Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p47110 Brassica napus HOM05D001578 ORTHO05D001207 2.1e-83 312.4 164 100.0
BolC1t04679H Brassica oleracea HOM05D001578 ORTHO05D001207 1.6e-70 269.6 184 81.5
BcaC09g48669 Brassica carinata HOM05D001578 ORTHO05D001207 1.0e-69 266.9 170 86.5
BraA01t03778Z Brassica rapa HOM05D001578 ORTHO05D001207 1.3e-69 266.5 184 81.0
A01p37170 Brassica napus HOM05D001578 ORTHO05D001207 2.2e-69 265.8 184 81.0
BcaB04g20863 Brassica carinata HOM05D001578 ORTHO05D001207 9.7e-65 250.4 184 76.1
Sp3g15350 Schrenkiella parvula HOM05D001578 ORTHO05D001207 1.1e-60 236.9 182 73.6
BolC5t33672H Brassica oleracea HOM05D001578 ORTHO05D001207 5.5e-60 234.6 184 72.3
A05p32610 Brassica napus HOM05D001578 ORTHO05D001207 9.4e-60 233.8 184 72.3
BraA05t22085Z Brassica rapa HOM05D001578 ORTHO05D001207 9.4e-60 233.8 184 72.3
BcaC05g28823 Brassica carinata HOM05D001578 ORTHO05D001207 6.1e-59 231.1 184 71.2
C05p49310 Brassica napus HOM05D001578 ORTHO05D001207 6.1e-59 231.1 184 71.2
BraA03t13159Z Brassica rapa HOM05D001578 ORTHO05D001207 5.7e-57 224.6 184 71.2
BcaB06g25805 Brassica carinata HOM05D001578 ORTHO05D001207 7.5e-57 224.2 177 71.8
A03p40090 Brassica napus HOM05D001578 ORTHO05D001207 7.5e-57 224.2 184 71.2
BcaB04g18931 Brassica carinata HOM05D001578 ORTHO05D001207 1.7e-56 223.0 184 70.1
CARHR092380 Cardamine hirsuta HOM05D001578 ORTHO05D001207 3.7e-56 221.9 184 69.6
BcaC01g03785 Brassica carinata HOM05D001578 ORTHO05D001207 6.3e-56 221.1 184 70.1
C03p48660 Brassica napus HOM05D001578 ORTHO05D001207 6.3e-56 221.1 184 70.1
Thhalv10021610m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 9.1e-55 217.2 184 67.9
BolC3t17144H Brassica oleracea HOM05D001578 ORTHO05D001207 3.5e-54 215.3 192 67.2
AT3G17130 Arabidopsis thaliana HOM05D001578 ORTHO05D001207 7.7e-54 214.2 182 66.5
AL3G30110 Arabidopsis lyrata HOM05D001578 ORTHO05D001207 6.5e-53 211.1 181 66.3
Carub.0003s1687 Capsella rubella HOM05D001578 ORTHO05D001207 7.2e-52 207.6 181 66.3
Aa31LG8G4140 Aethionema arabicum HOM05D001578 ORTHO05D001207 8.3e-48 194.1 175 63.4
THA.LOC104820315 Tarenaya hassleriana HOM05D001578 ORTHO05D001207 7.5e-41 171.0 168 56.0
Cpa.g.sc9.27 Carica papaya HOM05D001578 ORTHO05D001207 1.3e-29 133.7 174 44.8
Manes.15G002000 Manihot esculenta HOM05D001578 ORTHO05D001207 8.1e-27 124.4 179 44.7
Duzib151G1057 Durio zibethinus HOM05D001578 ORTHO05D001207 1.5e-25 120.2 178 42.1
Sabra08G0077400 Salix brachista HOM05D001578 ORTHO05D001207 4.4e-25 118.6 176 42.0
Potri.008G102600 Populus trichocarpa HOM05D001578 ORTHO05D001207 1.3e-24 117.1 177 41.8
Atru.chr4.3054 Acer truncatum HOM05D001578 ORTHO05D001207 2.2e-24 116.3 155 41.9
COL.COLO4_34581 Corchorus olitorius HOM05D001578 ORTHO05D001207 2.2e-24 116.3 185 41.1
Thecc.04G304700 Theobroma cacao HOM05D001578 ORTHO05D001207 2.9e-24 115.9 184 39.1
