Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p46310 Brassica napus HOM05D000108 ORTHO05D011597 2.6e-46 188.3 93 100.0
BolC1t04593H Brassica oleracea HOM05D000108 ORTHO05D011597 2.6e-46 188.3 93 100.0
BolC1t04594H Brassica oleracea HOM05D000108 ORTHO05D011597 2.6e-46 188.3 93 100.0
C01p46760 Brassica napus HOM05D000108 ORTHO05D011597 2.0e-43 178.7 99 92.9
BolC1t04648H Brassica oleracea HOM05D000108 ORTHO05D011597 2.0e-43 178.7 99 92.9
A07p08640 Brassica napus HOM05D000108 ORTHO05D011597 3.5e-43 177.9 93 94.6
A07p11270 Brassica napus HOM05D000108 ORTHO05D011597 3.5e-43 177.9 93 94.6
BraA09t38068Z Brassica rapa HOM05D000108 ORTHO05D011597 3.5e-43 177.9 93 94.6
C09p32310 Brassica napus HOM05D000108 ORTHO05D011597 7.8e-43 176.8 93 93.5
BraA07t28653Z Brassica rapa HOM05D000108 ORTHO05D011597 1.7e-42 175.6 93 93.5
CARHR154150 Cardamine hirsuta HOM05D000108 ORTHO05D001149 8.1e-32 140.2 117 68.4
A01p26440 Brassica napus HOM05D000108 ORTHO05D001149 1.8e-31 139.0 116 68.1
BraA01t02568Z Brassica rapa HOM05D000108 ORTHO05D001149 1.8e-31 139.0 116 68.1
Carub.0005s1169 Capsella rubella HOM05D000108 ORTHO05D001149 5.2e-31 137.5 118 66.1
AL5G24530 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 6.8e-31 137.1 118 66.9
BolC1t03310H Brassica oleracea HOM05D000108 ORTHO05D001149 1.2e-30 136.3 116 66.4
BcaB05g23477 Brassica carinata HOM05D000108 ORTHO05D001149 3.4e-30 134.8 121 66.1
AT3G45850 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 1.3e-29 132.9 120 63.3
Thhalv10002384m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 1.7e-29 132.5 117 65.0
BcaC09g49719 Brassica carinata HOM05D000108 ORTHO05D001149 2.2e-29 132.1 116 65.5
C01p33640 Brassica napus HOM05D000108 ORTHO05D001149 2.2e-29 132.1 116 65.5
Sp5g15680 Schrenkiella parvula HOM05D000108 ORTHO05D001149 1.3e-26 122.9 120 61.7
C06p21290 Brassica napus HOM05D000108 ORTHO05D011597 1.6e-24 115.9 105 61.0
BcaB05g24316 Brassica carinata HOM05D000108 ORTHO05D011597 3.6e-24 114.8 59 89.8
Aa31LG4G15070 Aethionema arabicum HOM05D000108 ORTHO05D001149 2.3e-23 112.1 119 57.1
BraA04t16829Z Brassica rapa HOM05D000108 ORTHO05D011597 3.1e-23 111.7 94 69.1
BcaC08g43639 Brassica carinata HOM05D000108 ORTHO05D011597 8.4e-21 103.6 66 77.3
C06p10580 Brassica napus HOM05D000108 ORTHO05D011597 8.4e-21 103.6 66 77.3
A01p41790 Brassica napus HOM05D000108 ORTHO05D011597 9.2e-20 100.1 66 74.2
BraA09t41241Z Brassica rapa HOM05D000108 ORTHO05D011597 9.2e-20 100.1 66 74.2
A03p40640 Brassica napus HOM05D000108 ORTHO05D011597 1.2e-19 99.8 94 63.8
Duzib168G1926 Durio zibethinus HOM05D000108 ORTHO05D001149 6.0e-19 97.4 115 48.7
Lj3g0021793 Lotus japonicus HOM05D000108 ORTHO05D001149 7.8e-19 97.1 108 52.8
Prupe.6G088500 Prunus persica HOM05D000108 ORTHO05D001149 1.0e-18 96.7 116 49.1
THA.LOC104799469 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 3.0e-18 95.1 117 54.7
Phvul.011G070000 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 3.9e-18 94.7 110 51.8
TAR636G0183 Trochodendron aralioides HOM05D000108 ORTHO05D001149 3.9e-18 94.7 115 48.7
