Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 0.0e+00 1255.4 681 100.0
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 0.0e+00 1209.1 681 96.8
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 0.0e+00 1157.9 687 93.4
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 0.0e+00 1149.0 687 92.3
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 0.0e+00 1145.6 687 92.4
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 1.9e-303 1045.4 717 79.1
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 5.4e-303 1043.9 700 84.3
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 1.1e-300 1036.2 710 81.5
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 2.2e-296 1021.9 696 80.6
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 4.2e-295 1017.7 687 82.8
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 2.1e-294 1015.4 697 80.3
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 7.9e-294 1013.4 732 77.6
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 1.8e-293 1012.3 731 78.5
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 2.1e-291 1005.4 700 83.3
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 2.8e-291 1005.0 711 79.7
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 4.1e-290 1001.1 705 82.6
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 4.5e-289 997.7 703 80.7
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 3.0e-285 984.9 697 76.8
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 6.9e-282 973.8 693 75.6
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 5.7e-244 847.8 719 67.5
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 9.2e-218 760.8 745 58.7
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 6.6e-208 728.0 726 56.3
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.1e-205 720.7 763 54.0
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 1.8e-205 719.9 754 55.6
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 4.0e-205 718.8 763 53.9
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 7.6e-204 714.5 740 54.9
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.9e-203 711.8 746 55.6
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.9e-202 709.9 727 56.9
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 5.4e-202 708.4 741 55.1
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 1.2e-201 707.2 744 55.2
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 6.0e-201 704.9 738 55.0
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 8.7e-200 701.0 732 56.3
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 8.7e-200 701.0 743 53.8
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 8.7e-200 701.0 732 55.1
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.5e-199 699.5 743 54.4
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.3e-199 699.1 741 54.5
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 5.6e-199 698.4 709 56.7
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 3.1e-197 692.6 759 53.2
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.3e-195 687.2 712 55.2
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 1.1e-194 684.1 797 52.2
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 3.2e-194 682.6 760 53.8
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 2.7e-193 679.5 726 54.5
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 4.6e-193 678.7 765 53.3
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 1.3e-192 677.2 736 53.7
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 8.7e-192 674.5 796 51.3
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 1.9e-191 673.3 753 53.0
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 3.3e-191 672.5 706 55.7
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 3.3e-191 672.5 734 53.4
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 4.3e-191 672.2 698 56.7
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 5.6e-191 671.8 733 53.2
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 7.4e-191 671.4 746 53.2
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 1.4e-189 667.2 721 54.4
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 3.1e-189 666.0 739 53.0
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 9.9e-188 661.0 707 53.7
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 3.8e-187 659.1 717 53.7
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 6.4e-187 658.3 720 54.3
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 9.3e-186 654.4 752 51.9
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 3.9e-184 649.0 816 48.9
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 6.7e-184 648.3 793 50.3
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 3.3e-183 646.0 836 49.9
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 9.6e-183 644.4 821 49.3
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 3.7e-182 642.5 816 49.6
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 6.2e-182 641.7 769 48.8
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 6.2e-182 641.7 840 47.9
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.1e-181 641.0 821 49.1
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 2.6e-180 636.3 724 53.6
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 1.0e-179 634.4 757 52.0
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.7e-179 633.6 840 47.5
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 2.2e-179 633.3 752 50.1
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 2.9e-179 632.9 738 50.8
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 4.9e-179 632.1 761 49.5
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 4.9e-179 632.1 757 50.5
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 6.5e-179 631.7 640 55.8
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 8.4e-179 631.3 810 48.5
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 5.5e-178 628.6 818 47.4
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.7e-177 626.3 797 48.9
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 2.7e-177 626.3 729 50.5
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.0e-176 624.4 731 50.8
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.8e-176 623.6 755 49.9
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 8.7e-176 621.3 754 49.1
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.5e-175 620.5 771 49.4
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.5e-175 620.5 696 51.9
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 6.3e-174 615.1 710 50.7
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 1.1e-173 614.4 688 52.8
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.4e-173 614.0 770 48.1
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 5.3e-173 612.1 818 46.0
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 1.5e-172 610.5 794 48.5
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 2.0e-172 610.1 698 51.7
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.6e-172 609.8 753 48.9
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 3.4e-172 609.4 743 49.9
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 3.5e-169 599.4 717 50.9
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 2.3e-168 596.7 823 47.0
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 3.9e-168 595.9 723 50.2
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 4.3e-167 592.4 634 53.2
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 7.4e-167 591.7 588 55.4
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 7.4e-167 591.7 736 49.0
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 2.2e-166 590.1 674 50.3
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 5.9e-164 582.0 696 52.3
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.0e-163 581.3 760 47.0
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 5.0e-163 578.9 819 46.6
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.2e-161 574.3 714 51.1
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 2.7e-161 573.2 746 49.1
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 4.6e-161 572.4 703 50.2
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 2.4e-157 560.1 808 44.1
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 9.4e-154 548.1 744 47.4
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.1e-151 541.2 850 42.2
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 4.4e-151 539.3 707 47.9
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.4e-149 534.3 431 63.6
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.0e-147 528.1 683 46.3
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 2.6e-143 513.5 617 49.4
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.1e-137 493.8 435 58.4
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 1.2e-135 488.0 707 45.4
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 6.3e-134 482.3 821 40.3
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 7.0e-133 478.8 599 46.9
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 7.0e-133 478.8 838 38.7
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 5.9e-132 475.7 839 38.9
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.7e-126 457.6 713 41.0
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 2.6e-119 433.7 691 43.0
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 1.7e-118 431.0 474 51.1
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 4.6e-108 396.4 740 38.0
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.2e-101 373.6 646 38.2
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.6e-97 361.3 551 40.7
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 4.2e-85 320.1 541 37.7
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.2e-84 318.5 481 39.1
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.1e-82 312.0 482 39.2
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.8e-80 304.7 304 53.9
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.4e-80 304.3 551 37.2
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.6e-79 300.8 727 35.2
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.4e-77 293.1 439 39.9
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.6e-76 291.6 479 37.6
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.6e-76 291.6 479 37.6
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.1e-75 286.6 465 38.1
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.8e-72 278.1 483 37.1
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.5e-66 258.5 491 35.2
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.7e-57 227.3 523 37.9
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 4.5e-55 220.3 573 34.7
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 8.5e-54 216.1 387 40.8
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.5e-50 205.3 189 48.7
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 1.2e-47 195.7 92 97.8
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 7.9e-36 156.4 196 48.0
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 8.3e-17 93.2 71 62.0
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.7e-14 85.5 388 31.2
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 3.6e-12 77.8 79 45.6
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.7e-12 77.4 52 57.7
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 6.8e-11 73.6 53 64.2
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.9e-09 67.4 77 41.6
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 8.3e-09 66.6 49 63.3
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 1.8e-08 65.5 73 43.8
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.8e-08 65.5 73 43.8
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.8e-08 65.5 68 44.1
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 2.3e-06 58.5 115 33.0
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 5.0e-06 57.4 82 41.5


User provided reference genes

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