Gohir.A01G035200 Gossypium hirsutum HOM05D001578 ORTHO05D001207 6.4e-24 114.8 174 39.7
Gohir.D01G023565 Gossypium hirsutum HOM05D001578 ORTHO05D001207 2.4e-23 112.8 174 39.7
Gorai.002G031100 Gossypium raimondii HOM05D001578 ORTHO05D001207 2.4e-23 112.8 174 39.7
TWI09G1118 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 4.1e-23 112.1 154 42.9
Ciclev10006032m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.2e-22 110.5 177 38.4
Medtr2g033630 Medicago truncatula HOM05D001578 ORTHO05D001207 1.6e-22 110.2 183 37.2
Glyma.07G237500 Glycine max HOM05D001578 ORTHO05D001207 3.5e-22 109.0 187 38.5
Duzib052G1048 Durio zibethinus HOM05D001578 ORTHO05D001207 7.8e-22 107.8 185 38.4
Manes.03G207000 Manihot esculenta HOM05D001578 ORTHO05D001207 1.3e-21 107.1 175 38.3
Lalb_Chr07g0181951 Lupinus albus HOM05D001578 ORTHO05D001207 8.6e-21 104.4 192 37.5
Lalb_Chr12g0200791 Lupinus albus HOM05D001578 ORTHO05D001207 1.5e-20 103.6 195 36.9
Glyma.17G036100 Glycine max HOM05D001578 ORTHO05D001207 3.3e-20 102.4 189 37.0
Psat0s740g0040 Pisum sativum HOM05D001578 ORTHO05D001207 9.5e-20 100.9 189 37.6
VMungo1215G0592 Vigna mungo HOM05D001578 ORTHO05D001207 1.2e-19 100.5 188 35.6
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 2.8e-19 99.4 190 34.7
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 2.8e-19 99.4 190 34.7
Phvul.003G116900 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 3.6e-19 99.0 190 35.8
MD16G1150200 Malus domestica HOM05D001578 ORTHO05D001207 6.2e-19 98.2 156 37.2
Eucgr.H04067 Eucalyptus grandis HOM05D001578 ORTHO05D001207 8.1e-19 97.8 151 39.7
Medtr4g122740 Medicago truncatula HOM05D001578 ORTHO05D001207 1.4e-18 97.1 185 35.7
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 1.4e-18 97.1 159 37.1
Glyma.15G138400 Glycine max HOM05D001578 ORTHO05D001207 2.4e-18 96.3 154 37.0
CiPaw.01G136000 Carya illinoinensis HOM05D001578 ORTHO05D001207 3.1e-18 95.9 183 35.0
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 3.1e-18 95.9 189 34.9
Glyma.09G033700 Glycine max HOM05D001578 ORTHO05D001207 4.0e-18 95.5 154 37.0
VMungo0540G0744 Vigna mungo HOM05D001578 ORTHO05D001207 4.0e-18 95.5 154 37.0
Lj4g0021583 Lotus japonicus HOM05D001578 ORTHO05D001207 5.2e-18 95.1 190 34.2
RcHm_v2.0_Chr4g0425861 Rosa chinensis HOM05D001578 ORTHO05D001207 5.2e-18 95.1 169 37.3
Lalb_Chr15g0089101 Lupinus albus HOM05D001578 ORTHO05D001207 6.8e-18 94.7 174 35.6
Phvul.006G119800 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 6.8e-18 94.7 154 37.0
FvH4_4g20180 Fragaria vesca HOM05D001578 ORTHO05D001207 1.2e-17 94.0 173 34.7
FAN07G0539 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.2e-17 94.0 169 35.5
FAN12G2195 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.2e-17 94.0 173 34.7
PGR004G2339 Punica granatum HOM05D001578 ORTHO05D001207 2.0e-17 93.2 187 33.2
PGR031G1824 Punica granatum HOM05D001578 ORTHO05D001207 2.0e-17 93.2 165 37.6