Cfa011412 Carpinus fangiana HOM05D000108 ORTHO05D001149 5.1e-18 94.4 115 48.7
COL.COLO4_18411 Corchorus olitorius HOM05D000108 ORTHO05D001149 5.1e-18 94.4 115 48.7
MD03G1105800 Malus domestica HOM05D000108 ORTHO05D001149 5.1e-18 94.4 116 46.6
MD11G1118200 Malus domestica HOM05D000108 ORTHO05D001149 5.1e-18 94.4 116 46.6
Haze_23988 Corylus avellana HOM05D000108 ORTHO05D001149 6.6e-18 94.0 115 48.7
Haze_23992 Corylus avellana HOM05D000108 ORTHO05D001149 6.6e-18 94.0 115 48.7
FAN25G2360 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.1e-17 93.2 114 47.4
Potri.001G233700 Populus trichocarpa HOM05D000108 ORTHO05D001149 1.1e-17 93.2 115 47.8
Potri.009G026000 Populus trichocarpa HOM05D000108 ORTHO05D001149 1.1e-17 93.2 115 46.1
FvH4_3g34440 Fragaria vesca HOM05D000108 ORTHO05D001149 1.9e-17 92.4 114 46.5
FAN16G0704 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.9e-17 92.4 114 46.5
FAN25G0698 Fragaria x ananassa HOM05D000108 ORTHO05D011597 1.9e-17 92.4 114 46.5
Ciclev10027728m.g Citrus clementina HOM05D000108 ORTHO05D001149 2.5e-17 92.0 117 50.4
FAN21G0560 Fragaria x ananassa HOM05D000108 ORTHO05D001149 2.5e-17 92.0 114 45.6
SalBow3G2091 Salvia bowleyana HOM05D000108 ORTHO05D001149 2.5e-17 92.0 115 48.7
A01p20150 Brassica napus HOM05D000108 ORTHO05D011597 5.6e-17 90.9 88 61.4
Cpa.g.sc139.8 Carica papaya HOM05D000108 ORTHO05D001149 5.6e-17 90.9 115 47.8
FAN11G1183 Fragaria x ananassa HOM05D000108 ORTHO05D001149 5.6e-17 90.9 114 45.6
Lalb_Chr14g0374921 Lupinus albus HOM05D000108 ORTHO05D001149 5.6e-17 90.9 115 45.2
Manes.11G137400 Manihot esculenta HOM05D000108 ORTHO05D001149 5.6e-17 90.9 115 47.0
Sabra16G0140000 Salix brachista HOM05D000108 ORTHO05D001149 5.6e-17 90.9 115 46.1
Thecc.09G332700 Theobroma cacao HOM05D000108 ORTHO05D001149 5.6e-17 90.9 115 46.1
TWI79G1415 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 5.6e-17 90.9 117 50.4
Actinidia37269 Actinidia chinensis HOM05D000108 ORTHO05D001149 7.3e-17 90.5 115 47.8
CANSAT54G1698 Cannabis sativa HOM05D000108 ORTHO05D001149 7.3e-17 90.5 115 47.0
CiPaw.13G102700 Carya illinoinensis HOM05D000108 ORTHO05D001149 7.3e-17 90.5 115 47.8
TWI31G0805 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 7.3e-17 90.5 117 50.4
Duzib150G0072 Durio zibethinus HOM05D000108 ORTHO05D001149 1.2e-16 89.7 115 46.1
Duzib170G0496 Durio zibethinus HOM05D000108 ORTHO05D001149 1.2e-16 89.7 114 47.4
Nn2g12816 Nelumbo nucifera HOM05D000108 ORTHO05D001149 1.2e-16 89.7 115 47.0
arahy.Tifrunner.gnm1.ann1.7B48AK Arachis hypogaea HOM05D000108 ORTHO05D001149 1.6e-16 89.4 115 46.1
arahy.Tifrunner.gnm1.ann1.QN0DU3 Arachis hypogaea HOM05D000108 ORTHO05D001149 1.6e-16 89.4 115 46.1
Glyma.12G074300 Glycine max HOM05D000108 ORTHO05D001149 1.6e-16 89.4 110 50.9
RcHm_v2.0_Chr5g0062081 Rosa chinensis HOM05D000108 ORTHO05D001149 2.1e-16 89.0 112 46.4
arahy.Tifrunner.gnm1.ann1.2070QL Arachis hypogaea HOM05D000108 ORTHO05D001149 2.8e-16 88.6 116 45.7
Rhsim13G0089400 Rhododendron simsii HOM05D000108 ORTHO05D001149 2.8e-16 88.6 115 47.0
MSTRG.17848 Avicennia marina HOM05D000108 ORTHO05D001149 3.6e-16 88.2 108 50.9
