Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p47000 Brassica napus HOM05D003146 ORTHO05D001819 4.1e-78 294.7 151 100.0
BolC1t04668H Brassica oleracea HOM05D003146 ORTHO05D001819 4.1e-78 294.7 151 100.0
BcaC09g48680 Brassica carinata HOM05D003146 ORTHO05D001819 5.4e-78 294.3 151 99.3
A01p37120 Brassica napus HOM05D003146 ORTHO05D001819 3.8e-71 271.6 147 93.9
BcaB04g20850 Brassica carinata HOM05D003146 ORTHO05D001819 1.0e-44 183.7 145 67.6
BraA01t03769Z Brassica rapa HOM05D003146 ORTHO05D001819 1.3e-44 183.3 99 93.9
BcaC09g48683 Brassica carinata HOM05D003146 ORTHO05D001819 6.3e-42 174.5 143 68.5
C01p46950 Brassica napus HOM05D003146 ORTHO05D001819 6.3e-42 174.5 143 68.5
C01p46980 Brassica napus HOM05D003146 ORTHO05D001819 6.3e-42 174.5 143 68.5
BolC1t04666H Brassica oleracea HOM05D003146 ORTHO05D001819 6.3e-42 174.5 143 68.5
A01p37050 Brassica napus HOM05D003146 ORTHO05D001819 5.3e-41 171.4 143 67.1
BraA01t03766Z Brassica rapa HOM05D003146 ORTHO05D001819 5.3e-41 171.4 143 67.1
A01p37070 Brassica napus HOM05D003146 ORTHO05D001819 1.7e-39 166.4 90 94.4
Thhalv10022367m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 3.6e-37 158.7 133 60.9
Sp3g15430 Schrenkiella parvula HOM05D003146 ORTHO05D001819 1.3e-36 156.8 145 60.0
CARHR092490 Cardamine hirsuta HOM05D003146 ORTHO05D001819 8.7e-36 154.1 145 58.6
AT3G17220 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 1.5e-35 153.3 145 56.6
AL3G30250 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 3.3e-35 152.1 145 55.9
Carub.0003s1698 Capsella rubella HOM05D003146 ORTHO05D001819 1.1e-33 147.1 145 55.9
Aa31LG8G4190 Aethionema arabicum HOM05D003146 ORTHO05D001819 1.7e-26 123.2 130 51.5
THA.LOC104820282 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 9.4e-22 107.5 134 45.5
THA.LOC104816708 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 3.6e-21 105.5 134 44.0
THA.LOC104825373 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.0e-20 104.0 134 43.3
THA.LOC104817105 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 8.8e-20 100.9 145 38.6
THA.LOC104808963 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 7.4e-19 97.8 134 44.8
THA.LOC104802649 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.0e-16 89.7 152 34.9
Sed0025500 Sechium edule HOM05D003146 ORTHO05D001819 7.7e-16 87.8 147 36.7
THA.LOC104803096 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 7.7e-16 87.8 152 33.6
THA.LOC104802648 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.1e-14 84.0 141 33.3
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 1.6e-13 80.1 146 37.0
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 3.6e-13 79.0 151 35.1
Carub.0001s3713 Capsella rubella HOM05D003146 ORTHO05D001819 4.7e-13 78.6 146 34.9
Thhalv10012260m.g Eutrema salsugineum HOM05D008385 ORTHO05D001819 8.0e-13 77.8 152 30.3
Aa31LG10G5790 Aethionema arabicum HOM05D003146 ORTHO05D001819 4.0e-12 75.5 144 34.0
AT1G48020 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 4.0e-12 75.5 146 34.9
Actinidia18484 Actinidia chinensis HOM05D003146 ORTHO05D001819 6.7e-12 74.7 120 34.2
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 1.2e-11 73.9 143 31.5
Thhalv10011818m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 2.0e-11 73.2 146 34.2