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 2.6e-17 92.8 178 33.7
Psat1g162120 Pisum sativum HOM05D001578 ORTHO05D001207 3.4e-17 92.4 190 33.7
MD13G1149800 Malus domestica HOM05D001578 ORTHO05D001207 9.9e-17 90.9 170 35.3
TPR.G25390 Trifolium pratense HOM05D001578 ORTHO05D001207 9.9e-17 90.9 193 35.2
CANSAT78G0727 Cannabis sativa HOM05D001578 ORTHO05D001207 1.3e-16 90.5 181 32.6
TPR.G33864 Trifolium pratense HOM05D001578 ORTHO05D001207 1.3e-16 90.5 185 33.0
Eucgr.B03967 Eucalyptus grandis HOM05D001578 ORTHO05D001207 4.9e-16 88.6 102 42.2
Lj6g0003953 Lotus japonicus HOM05D001578 ORTHO05D001207 6.4e-16 88.2 160 36.2
PGR031G2148 Punica granatum HOM05D001578 ORTHO05D001207 6.4e-16 88.2 164 37.2
Ca_21411_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 4.6e-14 82.0 103 41.7
Sabra08G0077500 Salix brachista HOM05D001578 ORTHO05D001207 2.3e-13 79.7 176 33.0
Medtr4g122720 Medicago truncatula HOM05D001578 ORTHO05D001207 7.3e-12 74.7 180 30.0
Cfa015283 Carpinus fangiana HOM05D001578 ORTHO05D001207 1.6e-11 73.6 151 29.8
TPR.G25409 Trifolium pratense HOM05D001578 ORTHO05D001207 1.6e-11 73.6 186 30.6
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 4.7e-11 72.0 156 28.2
Psat4g021720 Pisum sativum HOM05D001578 ORTHO05D001207 1.4e-10 70.5 188 28.7
Duzib052G0195 Durio zibethinus HOM05D001578 ORTHO05D001207 2.4e-10 69.7 152 27.0
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 4.0e-10 68.9 150 28.7
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 4.0e-10 68.9 150 28.7
Gohir.D10G180700 Gossypium hirsutum HOM05D001578 ORTHO05D001207 4.0e-10 68.9 152 27.0
Gorai.011G202200 Gossypium raimondii HOM05D001578 ORTHO05D001207 4.0e-10 68.9 152 27.0
Gohir.A10G174100 Gossypium hirsutum HOM05D001578 ORTHO05D001207 5.2e-10 68.6 152 27.0
arahy.Tifrunner.gnm1.ann1.2R90TF Arachis hypogaea HOM05D000961 ORTHO05D001207 6.9e-10 68.2 170 29.4
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 1.2e-09 67.4 179 28.5
Duzib151G0695 Durio zibethinus HOM05D001578 ORTHO05D001207 1.5e-09 67.0 160 26.2
Ca_00963_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 2.0e-09 66.6 86 43.0
Lsat_1_v5_gn_6_301 Lactuca sativa HOM05D001578 ORTHO05D001207 2.6e-09 66.2 166 29.5
Cpa.g.sc9.25 Carica papaya HOM05D001578 ORTHO05D001207 3.4e-09 65.9 149 28.2
EL10Ac7g16355 Beta vulgaris HOM05D001578 ORTHO05D001207 9.9e-09 64.3 171 29.8
Atru.chr4.3057 Acer truncatum HOM05D001578 ORTHO05D001207 1.3e-08 63.9 167 28.7
COL.COLO4_34578 Corchorus olitorius HOM05D001578 ORTHO05D001207 1.3e-08 63.9 175 29.1
HanXRQChr13g0395221 Helianthus annuus HOM05D001578 ORTHO05D001207 1.3e-08 63.9 167 29.3
SGA_v2.0_scaffold246G44798 Striga asiatica HOM05D001578 ORTHO05D001207 1.3e-08 63.9 154 28.6
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 1.7e-08 63.5 155 30.3
Eucgr.B03968 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.7e-08 63.5 103 35.9