Migut.N02645 Erythranthe guttata HOM05D000108 ORTHO05D001149 3.6e-16 88.2 109 48.6
Gohir.A05G099500 Gossypium hirsutum HOM05D000108 ORTHO05D001149 3.6e-16 88.2 115 45.2
Manes.04G028300 Manihot esculenta HOM05D000108 ORTHO05D001149 3.6e-16 88.2 115 47.8
VMungo1080G1229 Vigna mungo HOM05D000108 ORTHO05D001149 3.6e-16 88.2 115 47.0
GSVIVG01025071001 Vitis vinifera HOM05D000108 ORTHO05D001149 3.6e-16 88.2 115 47.0
Atru.chr3.3778 Acer truncatum HOM05D000108 ORTHO05D001149 6.2e-16 87.4 115 46.1
Oeu058513.1 Olea europaea HOM05D000108 ORTHO05D001149 6.2e-16 87.4 115 45.2
QL01p035162 Quercus lobata HOM05D000108 ORTHO05D001149 6.2e-16 87.4 114 46.5
vmacro03137 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 6.2e-16 87.4 115 47.0
Actinidia07086 Actinidia chinensis HOM05D000108 ORTHO05D001149 8.1e-16 87.0 115 46.1
CSS0041728 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 8.1e-16 87.0 115 47.8
Glyma.15G043400 Glycine max HOM05D000108 ORTHO05D001149 8.1e-16 87.0 115 47.0
Phvul.L002157 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 8.1e-16 87.0 115 47.0
VMungo1127G1903 Vigna mungo HOM05D000108 ORTHO05D001149 8.1e-16 87.0 109 48.6
Ca_01363_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001149 1.1e-15 86.7 115 46.1
Oeu041005.1 Olea europaea HOM05D000108 ORTHO05D001149 1.1e-15 86.7 115 46.1
Hund05022 Selenicereus undatus HOM05D000108 ORTHO05D001149 1.1e-15 86.7 115 46.1
TAR633G1860 Trochodendron aralioides HOM05D000108 ORTHO05D001149 1.1e-15 86.7 117 48.7
arahy.Tifrunner.gnm1.ann1.CITF9E Arachis hypogaea HOM05D000108 ORTHO05D001149 2.4e-15 85.5 116 44.8
Aqoxy4G03111 Aquilegia oxysepala HOM05D000108 ORTHO05D001149 3.1e-15 85.1 115 47.0
MELO3C020688.2 Cucumis melo HOM05D000108 ORTHO05D001149 3.1e-15 85.1 115 44.3
Nn2g10569 Nelumbo nucifera HOM05D000108 ORTHO05D001149 3.1e-15 85.1 117 47.9
EL10Ac7g15934 Beta vulgaris HOM05D000108 ORTHO05D001149 4.0e-15 84.7 115 44.3
TPR.G11605 Trifolium pratense HOM05D000108 ORTHO05D001149 4.0e-15 84.7 115 44.3
PGSC0003DMG400015544 Solanum tuberosum HOM05D000108 ORTHO05D001149 5.2e-15 84.3 114 46.5
Gohir.D03G131700 Gossypium hirsutum HOM05D000108 ORTHO05D001149 6.8e-15 84.0 119 44.5
Gorai.003G138600 Gossypium raimondii HOM05D000108 ORTHO05D001149 6.8e-15 84.0 119 44.5
PSO384G2763 Papaver somniferum HOM05D000108 ORTHO05D001149 6.8e-15 84.0 115 44.3
Ah.08g215030 Amaranthus hybridus HOM05D000108 ORTHO05D001149 8.9e-15 83.6 115 43.5
PSO339G0953 Papaver somniferum HOM05D000108 ORTHO05D001149 8.9e-15 83.6 115 44.3
Psat5g281840 Pisum sativum HOM05D000108 ORTHO05D001149 8.9e-15 83.6 113 46.9
ECA248G3318 Erigeron canadensis HOM05D000108 ORTHO05D001149 1.2e-14 83.2 109 43.1
Gohir.D05G099400 Gossypium hirsutum HOM05D000108 ORTHO05D001149 1.2e-14 83.2 115 44.3
Medtr2g096010 Medicago truncatula HOM05D000108 ORTHO05D001149 1.2e-14 83.2 115 44.3
Oeu062312.1 Olea europaea HOM05D000108 ORTHO05D001149 1.2e-14 83.2 115 44.3
Nitab4.5_0003784g0020 Nicotiana tabacum HOM05D000108 ORTHO05D001149 1.5e-14 82.8 106 45.3