THA.LOC104801632 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.0e-11 73.2 148 33.1
MELO3C035196.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.6e-11 72.8 139 34.5
Sp1g35000 Schrenkiella parvula HOM05D003146 ORTHO05D001819 2.6e-11 72.8 146 32.9
AL1G54540 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 3.3e-11 72.4 146 33.6
AL1G54590 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 3.3e-11 72.4 146 33.6
MELO3C034932.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.4e-11 72.0 139 31.7
Actinidia18487 Actinidia chinensis HOM05D003146 ORTHO05D001819 5.7e-11 71.6 101 38.6
Rhsim06G0181100 Rhododendron simsii HOM05D009438 ORTHO05D001819 5.7e-11 71.6 137 29.9
THA.LOC104810183 Tarenaya hassleriana HOM05D008385 ORTHO05D001819 9.7e-11 70.9 148 31.8
THA.LOC104810184 Tarenaya hassleriana HOM05D008385 ORTHO05D001819 9.7e-11 70.9 148 31.8
CARHR037660 Cardamine hirsuta HOM05D003146 ORTHO05D001819 1.7e-10 70.1 146 32.9
MELO3C027265.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.2e-10 69.7 139 30.9
MELO3C027398.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.8e-10 68.6 139 30.9
Rhsim04G0244100 Rhododendron simsii HOM05D003146 ORTHO05D001819 4.8e-10 68.6 145 31.7
Sed0022729 Sechium edule HOM05D003146 ORTHO05D001819 4.8e-10 68.6 122 34.4
MELO3C019860.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.3e-10 68.2 147 31.3
Peaxi162Scf00089g00132 Petunia axillaris HOM05D003146 ORTHO05D001819 6.3e-10 68.2 135 27.4
Haze_03215 Corylus avellana HOM05D003146 ORTHO05D001819 8.2e-10 67.8 138 30.4
Nitab4.5_0010452g0030 Nicotiana tabacum HOM05D003146 ORTHO05D001819 8.2e-10 67.8 144 30.6
Ca_06775_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 1.1e-09 67.4 132 31.8
MELO3C000643.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-09 67.4 147 30.6
MELO3C025842.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-09 67.4 138 30.4
CsaV3_4G038000 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.4e-09 67.0 139 33.8
CsaV3_6G023780 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.4e-09 67.0 139 33.8
CsaV3_6G026320 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.4e-09 67.0 139 33.8
CsaV3_6G026340 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.4e-09 67.0 139 33.8
CsaV3_6G027350 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.4e-09 67.0 139 33.8
CsaV3_UNG007100 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.4e-09 67.0 139 33.8
CsaV3_UNG217460 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.4e-09 67.0 139 33.8
CsaV3_UNG225750 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.4e-09 67.0 139 33.8
CsaV3_UNG235420 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.4e-09 67.0 139 33.8
MELO3C030067.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.8e-09 66.6 144 31.9
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 1.8e-09 66.6 112 30.4
ClCG06G004590 Citrullus lanatus HOM05D003146 ORTHO05D001819 3.1e-09 65.9 110 34.5
MELO3C019867.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.1e-09 65.9 147 30.6
MELO3C027585.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.1e-09 65.9 142 28.2
MELO3C027590.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.1e-09 65.9 126 31.7
PGSC0003DMG400034620 Solanum tuberosum HOM05D003146 ORTHO05D001819 3.1e-09 65.9 120 28.3
