOM05D003356 ORTHO05D004362 2.0e-21 107.1 95 55.8
Cfa020557 Carpinus fangiana HOM05D003356 ORTHO05D004362 2.6e-21 106.7 95 55.8
CiPaw.11G172300 Carya illinoinensis HOM05D003356 ORTHO05D004362 2.6e-21 106.7 95 55.8
ClCG11G018140 Citrullus lanatus HOM05D003356 ORTHO05D004362 2.6e-21 106.7 70 70.0
Gohir.A11G283100 Gossypium hirsutum HOM05D003356 ORTHO05D004362 2.6e-21 106.7 95 55.8
Gohir.D11G296752 Gossypium hirsutum HOM05D003356 ORTHO05D004362 2.6e-21 106.7 95 55.8
Gorai.007G321200 Gossypium raimondii HOM05D003356 ORTHO05D004362 2.6e-21 106.7 95 55.8
Prupe.4G183900 Prunus persica HOM05D003356 ORTHO05D004362 2.6e-21 106.7 95 55.8
TAR626G0399 Trochodendron aralioides HOM05D003356 ORTHO05D004362 2.6e-21 106.7 95 55.8
Haze_09456 Corylus avellana HOM05D003356 ORTHO05D004362 3.4e-21 106.3 95 54.7
Glyma.12G150800 Glycine max HOM05D003356 ORTHO05D004362 3.4e-21 106.3 95 54.7
Nn1g06580 Nelumbo nucifera HOM05D003356 ORTHO05D004362 3.4e-21 106.3 95 55.8
DCAR_019547 Daucus carota HOM05D003356 ORTHO05D004362 4.4e-21 105.9 95 54.7
Lsat_1_v5_gn_7_105200 Lactuca sativa HOM05D003356 ORTHO05D004362 4.4e-21 105.9 95 55.8
Ciclev10007637m.g Citrus clementina HOM05D003356 ORTHO05D004362 5.7e-21 105.5 95 54.7
ECA236G2009 Erigeron canadensis HOM05D003356 ORTHO05D004362 5.7e-21 105.5 95 54.7
Potri.011G121100 Populus trichocarpa HOM05D003356 ORTHO05D004362 5.7e-21 105.5 95 56.8
CANSAT56G0567 Cannabis sativa HOM05D003356 ORTHO05D004362 7.5e-21 105.1 95 55.8
Medtr8g059125 Medicago truncatula HOM05D003356 ORTHO05D004362 7.5e-21 105.1 95 53.7
Psat4g135280 Pisum sativum HOM05D003356 ORTHO05D004362 7.5e-21 105.1 95 53.7
VMungo1127G2063 Vigna mungo HOM05D003356 ORTHO05D004362 7.5e-21 105.1 95 53.7
GSVIVG01014366001 Vitis vinifera HOM05D003356 ORTHO05D004362 7.5e-21 105.1 95 54.7
arahy.Tifrunner.gnm1.ann1.YA7R1N Arachis hypogaea HOM05D003356 ORTHO05D004362 9.8e-21 104.8 95 53.7
arahy.Tifrunner.gnm1.ann1.YHI9TY Arachis hypogaea HOM05D003356 ORTHO05D004362 9.8e-21 104.8 95 53.7
Ca_20647_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 9.8e-21 104.8 95 52.6
Dinv08305 Davidia involucrata HOM05D003356 ORTHO05D004362 9.8e-21 104.8 95 53.7
Lalb_Chr19g0134281 Lupinus albus HOM05D003356 ORTHO05D004362 9.8e-21 104.8 95 52.6
MD03G1225500 Malus domestica HOM05D003356 ORTHO05D004362 9.8e-21 104.8 95 54.7
Eucgr.F01103 Eucalyptus grandis HOM05D003356 ORTHO05D004362 1.3e-20 104.4 95 53.7
HanXRQChr15g0494641 Helianthus annuus HOM05D003356 ORTHO05D004362 1.3e-20 104.4 95 54.7
Cc05_g12200 Coffea canephora HOM05D003356 ORTHO05D004362 1.7e-20 104.0 95 51.6
Migut.M00849 Erythranthe guttata HOM05D003356 ORTHO05D004362 1.7e-20 104.0 95 53.7
Lj1A846T66 Lonicera japonica HOM05D003356 ORTHO05D004362 1.7e-20 104.0 95 52.6