C03p00430 Brassica napus HOM05D000108 ORTHO05D011597 2.0e-14 82.4 95 57.9
ClCG03G001810 Citrullus lanatus HOM05D000108 ORTHO05D001149 2.0e-14 82.4 115 46.1
CsaV3_1G033760 Cucumis sativus L. HOM05D000108 ORTHO05D001149 2.0e-14 82.4 115 43.5
Lalb_Chr19g0137571 Lupinus albus HOM05D000108 ORTHO05D001149 2.0e-14 82.4 59 67.8
Peaxi162Scf00072g00021 Petunia axillaris HOM05D000108 ORTHO05D001149 2.0e-14 82.4 115 42.6
Sed0002914 Sechium edule HOM05D000108 ORTHO05D001149 2.0e-14 82.4 115 44.3
Sed0013938 Sechium edule HOM05D000108 ORTHO05D001149 2.0e-14 82.4 116 43.1
CAN.G84.2 Capsicum annuum HOM05D000108 ORTHO05D001149 2.6e-14 82.0 58 65.5
Gohir.A03G036500 Gossypium hirsutum HOM05D000108 ORTHO05D001149 2.6e-14 82.0 119 44.5
Cc01_g12000 Coffea canephora HOM05D000108 ORTHO05D001149 3.4e-14 81.6 116 44.0
Nitab4.5_0000182g0040 Nicotiana tabacum HOM05D000108 ORTHO05D001149 3.4e-14 81.6 118 43.2
Nitab4.5_0000270g0170 Nicotiana tabacum HOM05D000108 ORTHO05D001149 3.4e-14 81.6 118 43.2
Nitab4.5_0002380g0100 Nicotiana tabacum HOM05D000108 ORTHO05D001149 3.4e-14 81.6 106 44.3
PGR119G0104 Punica granatum HOM05D000108 ORTHO05D001149 3.4e-14 81.6 117 45.3
Glyma.13G330600 Glycine max HOM05D000108 ORTHO05D001149 4.4e-14 81.3 59 66.1
Os05g0117798 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001149 4.4e-14 81.3 116 42.2
AUR62009653 Chenopodium quinoa HOM05D000108 ORTHO05D001149 5.8e-14 80.9 115 43.5
SGA_v2.0_scaffold104G30113 Striga asiatica HOM05D000108 ORTHO05D001149 7.6e-14 80.5 59 64.4
Gorai.009G103300 Gossypium raimondii HOM05D000108 ORTHO05D001149 9.9e-14 80.1 115 43.5
Lalb_Chr22g0350061 Lupinus albus HOM05D000108 ORTHO05D001149 9.9e-14 80.1 115 44.3
Solyc11g072820.3 Solanum lycopersicum HOM05D000108 ORTHO05D001149 1.3e-13 79.7 58 63.8
Sopen11g030490 Solanum pennellii HOM05D000108 ORTHO05D001149 1.3e-13 79.7 58 63.8
AUR62001858 Chenopodium quinoa HOM05D000108 ORTHO05D001149 1.7e-13 79.3 115 43.5
HanXRQChr05g0133911 Helianthus annuus HOM05D000108 ORTHO05D001149 1.7e-13 79.3 113 45.1
Lsat_1_v5_gn_5_166981 Lactuca sativa HOM05D000108 ORTHO05D001149 1.7e-13 79.3 105 44.8
Peaxi162Scf00836g00218 Petunia axillaris HOM05D000108 ORTHO05D001149 2.2e-13 79.0 109 44.0
MBI14_g42160_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001149 3.8e-13 78.2 117 41.0
CAN.G394.9 Capsicum annuum HOM05D000108 ORTHO05D001149 4.9e-13 77.8 118 42.4
ATR0594G216 Amborella trichopoda HOM05D000108 ORTHO05D001149 6.4e-13 77.4 114 41.2
A06p15180 Brassica napus HOM05D000108 ORTHO05D011597 1.4e-12 76.3 88 53.4
HanXRQChr04g0110361 Helianthus annuus HOM05D000108 ORTHO05D001149 1.4e-12 76.3 106 40.6
Sc21g0005340 Simmondsia chinensis HOM05D000108 ORTHO05D001149 1.4e-12 76.3 115 41.7
unitig_0.g1033 Utricularia gibba HOM05D000108 ORTHO05D001149 1.4e-12 76.3 116 39.7
Dinv35678 Davidia involucrata HOM05D000108 ORTHO05D001149 1.9e-12 75.9 111 44.1
PGSC0003DMG400030391 Solanum tuberosum HOM05D000108 ORTHO05D001149 2.4e-12 75.5 118 41.5
THA.LOC104815761 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 2.4e-12 75.5 116 39.7
Lsat_1_v5_gn_8_76521 Lactuca sativa HOM05D000108 ORTHO05D001149 9.3e-12 73.6 119 41.2
