Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1582.4 832 100.0
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1565.4 832 99.0
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1564.7 832 99.2
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1457.6 833 91.5
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1454.9 832 91.1
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 0.0e+00 1366.3 856 85.6
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1365.9 843 87.1
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 0.0e+00 1346.3 852 84.9
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 0.0e+00 1320.8 852 82.4
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 0.0e+00 1319.3 852 82.0
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 0.0e+00 1308.9 848 81.8
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 0.0e+00 1285.0 850 80.9
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1281.9 848 84.2
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1278.5 844 84.6
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1275.0 845 84.6
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 0.0e+00 1226.8 904 72.8
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1221.1 849 81.2
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1176.0 845 79.8
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1118.6 722 84.2
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 0.0e+00 1096.6 850 68.1
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 1.5e-254 883.2 867 56.9
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 4.4e-254 881.7 869 57.1
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 1.7e-253 879.8 869 57.0
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 7.2e-249 864.4 872 56.7
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 1.7e-245 853.2 822 59.0
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 4.8e-245 851.7 826 58.8
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 1.1e-244 850.5 865 55.1
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.1e-244 850.5 871 55.0
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 5.9e-243 844.7 826 58.6
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 2.3e-242 842.8 894 54.3
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.8e-242 842.0 869 54.5
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.8e-242 842.0 869 54.5
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 1.1e-241 840.5 872 56.7
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 1.5e-241 840.1 825 57.0
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.1e-240 836.3 858 57.1
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 1.4e-239 833.6 866 55.2
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 1.4e-239 833.6 827 57.8
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.8e-239 833.2 827 57.9
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 2.3e-239 832.8 872 54.6
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 4.0e-239 832.0 854 55.0
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 5.7e-238 828.2 836 57.3
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 9.8e-238 827.4 972 50.5
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.7e-237 826.6 828 57.5
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 6.3e-237 824.7 881 54.8
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.4e-236 823.5 850 54.8
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 7.8e-235 817.8 839 56.9
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 1.3e-234 817.0 854 53.9
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 3.6e-232 808.9 773 58.6
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 5.2e-231 805.1 871 52.4
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.2e-230 803.9 913 52.8
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 1.2e-230 803.9 855 53.6
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 5.4e-228 795.0 880 51.9
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.2e-227 793.9 865 54.0
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 1.2e-227 793.9 862 53.0
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 6.0e-227 791.6 864 52.1
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.0e-226 789.3 878 53.0
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 8.6e-226 787.7 867 54.1
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 5.6e-225 785.0 871 52.2
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.3e-225 784.6 830 52.9
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 1.2e-224 783.9 870 53.6
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 1.6e-224 783.5 862 51.7
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 4.7e-224 781.9 839 52.9
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 1.1e-223 780.8 871 52.5
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.4e-223 780.4 859 52.2
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.5e-222 776.9 829 53.8
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 2.6e-222 776.2 824 53.9
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 4.4e-222 775.4 869 53.0
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.2e-221 773.1 825 53.7
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 2.4e-220 769.6 874 52.5
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 1.6e-219 766.9 857 53.0
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 3.5e-219 765.8 882 52.4
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 3.5e-219 765.8 826 52.7
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 6.0e-219 765.0 876 52.3
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 7.8e-219 764.6 850 51.3
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 3.3e-217 759.2 867 52.6
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 4.7e-216 755.4 834 52.9
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 8.1e-216 754.6 874 50.6
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.8e-215 753.4 855 51.3
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 2.3e-215 753.1 826 51.9
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 4.0e-215 752.3 882 50.7
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 8.9e-215 751.1 737 57.3
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 1.5e-214 750.4 757 56.4
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.6e-214 749.6 806 53.3
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 4.4e-214 748.8 864 50.7
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 5.8e-214 748.4 825 52.2
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 1.3e-213 747.3 877 50.3