Thecc.04G305000 Theobroma cacao HOM05D001578 ORTHO05D001207 1.7e-08 63.5 154 25.3
ECA233G5780 Erigeron canadensis HOM05D001578 ORTHO05D001207 2.2e-08 63.2 149 27.5
Atru.chr4.3056 Acer truncatum HOM05D001578 ORTHO05D001207 3.8e-08 62.4 170 27.1
Gohir.A10G174050 Gossypium hirsutum HOM05D001578 ORTHO05D001207 4.9e-08 62.0 159 30.8
AUR62009839 Chenopodium quinoa HOM05D001578 ORTHO05D001207 6.4e-08 61.6 178 30.9
COL.COLO4_34577 Corchorus olitorius HOM05D001578 ORTHO05D001207 6.4e-08 61.6 185 26.5
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 8.4e-08 61.2 150 30.0
Medtr4g122718 Medicago truncatula HOM05D001578 ORTHO05D001207 8.4e-08 61.2 103 34.0
Gohir.A05G275500 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.1e-07 60.8 157 28.7
Gohir.D05G277600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.4e-07 60.5 157 28.7
AUR62038151 Chenopodium quinoa HOM05D001578 ORTHO05D001207 1.9e-07 60.1 179 29.1
Gorai.009G290600 Gossypium raimondii HOM05D001578 ORTHO05D001207 1.9e-07 60.1 153 28.8
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 1.9e-07 60.1 159 27.7
Lsat_1_v5_gn_7_59360 Lactuca sativa HOM05D001578 ORTHO05D001207 3.2e-07 59.3 163 25.8
Lsat_1_v5_gn_7_59420 Lactuca sativa HOM05D001578 ORTHO05D001207 3.2e-07 59.3 163 25.8
Sabra10G0043600 Salix brachista HOM05D001578 ORTHO05D001207 5.4e-07 58.5 185 28.1
Gohir.D10G180600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 9.3e-07 57.8 174 27.6
Gorai.011G202100 Gossypium raimondii HOM05D001578 ORTHO05D001207 9.3e-07 57.8 174 27.6
QL06p012845 Quercus lobata HOM05D001578 ORTHO05D001207 9.3e-07 57.8 159 28.3
CiPaw.01G135600 Carya illinoinensis HOM05D001578 ORTHO05D001207 1.2e-06 57.4 151 26.5
CiPaw.01G135900 Carya illinoinensis HOM05D001578 ORTHO05D001207 1.2e-06 57.4 151 27.2
Duzib052G0880 Durio zibethinus HOM05D001578 ORTHO05D001207 1.2e-06 57.4 163 30.1
Manes.03G207100 Manihot esculenta HOM05D001578 ORTHO05D001207 1.2e-06 57.4 179 27.4
Potri.010G063000 Populus trichocarpa HOM05D001578 ORTHO05D001207 1.6e-06 57.0 185 28.6
Lsat_1_v5_gn_7_59300 Lactuca sativa HOM05D001578 ORTHO05D001207 2.1e-06 56.6 163 25.2
Potri.009G083500 Populus trichocarpa HOM05D001578 ORTHO05D001207 2.1e-06 56.6 153 24.8
QL06p012837 Quercus lobata HOM05D001578 ORTHO05D001207 2.1e-06 56.6 159 28.9
Sabra10G0043700 Salix brachista HOM05D001578 ORTHO05D001207 2.7e-06 56.2 166 27.1
Duzib151G0004 Durio zibethinus HOM05D001578 ORTHO05D001207 3.5e-06 55.8 155 27.1
QL06p012826 Quercus lobata HOM05D001578 ORTHO05D001207 3.5e-06 55.8 159 27.7
MSTRG.24829 Avicennia marina HOM05D001578 ORTHO05D001207 4.6e-06 55.5 164 26.8
CSS0012414 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 7.8e-06 54.7 156 27.6
Ciclev10006791m.g Citrus clementina HOM05D001578 ORTHO05D001207 7.8e-06 54.7 150 24.0


User provided reference genes

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