Manes.03G112000 Manihot esculenta HOM05D003356 ORTHO05D004362 1.7e-20 104.0 95 53.7
Os04g0681400 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 2.2e-20 103.6 95 53.7
Os04g0681600 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 2.2e-20 103.6 95 53.7
Thecc.07G080500 Theobroma cacao HOM05D003356 ORTHO05D004362 2.2e-20 103.6 95 54.7
BcaC09g48503 Brassica carinata HOM05D003356 ORTHO05D019431 2.8e-20 103.2 78 73.1
Hma1.2p1_0148F.1_g066130 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 2.8e-20 103.2 95 53.7
Lalb_Chr01g0006491 Lupinus albus HOM05D003356 ORTHO05D004362 2.8e-20 103.2 95 52.6
MSTRG.15221 Avicennia marina HOM05D003356 ORTHO05D004362 3.7e-20 102.8 95 53.7
Phvul.005G082401 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 3.7e-20 102.8 95 53.7
Phvul.011G150000 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 3.7e-20 102.8 95 52.6
Rhsim04G0020100 Rhododendron simsii HOM05D003356 ORTHO05D004362 3.7e-20 102.8 95 52.6
SGA_v2.0_scaffold34G13734 Striga asiatica HOM05D003356 ORTHO05D004362 3.7e-20 102.8 95 52.6
SGA_v2.0_scaffold73G24287 Striga asiatica HOM05D003356 ORTHO05D004362 3.7e-20 102.8 95 52.6
CSS0019237 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 4.8e-20 102.4 95 53.7
FvH4_3g20420 Fragaria vesca HOM05D003356 ORTHO05D004362 4.8e-20 102.4 92 54.3
Glyma.06G246600 Glycine max HOM05D003356 ORTHO05D004362 4.8e-20 102.4 95 51.6
arahy.Tifrunner.gnm1.ann1.1CAS5W Arachis hypogaea HOM05D003356 ORTHO05D004362 6.3e-20 102.1 95 51.6
arahy.Tifrunner.gnm1.ann1.4T1P38 Arachis hypogaea HOM05D003356 ORTHO05D004362 6.3e-20 102.1 95 51.6
MD11G1246200 Malus domestica HOM05D003356 ORTHO05D004362 6.3e-20 102.1 95 51.6
VMungo1080G1275 Vigna mungo HOM05D003356 ORTHO05D004362 6.3e-20 102.1 95 53.7
HanXRQChr11g0328451 Helianthus annuus HOM05D003356 ORTHO05D004362 8.3e-20 101.7 92 54.3
Hma1.2p1_0881F.1_g232075 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 8.3e-20 101.7 95 53.7
PGR083G2041 Punica granatum HOM05D003356 ORTHO05D004362 8.3e-20 101.7 95 52.6
CDE04G3674 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 1.1e-19 101.3 90 52.2
Gohir.A01G065000 Gossypium hirsutum HOM05D003356 ORTHO05D004362 1.1e-19 101.3 95 52.6
TPR.G31511 Trifolium pratense HOM05D003356 ORTHO05D004362 1.1e-19 101.3 95 51.6
unitig_37.g12574 Utricularia gibba HOM05D003356 ORTHO05D004362 1.1e-19 101.3 95 50.5
Dinv04314 Davidia involucrata HOM05D003356 ORTHO05D004362 1.4e-19 100.9 93 52.7
Gorai.002G072200 Gossypium raimondii HOM05D003356 ORTHO05D004362 1.4e-19 100.9 95 51.6
Lj3g0021569 Lotus japonicus HOM05D003356 ORTHO05D004362 1.4e-19 100.9 95 51.6
PSO675G9024 Papaver somniferum HOM05D003356 ORTHO05D004362 1.4e-19 100.9 95 53.7
MBI17_g30525_MAGBIO Magnolia biondii HOM05D003356 ORTHO05D004362 1.8e-19 100.5 93 52.7
