Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 4.3e-283 977.2 463 100.0
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 2.0e-277 958.4 463 97.8
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 6.0e-277 956.8 463 97.6
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 3.9e-276 954.1 463 98.3
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 3.1e-273 944.5 463 97.6
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 3.6e-258 894.4 453 92.9
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 4.7e-258 894.0 465 91.0
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.8e-257 892.1 453 92.7
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 2.0e-256 888.6 467 90.6
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 2.0e-256 888.6 467 90.1
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 4.9e-255 884.0 453 91.2
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 8.4e-255 883.2 453 90.9
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 9.3e-254 879.8 462 89.8
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 2.7e-253 878.2 453 91.4
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 6.0e-253 877.1 453 91.2
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 6.4e-239 830.5 462 85.5
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.6e-237 825.9 442 86.0
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 5.7e-227 790.8 445 84.0
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 1.8e-212 742.7 438 78.3
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 5.9e-208 727.6 461 74.8
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 7.7e-208 727.2 457 75.9
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 1.7e-207 726.1 462 75.5
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 3.8e-207 724.9 447 77.0
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.1e-206 723.4 468 73.5
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 1.4e-206 723.0 457 75.5
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.5e-206 722.2 447 76.7
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.2e-205 719.9 468 72.9
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.7e-205 718.8 449 77.1
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.3e-204 715.7 457 74.4
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 1.7e-202 709.5 447 75.8
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 2.6e-200 702.2 449 75.9
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.0e-199 700.3 447 74.7
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 2.9e-199 698.7 451 73.4
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 3.8e-199 698.4 452 74.3
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 8.5e-199 697.2 457 73.7
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 1.2e-197 693.3 465 73.1
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 2.1e-197 692.6 450 74.9
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 3.6e-197 691.8 461 73.3
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 3.6e-197 691.8 453 72.4
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 4.7e-197 691.4 443 74.0
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 1.0e-196 690.3 443 74.3
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 5.2e-196 688.0 454 75.3
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 5.2e-196 688.0 438 75.1
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 6.7e-196 687.6 451 72.5
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 6.7e-196 687.6 439 74.9
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 8.8e-196 687.2 442 74.4
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 1.5e-195 686.4 453 72.2
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 4.4e-195 684.9 452 73.5
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 4.4e-195 684.9 435 73.8
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 7.5e-195 684.1 457 73.1
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 7.5e-195 684.1 439 74.0
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.7e-195 683.7 442 75.1
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 9.7e-195 683.7 440 74.5
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 9.7e-195 683.7 437 75.5
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 1.7e-194 682.9 447 73.8
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 1.7e-194 682.9 437 73.9
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 2.2e-194 682.6 447 73.6
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 2.8e-194 682.2 456 72.1
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 6.3e-194 681.0 453 73.1
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.8e-193 679.5 442 72.6
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.0e-192 676.0 436 73.9
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 2.6e-192 675.6 449 71.7
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 2.6e-192 675.6 433 73.2
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 3.5e-192 675.2 446 72.2
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.5e-192 674.9 445 73.0
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 4.5e-192 674.9 439 74.0
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.3e-191 673.3 434 74.4
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 1.7e-191 672.9 447 72.5
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 2.2e-191 672.5 365 83.6
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.2e-191 672.5 447 72.3
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 2.9e-191 672.2 444 72.3
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 2.9e-191 672.2 445 74.2
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 3.8e-191 671.8 365 83.3
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 3.8e-191 671.8 442 73.3
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 3.8e-191 671.8 437 73.0
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 5.0e-191 671.4 407 76.7
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 6.5e-191 671.0 438 73.1
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 6.5e-191 671.0 436 74.3
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.9e-190 669.5 407 76.4
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 2.5e-190 669.1 489 67.9
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 7.2e-190 667.5 442 72.6
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.2e-189 666.8 438 72.4
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 1.2e-189 666.8 445 72.8
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 6.1e-189 664.5 440 71.6
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 8.0e-189 664.1 459 70.4
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.4e-188 663.3 433 73.2
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 1.4e-188 663.3 441 72.1
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 1.8e-188 662.9 440 72.0
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 4.0e-188 661.8 442 72.4
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 6.8e-188 661.0 436 71.6
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 8.8e-188 660.6 436 72.0
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.5e-187 659.8 447 71.4
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 1.5e-187 659.8 436 71.3
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 7.5e-187 657.5 436 71.1
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 7.5e-187 657.5 444 72.1
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 9.8e-187 657.1 438 72.1
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.7e-186 656.4 435 71.7
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.2e-186 656.0 400 77.2
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 1.4e-185 653.3 447 71.4
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 3.1e-185 652.1 441 70.7
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 5.4e-185 651.4 430 73.0
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 1.2e-181 640.2 385 78.4
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 4.7e-181 638.3 417 72.9
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 1.2e-179 633.6 430 72.1
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 5.7e-179 631.3 444 69.1
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 3.7e-178 628.6 435 71.0
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.9e-178 628.2 435 71.5
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 6.3e-178 627.9 516 61.4
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 1.1e-177 627.1 448 69.0
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 7.0e-177 624.4 380 76.6
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 6.6e-175 617.8 445 67.4
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 3.4e-171 605.5 437 67.3
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.1e-169 600.5 431 68.9
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 1.1e-169 600.5 444 66.2
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 1.8e-169 599.7 439 66.3
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 5.4e-169 598.2 382 72.5
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 2.1e-165 586.3 323 82.7
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 7.0e-161 571.2 323 80.5
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 6.0e-160 568.2 348 76.4
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 1.0e-159 567.4 430 65.8
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 7.5e-155 551.2 379 67.5
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 7.5e-155 551.2 410 65.6
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 7.8e-152 541.2 290 84.5
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 3.0e-151 539.3 290 84.5
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.8e-149 532.7 290 82.1
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.6e-141 506.9 335 67.5
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 2.8e-141 506.1 291 78.0
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 8.1e-141 504.6 344 71.8
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 8.9e-140 501.1 271 85.2
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 7.8e-136 488.0 397 65.0
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 9.9e-131 471.1 310 73.2
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 2.6e-123 446.4 306 70.9
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.3e-119 434.1 387 51.2
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 2.3e-119 433.3 299 72.2
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 4.9e-114 415.6 286 64.3
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 7.6e-107 391.7 343 51.6
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 4.8e-93 345.9 319 52.0
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.1e-92 344.7 276 63.0
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 7.2e-89 332.0 333 48.0
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 4.7e-64 249.6 137 83.9
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 2.0e-62 244.2 180 66.1
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.7e-53 213.4 110 84.5
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.5e-49 200.7 124 73.4
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 4.3e-49 199.9 122 72.1
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.0e-46 191.0 138 61.6
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 6.4e-45 186.0 128 68.0
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.3e-33 147.1 85 78.8
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.5e-33 145.6 85 77.6
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 1.2e-27 128.6 81 72.8
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 3.1e-23 114.0 101 55.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 2.9e-13 80.9 52 69.2
BcaB01g02088 Brassica carinata HOM05D004680 ORTHO05D039099 3.3e-09 67.4 30 93.3
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 2.1e-08 64.7 133 36.1
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 1.1e-07 62.4 112 36.6
SHI25903 Sapria himalayana HOM05D004680 ORTHO05D365905 1.4e-07 62.0 119 35.3


User provided reference genes

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