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 2.4e-212 743.0 874 51.4
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 7.8e-211 738.0 918 48.6
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.7e-210 736.9 769 54.0
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 8.6e-210 734.6 883 51.5
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 1.9e-209 733.4 776 53.5
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 9.6e-209 731.1 827 51.0
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 1.2e-208 730.7 855 49.6
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 6.8e-207 724.9 867 50.1
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 8.9e-207 724.5 804 51.9
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.5e-206 723.8 863 49.7
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 4.4e-206 722.2 868 50.8
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 6.4e-205 718.4 693 58.2
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.1e-204 717.6 833 50.7
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.9e-204 716.8 791 53.4
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 8.7e-202 708.0 826 50.0
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.3e-200 704.1 850 49.6
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 4.8e-200 702.2 852 49.5
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.2e-195 687.6 680 55.9
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.0e-194 684.5 863 47.5
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.3e-194 684.1 833 48.4
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 1.3e-192 677.6 555 66.8
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 2.8e-192 676.4 855 48.3
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 3.8e-189 666.0 785 49.9
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.6e-184 650.6 720 51.5
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 6.9e-183 645.2 803 48.6
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 4.5e-182 642.5 797 46.0
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 4.9e-181 639.0 816 47.9
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 1.2e-179 634.4 835 45.1
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 1.3e-176 624.4 850 45.8
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 9.0e-175 618.2 608 55.9
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 1.6e-171 607.4 862 44.2
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.7e-160 570.9 552 57.1
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 6.9e-159 565.5 854 43.2
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 5.9e-158 562.4 917 40.5
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 7.7e-158 562.0 877 43.1
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 5.3e-151 539.3 452 65.0
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 3.8e-149 533.1 802 42.1
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 4.0e-146 523.1 826 41.6
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 5.9e-142 509.2 787 42.4
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.0e-141 508.4 874 39.9
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.2e-137 495.0 916 38.1
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 3.5e-134 483.4 737 42.9
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.9e-133 480.3 721 40.2
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.1e-124 451.8 860 37.1
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 3.3e-124 450.3 576 46.7
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 4.2e-124 449.9 492 51.8
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 6.0e-110 402.9 551 47.0
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 1.3e-104 385.2 815 34.7
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 5.6e-100 369.8 624 37.3
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 1.5e-97 361.7 553 41.2
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 1.8e-90 338.2 706 34.0
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 2.1e-83 314.7 440 45.2
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 4.3e-76 290.4 434 45.2
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 1.2e-73 282.3 435 45.1
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 1.2e-73 282.3 435 45.1
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 8.4e-72 276.2 364 48.1
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 3.4e-65 254.2 259 57.1
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 6.7e-61 240.0 312 47.4
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 2.6e-57 228.0 178 68.0
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 2.6e-57 228.0 178 68.0
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 7.6e-57 226.5 282 48.6
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.8e-45 188.7 195 56.9
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 6.3e-43 180.3 188 56.9
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.2e-41 176.0 248 44.8
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-35 156.0 178 53.9
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 1.7e-35 155.6 144 59.0
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 3.1e-34 151.4 175 50.9
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 1.0e-32 146.4 131 62.6
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 1.0e-32 146.4 138 55.1
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 3.2e-23 114.8 212 40.6
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 3.0e-21 108.2 358 27.9
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 2.9e-16 91.7 85 62.4
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 4.7e-14 84.3 60 70.0
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 1.8e-13 82.4 164 34.8
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 2.8e-11 75.1 159 33.3
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 2.8e-11 75.1 219 25.1
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 1.8e-10 72.4 36 94.4
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.8e-10 72.4 63 55.6
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 1.8e-10 72.4 58 58.6
BolC2t11814H Brassica oleracea HOM05D004054 ORTHO05D004945 2.4e-10 72.0 139 39.6
BolC3t17207H Brassica oleracea HOM05D004054 ORTHO05D004945 4.1e-10 71.2 41 78.0
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-08 65.1 47 63.8
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 2.1e-06 58.9 104 39.4
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 2.8e-06 58.5 86 43.0


User provided reference genes

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