Manes.15G086100 Manihot esculenta HOM05D003356 ORTHO05D004362 1.8e-19 100.5 95 51.6
SalBow2G3561 Salvia bowleyana HOM05D003356 ORTHO05D004362 1.8e-19 100.5 95 50.5
Actinidia35254 Actinidia chinensis HOM05D003356 ORTHO05D004362 2.4e-19 100.1 95 51.6
CDE06G0677 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 2.4e-19 100.1 95 50.5
CsaV3_4G033780 Cucumis sativus L. HOM05D003356 ORTHO05D004362 2.4e-19 100.1 93 54.8
Glyma.12G223200 Glycine max HOM05D003356 ORTHO05D004362 2.4e-19 100.1 95 51.6
TAR624G0482 Trochodendron aralioides HOM05D003356 ORTHO05D004362 2.4e-19 100.1 95 53.7
MSTRG.6840 Avicennia marina HOM05D003356 ORTHO05D004362 3.1e-19 99.8 95 51.6
Gohir.D01G052400 Gossypium hirsutum HOM05D003356 ORTHO05D004362 3.1e-19 99.8 95 50.5
vmacro11852 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 4.1e-19 99.4 95 50.5
Zm00001eb065890 Zea mays HOM05D003356 ORTHO05D004362 4.1e-19 99.4 95 48.4
CSS0023849 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 5.4e-19 99.0 95 51.6
PSO541G1226 Papaver somniferum HOM05D003356 ORTHO05D004362 5.4e-19 99.0 95 52.6
Actinidia05623 Actinidia chinensis HOM05D003356 ORTHO05D004362 7.0e-19 98.6 95 50.5
Lj8C157T5 Lonicera japonica HOM05D003356 ORTHO05D004362 7.0e-19 98.6 94 51.1
Lj3g0006216 Lotus japonicus HOM05D003356 ORTHO05D004362 7.0e-19 98.6 95 49.5
Lalb_Chr25g0286471 Lupinus albus HOM05D003356 ORTHO05D004362 7.0e-19 98.6 95 50.5
Medtr2g079490 Medicago truncatula HOM05D003356 ORTHO05D004362 7.0e-19 98.6 95 51.6
Rhsim06G0197100 Rhododendron simsii HOM05D003356 ORTHO05D004362 7.0e-19 98.6 95 50.5
Zm00001eb198690 Zea mays HOM05D003356 ORTHO05D004362 1.2e-18 97.8 95 50.5
CSS0014763 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 1.6e-18 97.4 95 48.4
Oeu005419.1 Olea europaea HOM05D003356 ORTHO05D004362 1.6e-18 97.4 95 49.5
Ah.04g165130 Amaranthus hybridus HOM05D003356 ORTHO05D004362 2.7e-18 96.7 95 50.5
Ca_01833_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 2.7e-18 96.7 95 48.4
FAN16G2459 Fragaria x ananassa HOM05D003356 ORTHO05D004362 2.7e-18 96.7 99 51.5
Hund22933 Selenicereus undatus HOM05D003356 ORTHO05D004362 2.7e-18 96.7 95 50.5
AUR62034265 Chenopodium quinoa HOM05D003356 ORTHO05D004362 3.5e-18 96.3 95 52.6
RcHm_v2.0_Chr5g0034311 Rosa chinensis HOM05D003356 ORTHO05D004362 3.5e-18 96.3 92 52.2
Sed0005873 Sechium edule HOM05D003356 ORTHO05D004362 3.5e-18 96.3 93 51.6
Lsat_1_v5_gn_7_18881 Lactuca sativa HOM05D003356 ORTHO05D004362 4.5e-18 95.9 95 49.5
Psat5g244680 Pisum sativum HOM05D003356 ORTHO05D004362 4.5e-18 95.9 95 48.4
Sc03g0009930 Simmondsia chinensis HOM05D003356 ORTHO05D004362 4.5e-18 95.9 95 48.4
Glyma.13G278300 Glycine max HOM05D003356 ORTHO05D004362 7.7e-18 95.1 95 49.5