A08p05340 Brassica napus HOM05D003146 ORTHO05D001819 4.1e-09 65.5 146 30.8
BraSC267t45946Z Brassica rapa HOM05D003146 ORTHO05D001819 4.1e-09 65.5 146 30.8
ClCG11G011230 Citrullus lanatus HOM05D003146 ORTHO05D001819 5.3e-09 65.1 110 34.5
MELO3C000387.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.3e-09 65.1 143 29.4
CsaV3_UNG084670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 5.3e-09 65.1 136 32.4
CsaV3_UNG132030 Cucumis sativus L. HOM05D003146 ORTHO05D001819 5.3e-09 65.1 136 32.4
Aa31LG10G5720 Aethionema arabicum HOM05D008385 ORTHO05D001819 7.0e-09 64.7 130 30.0
BcaB04g17471 Brassica carinata HOM05D003146 ORTHO05D001819 7.0e-09 64.7 146 30.1
BcaC07g37182 Brassica carinata HOM05D003146 ORTHO05D001819 7.0e-09 64.7 146 30.8
BolC8t47376H Brassica oleracea HOM05D003146 ORTHO05D001819 7.0e-09 64.7 146 30.8
MELO3C030075.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.0e-09 64.7 113 34.5
Aa31LG10G5700 Aethionema arabicum HOM05D008385 ORTHO05D001819 9.1e-09 64.3 121 28.9
C08p05630 Brassica napus HOM05D003146 ORTHO05D001819 9.1e-09 64.3 146 30.8
MELO3C034867.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.1e-09 64.3 135 28.9
Dinv22854 Davidia involucrata HOM05D009438 ORTHO05D010870 9.1e-09 64.3 149 26.8
BraA05t21032Z Brassica rapa HOM05D003146 ORTHO05D001819 1.2e-08 63.9 144 30.6
Solyc03g112180.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 1.2e-08 63.9 136 28.7
BcaB02g11337 Brassica carinata HOM05D003146 ORTHO05D001819 1.6e-08 63.5 144 31.2
Medtr6g023995 Medicago truncatula HOM05D007995 ORTHO05D001819 2.0e-08 63.2 102 29.4
THA.LOC104825839 Tarenaya hassleriana HOM05D008385 ORTHO05D001819 2.0e-08 63.2 135 31.1
ClCG09G008860 Citrullus lanatus HOM05D003146 ORTHO05D001819 2.7e-08 62.8 148 31.8
CAN.G338.39 Capsicum annuum HOM05D003146 ORTHO05D001819 3.5e-08 62.4 141 26.2
MELO3C019866.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.5e-08 62.0 147 28.6
Dinv22851 Davidia involucrata HOM05D009438 ORTHO05D010870 4.5e-08 62.0 149 26.2
Dinv22852 Davidia involucrata HOM05D009438 ORTHO05D010870 4.5e-08 62.0 149 26.2
Dinv22853 Davidia involucrata HOM05D009438 ORTHO05D010870 4.5e-08 62.0 149 26.2
Medtr8g032810 Medicago truncatula HOM05D007995 ORTHO05D001819 4.5e-08 62.0 138 29.7
vmacro07979 Vaccinium macrocarpon HOM05D003146 ORTHO05D001819 4.5e-08 62.0 145 30.3
A05p21240 Brassica napus HOM05D003146 ORTHO05D001819 5.9e-08 61.6 144 29.9
Dinv22850 Davidia involucrata HOM05D009438 ORTHO05D010870 5.9e-08 61.6 149 26.2
Medtr4g025010 Medicago truncatula HOM05D007995 ORTHO05D001819 5.9e-08 61.6 141 31.9
Actinidia14750 Actinidia chinensis HOM05D009438 ORTHO05D010870 7.7e-08 61.2 119 26.1
Actinidia36483 Actinidia chinensis HOM05D000573 ORTHO05D001819 7.7e-08 61.2 116 28.4
Ciclev10002621m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.0e-07 60.8 111 32.4
BcaC05g27598 Brassica carinata HOM05D003146 ORTHO05D001819 1.7e-07 60.1 143 28.0
C05p35840 Brassica napus HOM05D003146 ORTHO05D001819 1.7e-07 60.1 143 28.0
BolC5t32301H Brassica oleracea HOM05D003146 ORTHO05D001819 1.7e-07 60.1 143 28.0
MELO3C030065.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.7e-07 60.1 144 29.9
CiPaw.01G136000 Carya illinoinensis HOM05D001578 ORTHO05D001207 2.9e-07 59.3 119 29.4
Ciclev10004017m.g Citrus clementina HOM05D001578 ORTHO05D001207 2.9e-07 59.3 111 32.4