CDE09G0015 Ceratophyllum demersum HOM05D000108 ORTHO05D001149 1.2e-11 73.2 115 41.7
Lj1A178T40 Lonicera japonica HOM05D000108 ORTHO05D001149 1.2e-11 73.2 123 41.5
Solyc06g075580.4 Solanum lycopersicum HOM05D000108 ORTHO05D001149 1.2e-11 73.2 118 40.7
Sopen06g031970 Solanum pennellii HOM05D000108 ORTHO05D001149 1.2e-11 73.2 118 40.7
ECA236G0719 Erigeron canadensis HOM05D000108 ORTHO05D001149 1.6e-11 72.8 117 41.9
Zm00001eb265660 Zea mays HOM05D000108 ORTHO05D001149 4.6e-11 71.2 59 54.2
Sc12g0001870 Simmondsia chinensis HOM05D000108 ORTHO05D001149 6.0e-11 70.9 115 40.9
DCAR_006021 Daucus carota HOM05D000108 ORTHO05D011597 1.0e-10 70.1 110 43.6
BolC6t37314H Brassica oleracea HOM05D000313 ORTHO05D011597 1.3e-10 69.7 37 83.8
SalBow3G0765 Salvia bowleyana HOM05D000108 ORTHO05D001149 3.0e-10 68.6 93 40.9
Hma1.2p1_0000F.1_g000500 Hydrangea macrophylla HOM05D000108 ORTHO05D011597 8.7e-10 67.0 59 57.6
Aa31LG5G7600 Aethionema arabicum HOM05D000108 ORTHO05D001149 1.1e-09 66.6 104 38.5
SEGI_04840 Sequoiadendron giganteum HOM05D000108 ORTHO05D001149 1.9e-09 65.9 117 35.0
HPP92_000644 Vanilla planifolia HOM05D000108 ORTHO05D001149 1.9e-09 65.9 116 37.1
CDE02G1599 Ceratophyllum demersum HOM05D000108 ORTHO05D001149 4.3e-09 64.7 59 54.2
Nitab4.5_0000643g0230 Nicotiana tabacum HOM05D000108 ORTHO05D001149 4.3e-09 64.7 58 55.2
Eucgr.B02433 Eucalyptus grandis HOM05D000108 ORTHO05D001149 5.6e-09 64.3 115 37.4
Nitab4.5_0006252g0050 Nicotiana tabacum HOM05D000108 ORTHO05D001149 7.3e-09 63.9 59 52.5
THA.LOC104826348 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 7.3e-09 63.9 115 37.4
AL4G23120 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 1.3e-08 63.2 104 38.5
AT2G28620 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 1.3e-08 63.2 104 39.4
HPP92_000702 Vanilla planifolia HOM05D000108 ORTHO05D001149 1.6e-08 62.8 116 35.3
CARHR121650 Cardamine hirsuta HOM05D000108 ORTHO05D001149 3.6e-08 61.6 102 38.2
PGSC0003DMG400002026 Solanum tuberosum HOM05D000108 ORTHO05D001149 6.9e-07 57.4 58 50.0
Thhalv10016147m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 9.0e-07 57.0 108 35.2
Solyc09g007030.3 Solanum lycopersicum HOM05D000108 ORTHO05D001149 1.2e-06 56.6 59 49.2
Sopen09g001890 Solanum pennellii HOM05D000108 ORTHO05D001149 1.2e-06 56.6 59 49.2
SHI33541 Sapria himalayana HOM05D000108 ORTHO05D029946 2.6e-06 55.5 56 51.8
A04p21690 Brassica napus HOM05D000108 ORTHO05D001149 5.8e-06 54.3 105 38.1
BraA04t17733Z Brassica rapa HOM05D000108 ORTHO05D001149 5.8e-06 54.3 105 38.1
DCAR_020867 Daucus carota HOM05D000108 ORTHO05D001149 5.8e-06 54.3 57 45.6
SEGI_08820 Sequoiadendron giganteum HOM05D000108 ORTHO05D001149 5.8e-06 54.3 59 39.0
RhsimUnG0121300 Rhododendron simsii HOM05D000108 ORTHO05D001149 7.6e-06 53.9 58 44.8
Sp4g11450 Schrenkiella parvula HOM05D000108 ORTHO05D001149 7.6e-06 53.9 58 50.0
Peaxi162Scf00597g00827 Petunia axillaris HOM05D000108 ORTHO05D001149 9.9e-06 53.5 58 48.3


User provided reference genes

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