DCAR_004079 Daucus carota HOM05D003356 ORTHO05D004362 1.0e-17 94.7 95 48.4
Actinidia01887 Actinidia chinensis HOM05D003356 ORTHO05D004362 1.3e-17 94.4 95 49.5
AUR62029372 Chenopodium quinoa HOM05D003356 ORTHO05D004362 1.7e-17 94.0 95 50.5
FAN21G0641 Fragaria x ananassa HOM05D003356 ORTHO05D004362 1.7e-17 94.0 106 48.1
FAN25G0303 Fragaria x ananassa HOM05D003356 ORTHO05D004362 1.7e-17 94.0 106 48.1
Ah.06g183980 Amaranthus hybridus HOM05D003356 ORTHO05D004362 2.2e-17 93.6 95 49.5
Peaxi162Scf00069g01337 Petunia axillaris HOM05D003356 ORTHO05D004362 2.2e-17 93.6 95 49.5
Solyc07g063230.3 Solanum lycopersicum HOM05D003356 ORTHO05D004362 2.9e-17 93.2 95 48.4
Sopen07g031420 Solanum pennellii HOM05D003356 ORTHO05D004362 2.9e-17 93.2 95 48.4
PGSC0003DMG400012423 Solanum tuberosum HOM05D003356 ORTHO05D004362 2.9e-17 93.2 95 48.4
EL10Ac4g08143 Beta vulgaris HOM05D003356 ORTHO05D004362 3.8e-17 92.8 95 48.4
FAN11G2849 Fragaria x ananassa HOM05D003356 ORTHO05D004362 3.8e-17 92.8 106 47.2
CAN.G162.68 Capsicum annuum HOM05D003356 ORTHO05D004362 5.0e-17 92.4 95 48.4
HanXRQChr15g0482461 Helianthus annuus HOM05D003356 ORTHO05D004362 5.0e-17 92.4 95 47.4
ATR0680G284 Amborella trichopoda HOM05D003356 ORTHO05D004362 1.5e-16 90.9 95 47.4
ECA236G4993 Erigeron canadensis HOM05D003356 ORTHO05D004362 1.5e-16 90.9 95 47.4
vmacro09540 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 1.2e-15 87.8 113 41.6
Nitab4.5_0001551g0030 Nicotiana tabacum HOM05D003356 ORTHO05D004362 1.8e-14 84.0 95 46.3
Nitab4.5_0003688g0040 Nicotiana tabacum HOM05D003356 ORTHO05D004362 1.8e-14 84.0 95 46.3
HPP92_020870 Vanilla planifolia HOM05D003356 ORTHO05D004362 9.8e-13 78.2 83 50.6
arahy.Tifrunner.gnm1.ann1.AFV8NH Arachis hypogaea HOM05D003356 ORTHO05D004362 9.2e-11 71.6 65 50.8
Pp3c9_13290 Physcomitrium patens HOM05D003356 ORTHO05D004362 7.7e-10 68.6 92 37.0
SEGI_32695 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 2.9e-09 66.6 48 60.4
BcaB04g19328 Brassica carinata HOM05D003356 ORTHO05D019431 8.6e-09 65.1 38 81.6
Mapoly0001s0233 Marchantia polymorpha HOM05D003356 ORTHO05D004362 1.1e-08 64.7 95 34.7
AagrBONN_evm.TU.Sc2ySwM_228.601 Anthoceros agrestis HOM05D003356 ORTHO05D004362 2.5e-08 63.5 94 33.0
CBR_g50441 Chara braunii HOM05D003356 ORTHO05D004362 2.5e-08 63.5 95 37.9
Pp3c13_16790 Physcomitrium patens HOM05D003356 ORTHO05D004362 5.6e-08 62.4 92 35.9
Duzib213G0462 Durio zibethinus HOM05D003356 ORTHO05D004362 1.6e-07 60.8 70 45.7
CBR_g34644 Chara braunii HOM05D003356 ORTHO05D004362 4.7e-07 59.3 92 34.8
MELO3C016707.2 Cucumis melo HOM05D003356 ORTHO05D004362 1.8e-06 57.4 122 36.1
Actinidia18762 Actinidia chinensis HOM05D003356 ORTHO05D019431 3.0e-06 56.6 80 36.2


User provided reference genes

Program Settings