MELO3C019864.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.9e-07 59.3 143 29.4
MELO3C032417.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.0e-07 58.5 144 28.5
Hma1.2p1_1096F.1_g256660 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 5.0e-07 58.5 134 29.1
PGSC0003DMG400003833 Solanum tuberosum HOM05D003146 ORTHO05D001819 5.0e-07 58.5 112 27.7
TPR.G28273 Trifolium pratense HOM05D007995 ORTHO05D001819 5.0e-07 58.5 141 31.2
Actinidia18154 Actinidia chinensis HOM05D009438 ORTHO05D010870 6.5e-07 58.2 119 25.2
Ca_31166_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 6.5e-07 58.2 130 30.0
TPR.G16193 Trifolium pratense HOM05D007995 ORTHO05D001819 6.5e-07 58.2 136 27.9
Aa31LG10G5770 Aethionema arabicum HOM05D003146 ORTHO05D001819 8.5e-07 57.8 113 27.4
Rhsim07G0137900 Rhododendron simsii HOM05D009438 ORTHO05D010870 8.5e-07 57.8 114 26.3
Migut.I00086 Erythranthe guttata HOM05D062370 ORTHO05D001819 1.1e-06 57.4 120 27.5
Medtr6g023935 Medicago truncatula HOM05D007995 ORTHO05D001819 1.1e-06 57.4 114 24.6
Nn3g20356 Nelumbo nucifera HOM05D003146 ORTHO05D001819 1.1e-06 57.4 125 28.8
Psat3g149840 Pisum sativum HOM05D007995 ORTHO05D001819 1.1e-06 57.4 134 33.6
PGR004G2081 Punica granatum HOM05D003146 ORTHO05D001819 1.1e-06 57.4 136 26.5
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 1.5e-06 57.0 140 31.4
Sopen09g028760 Solanum pennellii HOM05D003146 ORTHO05D001819 1.9e-06 56.6 112 27.7
CsaV3_6G020170 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.5e-06 56.2 131 29.0
Aa31LG10G5710 Aethionema arabicum HOM05D008385 ORTHO05D010806 3.2e-06 55.8 143 28.0
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 3.2e-06 55.8 112 28.6
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 3.2e-06 55.8 112 28.6
Medtr6g023915 Medicago truncatula HOM05D007995 ORTHO05D001819 3.2e-06 55.8 112 27.7
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 3.2e-06 55.8 135 28.1
CANSAT78G0727 Cannabis sativa HOM05D001578 ORTHO05D001207 4.2e-06 55.5 144 27.1
Cfa015283 Carpinus fangiana HOM05D001578 ORTHO05D001207 4.2e-06 55.5 139 31.7
Prupe.3G007700 Prunus persica HOM05D001578 ORTHO05D001207 4.2e-06 55.5 140 25.0
Solyc09g072950.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 4.2e-06 55.5 112 27.7
CsaV3_6G022330 Cucumis sativus L. HOM05D003146 ORTHO05D001819 5.5e-06 55.1 89 36.0
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.5e-06 55.1 90 34.4
RcHm_v2.0_Chr2g0143761 Rosa chinensis HOM05D001578 ORTHO05D001207 5.5e-06 55.1 140 25.0
RcHm_v2.0_Chr2g0144321 Rosa chinensis HOM05D001578 ORTHO05D001207 5.5e-06 55.1 140 25.0
RcHm_v2.0_Chr7g0200071 Rosa chinensis HOM05D001578 ORTHO05D001207 5.5e-06 55.1 140 25.0
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 7.2e-06 54.7 140 30.7
Medtr6g024040 Medicago truncatula HOM05D007995 ORTHO05D001819 7.2e-06 54.7 133 27.8
PSO081G0057 Papaver somniferum HOM05D001445 ORTHO05D001261 7.2e-06 54.7 136 30.1
Migut.I00087 Erythranthe guttata HOM05D062370 ORTHO05D001819 9.4e-06 54.3 94 29.8
Medtr6g024035 Medicago truncatula HOM05D007995 ORTHO05D001819 9.4e-06 54.3 134 27.6
Potri.007G068300 Populus trichocarpa HOM05D007968 ORTHO05D010203 9.4e-06 54.3 152 27.6


User provided reference genes

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